RNA recognition by double-stranded RNA binding domains: a matter of shape and sequence (Q27023888)

Frédéric H. -T. Allain

series ordinal

3

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language of work or name

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June 2013

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Cellular and Molecular Life Sciences

published in

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volume

70

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issue

11

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page(s)

1875-95

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RNA-regulated interaction of transportin-1 and exportin-5 with the double-stranded RNA-binding domain regulates nucleocytoplasmic shuttling of ADAR1

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An extended dsRBD with a novel zinc-binding motif mediates nuclear retention of fission yeast Dicer

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The Inside-Out Mechanism of Dicers from Budding Yeasts

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The Solution Structure of the ADAR2 dsRBM-RNA Complex Reveals a Sequence-Specific Readout of the Minor Groove

21 March 2017

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Structure and RNA interactions of the plant MicroRNA processing-associated protein HYL1

21 March 2017

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Structure of Arabidopsis HYPONASTIC LEAVES1 and Its Molecular Implications for miRNA Processing

21 March 2017

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Solution structure of the Drosha double-stranded RNA-binding domain

21 March 2017

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Structural insights into mechanisms of the small RNA methyltransferase HEN1

21 March 2017

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Structural and biochemical insights into the dicing mechanism of mouse Dicer: A conserved lysine is critical for dsRNA cleavage

21 March 2017

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A stepwise model for double-stranded RNA processing by ribonuclease III

21 March 2017

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Crystal structure of a zinc-finger–RNA complex reveals two modes of molecular recognition

21 March 2017

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Solution structure of conserved AGNN tetraloops: insights into Rnt1p RNA processing

21 March 2017

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A novel family of RNA tetraloop structure forms the recognition site for Saccharomyces cerevisiae RNase III.

21 March 2017

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Molecular basis of sequence-specific recognition of pre-ribosomal RNA by nucleolin

21 March 2017

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RNA recognition by a Staufen double-stranded RNA-binding domain

21 March 2017

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Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA

21 March 2017

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Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin

21 March 2017

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NMR solution structure of a dsRNA binding domain from Drosophila staufen protein reveals homology to the N-terminal domain of ribosomal protein S5

21 March 2017

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Origins and Mechanisms of miRNAs and siRNAs

21 March 2017

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A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA

21 March 2017

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Role for a bidentate ribonuclease in the initiation step of RNA interference

21 March 2017

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Multiple sequence alignment with hierarchical clustering

21 March 2017

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Shape-specific recognition in the structure of the Vts1p SAM domain with RNA.

21 March 2017

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Minihelix-containing RNAs mediate exportin-5-dependent nuclear export of the double-stranded RNA-binding protein ILF3

21 March 2017

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Mechanism of interferon action: identification of a RNA binding domain within the N-terminal region of the human RNA-dependent P1/eIF-2 alpha protein kinase

21 March 2017

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Functions and regulation of RNA editing by ADAR deaminases

21 March 2017

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Multiple modes of RNA recognition by zinc finger proteins

21 March 2017

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Zinc finger proteins: getting a grip on RNA

21 March 2017

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Specificity of ribonucleoprotein interaction determined by RNA folding during complex formulation

21 March 2017

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RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency

21 March 2017

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cis-acting sequences responsible for anterior localization of bicoid mRNA in Drosophila embryos

21 March 2017

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Characterization of a human TAR RNA-binding protein that activates the HIV-1 LTR

21 March 2017

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Structure and specific RNA binding of ADAR2 double-stranded RNA binding motifs

21 March 2017

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The developmental transcriptome of Drosophila melanogaster

21 March 2017

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7 April 2017

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Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2

7 April 2017

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28 September 2017

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Regulation and Functions of ADAR in Drosophila

28 September 2017

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ADAR proteins: double-stranded RNA and Z-DNA binding domains

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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The double-stranded RNA-binding motif, a versatile macromolecular docking platform

28 September 2017

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28 September 2017

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The double-stranded-RNA-binding motif: interference and much more

28 September 2017

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Oligomerization activity of a double-stranded RNA-binding domain

28 September 2017

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A new alpha-helical extension promotes RNA binding by the dsRBD of Rnt1p RNAse III.

28 September 2017

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The brain-specific double-stranded RNA-binding protein Staufen2: nucleolar accumulation and isoform-specific exportin-5-dependent export

28 September 2017

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Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III.

28 September 2017

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Conservation of RNase III processing pathways and specificity in hemiascomycetes

28 September 2017

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Recognition of double-stranded RNA by proteins and small molecules

28 September 2017

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The dsRNA binding protein family: critical roles, diverse cellular functions

28 September 2017

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Nucleocytoplasmic distribution of human RNA-editing enzyme ADAR1 is modulated by double-stranded RNA-binding domains, a leucine-rich export signal, and a putative dimerization domain.

28 September 2017

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28 September 2017

RNA-protein interactions

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A physical interaction between Gar1p and Rnt1pi is required for the nuclear import of H/ACA small nucleolar RNA-associated proteins

28 September 2017

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The RNase III family: a conserved structure and expanding functions in eukaryotic dsRNA metabolism.

28 September 2017

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Dimerization of the 3'UTR of bicoid mRNA involves a two-step mechanism

28 September 2017

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Substrate recognition by a eukaryotic RNase III: the double-stranded RNA-binding domain of Rnt1p selectively binds RNA containing a 5'-AGNN-3' tetraloop

28 September 2017

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28 September 2017

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Distinct roles of two conserved Staufen domains in oskar mRNA localization and translation

28 September 2017

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Recognition of a conserved class of RNA tetraloops by Saccharomyces cerevisiae RNase III

28 September 2017

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Themes in RNA-protein recognition.

28 September 2017

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Function, mechanism and regulation of bacterial ribonucleases

28 September 2017

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Miranda mediates asymmetric protein and RNA localization in the developing nervous system

28 September 2017

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Regulation of ribonuclease III processing by double-helical sequence antideterminants

28 September 2017

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Specific mutations near the amino terminus of double-stranded RNA-dependent protein kinase (PKR) differentially affect its double-stranded RNA binding and dimerization properties

28 September 2017

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Minor-groove recognition of double-stranded RNA by the double-stranded RNA-binding domain from the RNA-activated protein kinase PKR.

28 September 2017

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Two functionally distinct RNA-binding motifs in the regulatory domain of the protein kinase DAI

28 September 2017

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Structure of the dsRNA binding domain of E. coli RNase III.

28 September 2017

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Exceptionally stable nucleic acid hairpins

28 September 2017

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The anatomy of A-, B-, and Z-DNA.

28 September 2017

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Structural studies of protein-nucleic acid interaction: the sources of sequence-specific binding

28 September 2017

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Sequence-specific recognition of double helical nucleic acids by proteins

28 September 2017

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Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein

28 September 2017

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Thermotoga maritima Ribonuclease III. Characterization of Thermostable Biochemical Behavior and Analysis of Conserved Base Pairs That Function as Reactivity Epitopes for the Thermotoga 23S rRNA Precursor

31 May 2018

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Intermediate states of ribonuclease III in complex with double-stranded RNA.

31 May 2018

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Tuning of RNA editing by ADAR is required in Drosophila

31 May 2018

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Noncatalytic assembly of ribonuclease III with double-stranded RNA.

31 May 2018

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A-to-I pre-mRNA editing in Drosophila is primarily involved in adult nervous system function and integrity

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

Structure of the double-stranded RNA-binding domain of the protein kinase PKR reveals the molecular basis of its dsRNA-mediated activation

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

Mutational analysis of the double-stranded RNA (dsRNA) binding domain of the dsRNA-activated protein kinase, PKR.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

Staufen protein associates with the 3'UTR of bicoid mRNA to form particles that move in a microtubule-dependent manner

31 May 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Sequence-specific recognition of RNA hairpins by the SAM domain of Vts1p

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Structural insight into the mechanism of double-stranded RNA processing by ribonuclease III.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Binding of double-stranded RNA to protein kinase PKR is required for dimerization and promotes critical autophosphorylation events in the activation loop.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

The carboxy-terminal, M3 motifs of PACT and TRBP have opposite effects on PKR activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Staufen-dependent localization of prospero mRNA contributes to neuroblast daughter-cell fate

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Role of ADARs in mouse development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Characterization of the reactivity determinants of a novel hairpin substrate of yeast RNase III.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Characterization of RNA sequence determinants and antideterminants of processing reactivity for a minimal substrate of Escherichia coli ribonuclease III.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-012-1119-X

Multiple RNA regulatory elements mediate distinct steps in localization of oskar mRNA.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3724394

Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities

28 November 2018

1 reference

12 December 2020

Comparative mutational analysis of the double-stranded RNA binding domains of Xenopus laevis RNA-binding protein A

1 reference

12 December 2020

Protein-RNA recognition

1 reference

12 December 2020

Nuclear retention of fission yeast dicer is a prerequisite for RNAi-mediated heterochromatin assembly

1 reference

12 December 2020

Structure of an AAGU tetraloop and its contribution to substrate selection by yeast RNase III

1 reference

12 December 2020

Two RNA-binding motifs in the double-stranded RNA-activated protein kinase, DAI

1 reference

12 December 2020

10.1007/S00018-012-1119-X

Identifiers

DOI

1 reference

Dimensions Publication ID

1033308354

0 references

1 reference

1 reference

PubMed publication ID

22918483

1 reference