AffinDB: a freely accessible database of affinities for protein-ligand complexes from the PDB (Q25257808)

6 July 2017

title

AffinDB: a freely accessible database of affinities for protein-ligand complexes from the PDB (English)

1 reference

6 July 2017

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4

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author name string

Peter Block

1

1 reference

6 July 2017

Christoph A Sotriffer

2

1 reference

6 July 2017

Ingo Dramburg

3

1 reference

6 July 2017

Gerhard Klebe

4

1 reference

6 July 2017

language of work or name

English

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publication date

1 January 2006

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6 July 2017

published in

Nucleic Acids Research

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6 July 2017

volume

34

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6 July 2017

issue

Database issue

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6 July 2017

page(s)

D522-6

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PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids

6 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

7 April 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

D-Phe-Pro-Arg type thrombin inhibitors: unexpected selectivity by modification of the P1 moiety

7 April 2017

1 reference

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Virtual screening for submicromolar leads of tRNA-guanine transglycosylase based on a new unexpected binding mode detected by crystal structure analysis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

(R)-3-Amidinophenylalanine-derived inhibitors of factor Xa with a novel active-site binding mode

7 April 2017

1 reference

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SCOP: a structural classification of proteins database for the investigation of sequences and structures

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

Molecular Recognition of Protein−Ligand Complexes: Applications to Drug Design

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

Prediction of binding constants of protein ligands: a fast method for the prioritization of hits obtained from de novo design or 3D database search programs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

The PDBbind database: methodologies and updates

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

The PDBbind database: collection of binding affinities for protein-ligand complexes with known three-dimensional structures

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

Relibase: design and development of a database for comprehensive analysis of protein-ligand interactions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

E-MSD: the European Bioinformatics Institute Macromolecular Structure Database

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

A new test set for validating predictions of protein-ligand interaction.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

Further development and validation of empirical scoring functions for structure-based binding affinity prediction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

Ligand-protein database: linking protein-ligand complex structures to binding data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

PDBsum: a Web-based database of summaries and analyses of all PDB structures

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

Protein Ligand Database (PLD): additional understanding of the nature and specificity of protein–ligand complexes

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

Utilising structural knowledge in drug design strategies: applications using Relibase.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

BindingDB: a web-accessible molecular recognition database

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1347402

Binding MOAD (Mother Of All Databases)

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16381925

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An old target revisited: two new privileged skeletons and an unexpected binding mode for HIV-protease inhibitors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16381925

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Development of KiBank, a database supporting structure-based drug design

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16381925

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKJ039

1 reference

6 July 2017

DBLP publication ID

journals/nar/BlockSDK06

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

6 July 2017

1 reference