The past, present and future of genome-wide re-annotation (Q24806422)

6 July 2017

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2 references

8 April 2021

The past, present and future of genome-wide re-annotation (English)

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6 July 2017

main subject

computational biology

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8 April 2021

2

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6 July 2017

1

Christos A Ouzounis

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language of work or name

English

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publication date

31 January 2002

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6 July 2017

8 April 2021

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6 July 2017

8 April 2021

3

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6 July 2017

issue

2

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6 July 2017

page(s)

COMMENT2001

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Genome sequences and great expectations

6 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Intrinsic errors in genome annotation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Recent developments and future directions in computational genomics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Predicting protein function by genomic context: quantitative evaluation and qualitative inferences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Annotating eukaryote genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Novel coding regions in four complete archaeal genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Some measures of comparative performance in the three CASPs.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Predicting enzyme function from sequence: a systematic appraisal

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Yeast chromosome III: new gene functions.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Novel protein families in archaean genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Methanococcus jannaschii genome: revisited.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Reconstruction of amino acid biosynthesis pathways from the complete genome sequence.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Characterization of new proteins found by analysis of short open reading frames from the full yeast genome

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

New protein functions in yeast chromosome VIII.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Functional and structural genomics using PEDANT.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Whole-genome sequence annotation: 'Going wrong with confidence'.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Prediction of enzyme classification from protein sequence without the use of sequence similarity.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

Challenging times for bioinformatics

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139008

HinCyc: a knowledge base of the complete genome and metabolic pathways of H. influenzae

28 November 2018

1 reference

12 December 2020

Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function

1 reference

12 December 2020

The challenges of genome sequence annotation or “The devil is in the details”

1 reference

12 December 2020

Errors in Genome Reviews

1 reference

12 December 2020

Errors in genome annotation

1 reference

12 December 2020

Automated genome sequence analysis and annotation

1 reference

12 December 2020

Reproducibility in genome sequence annotation: the Plasmodium falciparum chromosome 2 case

1 reference

12 December 2020

'Going wrong with confidence': misleading sequence analyses of CiaB and ClpX

1 reference

12 December 2020

Debates over credit for the annotation of genomes

1 reference

12 December 2020

Novelties from the complete genome of Mycoplasma genitalium

1 reference

12 December 2020

10.1186/GB-2002-3-2-COMMENT2001

Identifiers

DOI

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Dimensions Publication ID

6 July 2017

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6 July 2017

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