TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences (Q24796998)

Europe PubMed Central

title

TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences (English)

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1 reference

Frank Oliver Glöckner

5

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Thierry Lombardot

3

object named as

Thierry Lombardot

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Hanno Teeling

1

object named as

Hanno Teeling

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author name string

Jost Waldmann

2

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Margarete Bauer

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

4

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language of work or name

English

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publication date

26 October 2004

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published in

BMC Bioinformatics

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volume

5

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issue

1

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page(s)

163

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cites work

1 reference

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7 April 2017

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Bacterial rhodopsin: evidence for a new type of phototrophy in the sea

7 April 2017

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Application of tetranucleotide frequencies for the assignment of genomic fragments

7 April 2017

1 reference

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Proteorhodopsin genes are distributed among divergent marine bacterial taxa

28 September 2017

1 reference

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Novel Proteorhodopsin variants from the Mediterranean and Red Seas.

28 September 2017

1 reference

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Informatics for unveiling hidden genome signatures

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=529438

Evolutionary implications of microbial genome tetranucleotide frequency biases

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=529438

Capturing whole-genome characteristics in short sequences using a naïve Bayesian classifier

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=529438

Proteorhodopsin phototrophy in the ocean.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=529438

Genome-scale compositional comparisons in eukaryotes

28 September 2017

1 reference

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Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms

28 September 2017

1 reference

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Genomic signature: characterization and classification of species assessed by chaos game representation of sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=529438

Global dinucleotide signatures and analysis of genomic heterogeneity

28 September 2017

1 reference

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Nucleotide, dinucleotide and trinucleotide frequencies explain patterns observed in chaos game representations of DNA sequences

28 September 2017

1 reference

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Heterogeneity of genomes: measures and values

28 September 2017

1 reference

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Dinucleotide relative abundance extremes: a genomic signature

28 September 2017

1 reference

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An Efficient Statistic to Detect Over- and Under-represented Words in DNA Sequences

28 September 2017

1 reference

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Exceptional motifs in different Markov chain models for a statistical analysis of DNA sequences

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=529438

Comparative DNA analysis across diverse genomes.

30 May 2018

1 reference

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Genes from nine genomes are separated into their organisms in the dinucleotide composition space

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15507136

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-5-163

1 reference

journals/bmcbi/TeelingWLBG04

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1017298406

0 references

1 reference

1 reference

PubMed publication ID

15507136

1 reference