The ASRG database: identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing (Q24791274)

A subset of human 35S U5 proteins, including Prp19, function prior to catalytic step 1 of splicing

Europe PubMed Central

title

The ASRG database: identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing (English)

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Bing-Bing Wang

1

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Volker Brendel

series ordinal

2

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language of work or name

English

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publication date

2004

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published in

Genome Biology

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volume

5

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issue

12

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page(s)

R102

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cites work

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Serine-arginine (SR) protein-like factors that antagonize authentic SR proteins and regulate alternative splicing

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Combined biochemical and electron microscopic analyses reveal the architecture of the mammalian U2 snRNP

7 April 2017

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Partial purification of the yeast U2 snRNP reveals a novel yeast pre-mRNA splicing factor required for pre-spliceosome assembly

7 April 2017

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Conservation of functional features of U6atac and U12 snRNAs between vertebrates and higher plants

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The DEAD box RNA helicase family in Arabidopsis thaliana

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A cdc5+ homolog of a higher plant, Arabidopsis thaliana

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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The Prp19p-associated complex in spliceosome activation

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Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.

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Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins

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A comprehensive biochemical and genetic analysis of the yeast U1 snRNP reveals five novel proteins.

7 April 2017

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Yeast Pre-mRNA Splicing Requires a Pair of U1 snRNP-Associated Tetratricopeptide Repeat Proteins

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A yeast cap binding protein complex (yCBC) acts at an early step in pre-mRNA splicing.

7 April 2017

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Experimental RNomics: identification of 140 candidates for small non-messenger RNAs in the plant Arabidopsis thaliana

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Spliceosomal UsnRNP biogenesis, structure and function

7 April 2017

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Pre-mRNA splicing: the discovery of a new spliceosome doubles the challenge

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Pre-mRNA splicing: awash in a sea of proteins

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hnRNP complexes: composition, structure, and function

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Protein functions in pre-mRNA splicing

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The structure and function of proteins involved in mammalian pre-mRNA splicing

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7 April 2017

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U4 small nuclear RNA can function in both the major and minor spliceosomes

28 September 2017

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Splicing double: insights from the second spliceosome

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Alternative splicing and proteome diversity in plants: the tip of the iceberg has just emerged

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1 reference

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Pre-spliceosome formation in S.pombe requires a stable complex of SF1-U2AF(59)-U2AF(23)

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Purification and electron microscopic visualization of functional human spliceosomes

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UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants.

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Sequence-specific interaction of U1 snRNA with the SMN complex

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28 September 2017

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Pre-mRNA splicing in higher plants.

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28 September 2017

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28 September 2017

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The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome.

28 September 2017

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Multi-query sequence BLAST output examination with MuSeqBox

30 May 2018

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FCA, a gene controlling flowering time in Arabidopsis, encodes a protein containing RNA-binding domains.

30 May 2018

1 reference

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30 May 2018

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30 May 2018

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Regulation of alternative 3' splice site selection by constitutive splicing factors.

30 May 2018

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Characterization of the genes encoding U4 small nuclear RNAs in Arabidopsis thaliana

30 May 2018

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Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus

30 May 2018

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28 November 2018

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28 November 2018

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28 November 2018

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28 November 2018

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Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545797

Network of interactions of a novel plant-specific Arg/Ser-rich protein, atRSZ33, with atSC35-like splicing factors.

28 November 2018

1 reference

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Cloning and characterization of two subunits of Arabidopsis thaliana nuclear cap-binding complex

28 November 2018

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The origins of genomic duplications in Arabidopsis.

28 November 2018

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The Arabidopsis splicing factor SR1 is regulated by alternative splicing.

28 November 2018

1 reference

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An SC35-like protein and a novel serine/arginine-rich protein interact with Arabidopsis U1-70K protein

28 November 2018

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28 November 2018

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The plant U1 small nuclear ribonucleoprotein particle 70K protein interacts with two novel serine/arginine-rich proteins

28 November 2018

1 reference

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Isolation of S. cerevisiae snRNPs: comparison of U1 and U4/U6.U5 to their human counterparts

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15575968

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15575968

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular characterization of nucleus-localized RNA-binding proteins from higher plants

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15575968

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2004-5-12-R102

1 reference

Dimensions Publication ID

1029242941

0 references

1 reference

1 reference

PubMed publication ID

15575968

1 reference