Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes (Q24684571)

Emily Hodges

5

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Julius Brennecke

Julius Brennecke

4

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Alexander Stark

Alexander Stark

1

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Leopold Parts

Leopold Parts

3

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Gregory Hannon

6

Gregory J Hannon

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Pouya Kheradpour

2

Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs

Pouya Kheradpour

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language of work or name

English

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publication date

December 2007

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published in

Genome Research

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volume

17

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issue

12

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page(s)

1865-79

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cites work

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7 April 2017

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Evolution of genes and genomes on the Drosophila phylogeny

7 April 2017

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Sequencing and comparison of yeast species to identify genes and regulatory elements

7 April 2017

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7 April 2017

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

7 April 2017

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The functions of animal microRNAs

7 April 2017

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MicroRNAs: genomics, biogenesis, mechanism, and function

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7 April 2017

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Functional siRNAs and miRNAs Exhibit Strand Bias

7 April 2017

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Asymmetry in the assembly of the RNAi enzyme complex

7 April 2017

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An extensive class of small RNAs in Caenorhabditis elegans

7 April 2017

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An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

7 April 2017

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Identification of novel genes coding for small expressed RNAs

7 April 2017

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7 April 2017

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Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans

7 April 2017

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The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

7 April 2017

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bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila

7 April 2017

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MicroRNA-directed cleavage of HOXB8 mRNA

7 April 2017

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Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila

7 April 2017

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Tcl1 expression in chronic lymphocytic leukemia is regulated by miR-29 and miR-181

7 April 2017

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Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex

7 April 2017

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A microRNA mediates EGF receptor signaling and promotes photoreceptor differentiation in the Drosophila eye

7 April 2017

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Identification of hundreds of conserved and nonconserved human microRNAs

7 April 2017

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Phylogenetic shadowing and computational identification of human microRNA genes

7 April 2017

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The small RNA profile during Drosophila melanogaster development

7 April 2017

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Vertebrate microRNA genes

7 April 2017

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Secondary structure prediction for aligned RNA sequences

7 April 2017

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Rapid evolution of an X-linked microRNA cluster in primates

7 April 2017

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Specificity of microRNA target selection in translational repression

7 April 2017

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The widespread impact of mammalian MicroRNAs on mRNA repression and evolution

7 April 2017

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The evolution of gene regulation by transcription factors and microRNAs

7 April 2017

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Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans

7 April 2017

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microRNA target predictions in animals

7 April 2017

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Control of translation and mRNA degradation by miRNAs and siRNAs

7 April 2017

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Gene regulatory networks and the evolution of animal body plans

7 April 2017

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Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

7 April 2017

1 reference

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Ribo-gnome: the big world of small RNAs

7 April 2017

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A combined computational-experimental approach predicts human microRNA targets

7 April 2017

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A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans

7 April 2017

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Micro RNAs are complementary to 3' UTR sequence motifs that mediate negative post-transcriptional regulation

7 April 2017

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Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

7 April 2017

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Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes

28 September 2017

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RNA stem-loops: to be or not to be cleaved by RNAse III.

28 September 2017

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Unique folding of precursor microRNAs: quantitative evidence and implications for de novo identification

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099594

MicroRNA-9a ensures the precise specification of sensory organ precursors in Drosophila

28 September 2017

1 reference

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Rethinking the microprocessor

28 September 2017

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Approaches to microRNA discovery

28 September 2017

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MicroRNA functions in animal development and human disease

28 September 2017

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28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099594

Common logic of transcription factor and microRNA action

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099594

microRNAs: runts of the genome assert themselves

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099594

Characterization of the intergenic RNA profile at abdominal-A and Abdominal-B in the Drosophila bithorax complex

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099594

Translational repression determines a neuronal potential in Drosophila asymmetric cell division

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099594

The K box, a conserved 3' UTR sequence motif, negatively regulates accumulation of enhancer of split complex transcripts.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099594

Diversity of microRNAs in human and chimpanzee brain

30 May 2018

1 reference

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Biological function of unannotated transcription during the early development of Drosophila melanogaster

28 November 2018

1 reference

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Micro RNAs in animal development

28 November 2018

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Methods in comparative genomics: genome correspondence, gene identification and regulatory motif discovery

28 November 2018

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Complementary miRNA pairs suggest a regulatory role for miRNA:miRNA duplexes

28 November 2018

1 reference

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The Bearded box, a novel 3' UTR sequence motif, mediates negative post-transcriptional regulation of Bearded and Enhancer of split Complex gene expression.

28 November 2018

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28 November 2018

Identifiers

DOI

10.1101/GR.6593807

1 reference

1 reference

1 reference

PubMed publication ID

17989255

1 reference