Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution (Q22122079)

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Peng Guo

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Guo

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Paul Flicek

Paul

Flicek

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C Titus Brown

C Titus

Brown

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Tereza Manousaki

Tereza

Manousaki

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Magali Ruffier

Magali

Ruffier

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Carson Holt

Carson

Holt

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Kaben G Nanlohy

Kaben G

Nanlohy

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Malcolm Cook

Malcolm

Cook

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Jeramiah J Smith

Jeramiah J

Smith

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Katherine M Buckley

Katherine M

Buckley

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Yu-Wen Chung-Davidson

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object named as

Yu-Wen Chung-Davidson

Yu-Wen

Chung-Davidson

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Matthieu Muffato

Matthieu

Muffato

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Bronwen L Aken

Bronwen L

Aken

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Javier Herrero

Javier

Herrero

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Greg Elgar

Greg

Elgar

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Joseph D Buxbaum

Joseph D

Buxbaum

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Bernd Fritzsch

Bernd

Fritzsch

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Tatjana Sauka-Spengler

object named as

Tatjana Sauka-Spengler

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Tatjana

Sauka-Spengler

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Leanne M Wiedemann

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Leanne M

Wiedemann

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Shigehiro Kuraku

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Shigehiro

Kuraku

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Marianne E Bronner

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Marianne E

Bronner

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Ona E Bloom

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Ona E

Bloom

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Nicolas Rohner

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Nicolas

Rohner

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Baoli Zhu

Baoli

Zhu

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Clifford J Tabin

Clifford J

Tabin

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Wesley C Warren

Wesley C

Warren

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Chris T Amemiya

Chris T

Amemiya

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Richard K Wilson

Richard K

Wilson

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Miguel Pignatelli

Miguel

Pignatelli

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Mark D Yandell

Mark D

Yandell

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Sabyasachi Das

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Sabyasachi

Das

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Robb Krumlauf

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Robb

Krumlauf

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Lucinda L Fulton

Lucinda L

Fulton

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Stephen M J

Searle

Stephen M J Searle

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Sandra W

Clifton

Sandra W Clifton

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Jonathan P

Rast

Jonathan P Rast

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Ning Jiang

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Ning

Jiang

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Michael S Campbell

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Michael S

Campbell

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Jennifer R Morgan

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Jennifer R

Morgan

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Ravi Sachidanandam

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Ravi

Sachidanandam

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Carrie Sims

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Carrie

Sims

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Alexander S Garruss

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Alexander S

Garruss

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Stacia A Sower

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Stacia A

Sower

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Wayne A Decatur

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Wayne A

Decatur

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Jeffrey A Hall

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Jeffrey A

Hall

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Nil R Saha

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Nil R

Saha

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Masayuki Hirano

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Masayuki

Hirano

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Nathanael McCurley

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Nathanael

McCurley

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Paul Piccinelli

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Paul

Piccinelli

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Matthew Jones

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Matthew

Jones

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Scot V Libants

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Scot V

Libants

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Chu-Yin Yeh

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Chu-Yin

Yeh

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David W McCauley

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David W

McCauley

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James A Langeland

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James A

Langeland

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Zeev Pancer

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Zeev

Pancer

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Pieter J de Jong

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Pieter J

de Jong

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Brenda Theising

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Brenda

Theising

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Weiming Li

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Weiming

Li

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Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported

6 February 2023

language of work or name

English

0 references

publication date

April 2013

0 references

published in

Nature Genetics

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volume

45

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issue

4

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page(s)

415-21, 421e1-2

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copyright license

start time

24 February 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Insights into bilaterian evolution from three spiralian genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

19 March 2017

The genome of a songbird

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

The genome of the blood fluke Schistosoma mansoni

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

The Schistosoma japonicum genome reveals features of host-parasite interplay

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

TopHat: discovering splice junctions with RNA-Seq

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Genome analysis of the platypus reveals unique signatures of evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

The diploid genome sequence of an individual human

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

M-Coffee: combining multiple sequence alignment methods with T-Coffee

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Gene finding in novel genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Initial sequencing and comparative analysis of the mouse genome

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy Assessment

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Identification of common molecular subsequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Timing of genome duplications relative to the origin of the vertebrates: did cyclostomes diverge before or after?

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Phylogenetic conservation of a limb-specific, cis-acting regulator of Sonic hedgehog ( Shh)

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

The Universal Protein Resource (UniProt) in 2010

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Dissecting early regulatory relationships in the lamprey neural crest gene network.

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Gene order data from a model amphibian (Ambystoma): new perspectives on vertebrate genome structure and evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Repbase Update, a database of eukaryotic repetitive elements

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

VISTA: computational tools for comparative genomics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

A greedy algorithm for aligning DNA sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

NCBI Reference Sequences: current status, policy and new initiatives

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

CAFE: a computational tool for the study of gene family evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Automated de novo identification of repeat sequence families in sequenced genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Genetic consequences of programmed genome rearrangement

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Evolutionary crossroads in developmental biology: cyclostomes (lamprey and hagfish).

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Functional analysis of conserved non-coding regions around the short stature hox gene (shox) in whole zebrafish embryos

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Nrg1/ErbB signaling networks in Schwann cell development and myelination

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Evolution of adaptive immune recognition in jawless vertebrates

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Early evolution of conserved regulatory sequences associated with development in vertebrates

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Programmed loss of millions of base pairs from a vertebrate genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Dual nature of the adaptive immune system in lampreys

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

CONDOR: a database resource of developmentally associated conserved non-coding elements

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Ancient noncoding elements conserved in the human genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

AUGUSTUS: ab initio prediction of alternative transcripts

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

APOBEC4, a new member of the AID/APOBEC family of polynucleotide (deoxy)cytidine deaminases predicted by computational analysis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Whole-genome sequence assembly for mammalian genomes: Arachne 2.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Gene duplication and the uniqueness of vertebrate genomes circa 1970-1999.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

An improved approach for construction of bacterial artificial chromosome libraries.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

DIALIGN: multiple DNA and protein sequence alignment at BiBiServ

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Myelin tetraspan family proteins but no non-tetraspan family proteins are present in the ascidian (Ciona intestinalis) genome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Evolution of myelin sheaths: both lamprey and hagfish lack myelin

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Sonic hedgehog function in chondrichthyan fins and the evolution of appendage patterning.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Evidence that mechanisms of fin development evolved in the midline of early vertebrates.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

Elimination of a long-range cis-regulatory module causes complete loss of limb-specific Shh expression and truncation of the mouse limb

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3709584

29 November 2018

Identifiers

DOI

10.1038/NG.2568

1 reference

0 references

1 reference

1 reference

PubMed publication ID

23435085

1 reference