Structural and mechanistic conservation in DNA ligases (Q22065999)

PubMed publication ID

11058099

7 February 2023

S W Suh

series ordinal

2

author given names

S W

author last names

Suh

1 reference

PubMed publication ID

11058099

7 February 2023

language of work or name

English

0 references

publication date

1 November 2000

0 references

number of pages

8

1 reference

Mutational analysis of Escherichia coli DNA ligase identifies amino acids required for nick-ligation in vitro and for in vivo complementation of the growth of yeast cells deleted for CDC9 and LIG4

inferred from page(s)

published in

Nucleic Acids Research

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volume

28

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issue

21

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page(s)

4051-4058

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cites work

1 reference

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The crystal structure of the complex of replication protein A subunits RPA32 and RPA14 reveals a mechanism for single-stranded DNA binding

19 March 2017

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Structure of an XRCC1 BRCT domain: a new protein-protein interaction module

19 March 2017

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Chlorella virus DNA ligase: nick recognition and mutational analysis

19 March 2017

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Phylogeny of mRNA capping enzymes

19 March 2017

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Mammalian DNA double-strand break repair protein XRCC4 interacts with DNA ligase IV

19 March 2017

1 reference

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Activity of DNA ligase IV stimulated by complex formation with XRCC4 protein in mammalian cells

19 March 2017

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Crystal structure of the homo-tetrameric DNA binding domain of Escherichia coli single-stranded DNA-binding protein determined by multiwavelength x-ray diffraction on the selenomethionyl protein at 2.9-A resolution

19 March 2017

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Crystal structure of NAD+-dependent DNA ligase: modular architecture and functional implications

19 March 2017

1 reference

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Structure of the adenylation domain of an NAD+-dependent DNA ligase

19 March 2017

1 reference

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Crystal structure of the Oxytricha nova telomere end binding protein complexed with single strand DNA

19 March 2017

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MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily

19 March 2017

1 reference

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Crystal structure of an octameric RuvA-Holliday junction complex

19 March 2017

1 reference

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Structure of translation initiation factor 5A from Pyrobaculum aerophilum at 1.75 A resolution

19 March 2017

1 reference

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X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes

19 March 2017

1 reference

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The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold

19 March 2017

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Crystal structure of DNA recombination protein RuvA and a model for its binding to the Holliday junction

19 March 2017

1 reference

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Structural basis for the excision repair of alkylation-damaged DNA

19 March 2017

1 reference

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Crystal structure of an ATP-dependent DNA ligase from bacteriophage T7

19 March 2017

1 reference

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Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure

19 March 2017

1 reference

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XRCC1 protein interacts with one of two distinct forms of DNA ligase III

19 March 2017

1 reference

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RNA capping enzyme and DNA ligase: a superfamily of covalent nucleotidyl transferases

19 March 2017

1 reference

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Covalent catalysis in nucleotidyl transfer reactions: essential motifs in Saccharomyces cerevisiae RNA capping enzyme are conserved in Schizosaccharomyces pombe and viral capping enzymes and among polynucleotide ligases

19 March 2017

1 reference

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Molecular characterisation of a DNA ligase gene of the extremely thermophilic archaeon Desulfurolobus ambivalens shows close phylogenetic relationship to eukaryotic ligases

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

A superfamily of conserved domains in DNA damage-responsive cell cycle checkpoint proteins

19 March 2017

1 reference

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From BRCA1 to RAP1: a widespread BRCT module closely associated with DNA repair

7 April 2017

1 reference

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OB(oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences

7 April 2017

1 reference

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Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches

7 April 2017

1 reference

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DNA ligase III is recruited to DNA strand breaks by a zinc finger motif homologous to that of poly(ADP-ribose) polymerase. Identification of two functionally distinct DNA binding regions within DNA ligase III.

7 April 2017

1 reference

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Role of the DNA ligase III zinc finger in polynucleotide binding and ligation.

12 September 2017

1 reference

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The structure of the translational initiation factor IF1 from E.coli contains an oligomer-binding motif

12 September 2017

1 reference

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Structural classification of proteins: new superfamilies

12 September 2017

1 reference

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Expression and characterization of an RNA capping enzyme encoded by Chlorella virus PBCV-1

12 September 2017

1 reference

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Identification of essential residues in Thermus thermophilus DNA ligase

12 September 2017

1 reference

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The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA.

12 September 2017

1 reference

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Vaccinia virus DNA ligase: specificity, fidelity, and inhibition

12 September 2017

1 reference

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Isolation and sequence of the t-RNA ligase-encoding gene of Candida albicans

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

Active site of the mRNA-capping enzyme guanylyltransferase from Saccharomyces cerevisiae: similarity to the nucleotidyl attachment motif of DNA and RNA ligases

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

Protein motifs 5. Zinc fingers

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

Mutational analysis of mRNA capping enzyme identifies amino acids involved in GTP binding, enzyme-guanylate formation, and GMP transfer to RNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

DNA ligase: structure, mechanism, and function

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

The second zinc-finger domain of poly(ADP-ribose) polymerase determines specificity for single-stranded breaks in DNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

Location of the active site for enzyme-adenylate formation in DNA ligases

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

12 September 2017

Mammalian DNA ligases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

Conversion of a DNA ligase into an RNA capping enzyme

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

Mutational analysis of Chlorella virus DNA ligase: catalytic roles of domain I and motif VI.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

In vitro mutagenesis and functional expression in Escherichia coli of a cDNA encoding the catalytic domain of human DNA ligase I.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

DNA polymerase beta in abasic site repair: a structurally conserved helix-hairpin-helix motif in lesion detection by base excision repair enzymes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

Zinc fingers are sticking together

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

Footprinting of Chlorella virus DNA ligase bound at a nick in duplex DNA.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=113121

Solution Structure of Prokaryotic Ribosomal Protein S17 by High-Resolution NMR Spectroscopy†

29 November 2018

1 reference

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Common fold, common function, common origin?

29 November 2018

1 reference

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