A Debottlenecking Study of An Industrial
A Debottlenecking Study of An Industrial
A Debottlenecking Study of An Industrial
Published in:
Industrial & Engineering Chemistry Research
Publication date:
2019
Document Version
Peer reviewed version
Citation (APA):
Baehner, F. D., & Huusom, J. K. (2019). A Debottlenecking Study of an Industrial Pharmaceutical Batch Plant.
Industrial & Engineering Chemistry Research, 58(43), 20003-20013. https://doi.org/10.1021/acs.iecr.9b03134
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17 Due to operational complexity especially in multi-product scenarios, it is dicult to operate
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18 these plants at maximum throughput. Therefore, incremental debottlenecking is generally
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19 among the primary production objectives. If high xed costs arise from quality control and
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9 20 quality assurance in the context of good manufacturing practice (GMP) compliance,
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the
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11 21 importance of high capacity utilisation is increased even more. Furthermore, reductions in
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13 22 public healthcare spending by means of price caps or endorsed production of generic (non-
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15 23 branded) drugs is expected.
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This forces pharmaceutical enterprises to streamline existing
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17 24 production facilities and supply chains.
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The situation is complicated further for research-
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19 25 driven pharmaceutical enterprises due to the complex interrelations between capacity plan-
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21 26 ning, risk management (i.e. from failed new drug development processes), and operational
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23 27 issues.
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25 28 Incremental debottlenecking of continuous plants by installing additional recycles or by other
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27 29 means of deecting workload from the bottleneck to less pressed units is generally possible.
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29 30 Yet, exibility in such plants is limited compared to designs with parallelised, intensied
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31 31 units
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(scale-out vs. scale-up). Accordingly, systems of parallel standard units facilitate
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33 32 organic growth, enabling plants to track markets more exibly. This requires continual (ex-
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35 33 pensive) engineering expertise and therefore eective project execution. Not least, parallel
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37 34 standard units facilitate performance monitoring and predictive maintenance as trends from
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39 35 equipment wear & tear are more easily distinguishable from trends induced by uid proper-
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41 36 ties.
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43 37 Several frameworks exist for retrot debottlenecking of batch process systems, the most re-
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45 38 cent by Amaran et al., and a large base of works has been presented by and around Petrides
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47 39 et al.. All of these frameworks advocate the use of computational tools, which ts well
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49 40 the desire to more consciously apply process systems engineering methods in the bio-based
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51 41 and i.e. pharmaceutical industries.
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In an industrial context it is however not so that
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53 42 model-based work is apt for all projects. Particular challenges arise in bio-based produc-
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55 43 tion, and model-building as well as verication are likely to be expensive or even impossible
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44 due to unmeasured, uncertain, and unknown variables. This can stem from the complexity
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45 of solid-liquid suspension properties, large natural process variability, but also due to
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46 non-deterministic manual control and incomplete process monitoring systems. This work
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9 47 discusses these and other challenges, and proposes a solution approach. To this end, rstly
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11 48 the general notion of batch processing, economical considerations, and arising operational
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13 49 challenges are introduced in section 2. Regard is paid to the special case of bio-based pro-
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15 50 cesses. Identication and handling of bottlenecks are discussed in section 3. Important
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17 51 heuristics are extracted from batch process plant debottlenecking frameworks. An algorithm
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19 52 for the reconstruction of machine states based on time-series values of commonly measured
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21 53 variables is introduced in section 4. This is necessary to identify scheduling bottlenecks in
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23 54 process plants without conclusive monitoring schemes, as is also the case in the regarded
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25 55 production plant. This industrial case study is described in section 5, functionality of the
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27 56 algorithm shown, and debottlenecking candidate projects derived accordingly. Operational
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29 57 challenges and generalisations are discussed in section 6, hereafter the work is concluded.
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34 58 2 Background
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37 59 This section discusses batch processes at a high level of abstraction as well as disadvantages
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39 60 and challenges immanent in them. This is embedded in the context of bio-based processes
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41 61 before introducing retrot process re-designs aimed at debottlenecking.
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45 62 2.1 Economics of Batch Process Plants
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47 63 In a single-product scenario, continuous plants outperform batch processes. An estimate for
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49 64 possible savings is given for instance by Calabrese and Pissavini. Bauer and Craig state
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51 65 that there are less batch processes than continuous in chemical, petrochemical, and rening
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53 66 industries. This prevalence of continuous processes over batch production in large sectors of
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55 67 the chemical industry is a good indicator for their economic superiority, as batch operation
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68 constituted the rst paradigm. One explanation for this lies in lower equipment ecien-
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69 cies, which may be as low as 30% in pharmaceutical plants.
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70 Furthermore, reductions in equipment scale and consequently also temperature/concentration
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9 71 gradients due to better heat and mass transfer are expected for continuous reactors.
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Co-
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11 72 standy et al. oer an optimisation-based framework for the comparison of batch- and contin-
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13 73 uous reactors based on rst-principles. A more practical approach to evaluating the benets
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15 74 of continuous processing including downstream lines is presented by Teoh et al.. Continuous
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17 75 processes can also be preferable for safety reasons due to reductions of hazardous material
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19 76 hold-ups,
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and have been classied as more easily automatable.
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Finally, a batch sched-
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21 77 ule impedes process integration as the points in time of heating and cooling may change
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23 78 relative to one-another.
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This requires either advanced scheduling, which is expectedly con-
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25 79 nected with some cost, or extra equipment in the form of an intermediate thermal storage
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27 80 to decouple the integration events in time.
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31 81 2.1.1 Batch Production of Specialty Chemicals
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33 82 To reap the benets of economies of scale, suppliers of volume-limited markets need to
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35 83 operate exible multi-purpose plants.
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Due to changeover and shut-down as well as start-
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37 84 up costs, continuous multi-purpose plants can be unattractive. Furthermore, batch duration
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39 85 as an extra degree-of-freedom renders systems highly exible. Fifteen years ago, Edgar
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41 86 claim that, in total, there were more batch operated plants than continuous plants in the
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43 87 United States. More recently, Kano and Ogawa or Amaran et al. mention the growing
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45 88 importance of specialised products and consequently batch processes. An alternative lies
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47 89 in the development of exible multi-purpose continuous plants, which is however connected
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49 90 with substantial technological challenges.
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91 2.1.2 Bio-Based and Pharmaceutical Batch Production
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6 92 In bio-based production, but especially in the case of pharmaceuticals, the plantwide pro-
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8 93 duction regime is traditionally batch, likely for three reasons:
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11 94 Fermentation was initially a batch process (and frequently still is), this operational
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95 regime is propagated through the downstream line.
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15 96 Recurrent cleaning and sterilisation of units is necessary to prevent cross-contamination
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17 97 between batches and accumulation of biological cell matter in general.
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20 98 Limited batch durations reduce the risk of mutation in the deployed organisms.
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99 The latter also implies that, aside from the complications in heat-integrating processes, ma-
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100 terial recycles may be entirely forbidden due to cross-contamination risk policies calling for
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101 rigorous cleaning-in-place (CIP) or sterilisation-in-place (SIP) barriers.
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102 Due to the historical prevalence of batch processes, regulatory entities (U.S. Food and Drug
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103 Administration, European Medicines Agency, etc.) as well as industrial stakeholders have
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104 accumulated a lot of experience from frequent qualication of these processes. This is also
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105 mentioned by Wu et al., who acknowledge that batch processes are likely to have lower ef-
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106 ciencies, but bear the convenience of the "three-batch process validation approach". This
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107 adds a lot of inertia in a transition to continuous process regimes, as especially in rst-to-
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108 market scenarios commissioning delays are likely to outweigh suboptimally high operational
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109 costs - even if they persist for numerous years. Nevertheless, there is a push for the pharma-
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110 ceutical industry to rely more on continuous and semi-continuous processing technology.
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111 This is enabled by the fact that product batches which undergo nal testing and are ulti-
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112 mately sold need not strictly stand in relation to a single upstream batch.
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113 Beyond the process-oriented economic arguments, there are upstream processes that favour
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114 a continuous production regime due to biological properties. Schaber et al. compared costs
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115 for continuous and batch processing for a large-scale pharmaceutical production and con-
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116 clude signicant cost savings in the case of continuous processing technology. While most big
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117 players in pharmaceutical production engage in related research projects, the industry per-
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118 spective is not without restraint, especially concerning the replacement of existing (batch)
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119 infrastructure. Croughan et al. point out that production scales of pharmaceuticals are
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9 120 in general not comparable to bulk chemical- and petrochemical industries. Therefore, they
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11 121 conclude [...] should we close existing batch operations? The answer, at least for now is
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13 122 no, but the factory of the future embodied in new facility design is likely to evolve around
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15 123 integrated continuous bioprocessing". All in all, there is strong evidence that batch plants
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17 124 in today's chemical and especially biochemical industries are of economic relevance.
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21 125 2.2 Operational Objectives in High-Value Bio-Based Production
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24 126 In the above it has been mentioned that bio-based plants tend to operate in batch regimes.
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26 127 In these plants, operational complexity is substantial due to the additional scheduling tasks
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28 128 on unit operation layer. Low- and high-level automation may is complicated by the absence
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30 129 of reliable property models, presence of uncertainties and delays, and not lastly entirely
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32 130 unmeasurable states. Furthermore, the comparably small scale of the facilities and the
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34 131 indicated disproportion between cost of utilities and xed costs (i.e. quality control) may
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36 132 complicate the business cases for automation projects. Finally, due to fault-tolerant processes
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38 133 and equipment breakdowns, exible control systems are needed. This exibility is added
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40 134 in most easily by including educated operators into the control structure, which implies
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42 135 operating mistakes due to human error. All of the above may lead to suboptimal operation
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44 136 conditions including suboptimal capacity utilisation, which can easily go unnoticed in a
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46 137 complex environment. Therefore, if xed costs (for quality control, quality assurance, GMP
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48 138 facility depreciation, and labour) outweigh the cost of utilities, full capacity utilisation of
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50 139 installed equipment is likely to be the primary operational objective as long as the market
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52 140 is not saturated.
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141 2.2.1 Retrot Process Design
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6 142 Most enterprises have to react to market evolution in a recurrent manner. This may be due
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8 143 to changes in demand, product line-up, raw material supply, energy prices, and emerging
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10 144 or disappearing competitors. In the operated plants this implies an ongoing sequence of
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145 engineering projects, which aligns well with the plantwide control task, also iterative.
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14 146 Re-optimisations are especially important in newly-built plants after experience has been
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16 147 gathered, or after signicant process or market changes. In these projects, economic plant
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18 148 performance should be evaluated based on accumulated sales, process, and product data,
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20 149 but also extraordinary sampling campaigns may be sensible. This usually requires manual
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22 150 processing as, unlike in the case of control system performance monitoring, data sets
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24 151 are relatively heterogeneous and unstructured, and on top of that case-specic - making it
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26 152 dicult to apply a set of standard tools. It is important for an enterprise to enable ecient
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28 153 and robust execution of these projects; similarly process designs that allow incremental
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30 154 capacity increases may be a conscious choice.
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155 3 Debottlenecking Methodology
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156 Several frameworks and articles incorporating best practices specically for or including de-
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157 bottlenecking of batch process plants have been presented. Many of these include
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158 application examples, and further cases have been studied. Most of these frameworks
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159 advocate the use of models to augment decision-making. Undoubtedly, the dynamic be-
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160 haviour of complex batch process systems is hard to conceptualise for the human mind,
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161 calling for computational support. However, not every production facility or enterprise is
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162 apt for model-based optimisation. This is discussed for instance by Guimarães et al. for the
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163 case of discrete-event models. Here, with a reference to a basis for a maturity measure
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164 for an organisation's aptitude for process modelling is introduced. The latter depends both
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55 165 on the production process itself, which has to be structured and operate in stable routines,
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166 furthermore automatic data collection needs to be in place. Finally, the right skill-set needs
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167 to be available within the enterprise. These measures are subject to some ambiguity, not
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168 lastly stemming from a lack of documented industrial cases.
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170 3.1 Identication of Bottlenecks
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16 171 Any unit not capable of handling a throughput increase is per denition a bottleneck.
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18 172 In stable, continuous processes, personnel is usually able to pin-point this unit or these
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20 173 units with high precision. This information can also be concluded from statistical analysis
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22 174 of process data. Alternatively, the plant can be tried in a maximum throughput trial.
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24 175 However, the shortness of a trial bears the risk of missing eects that would become relevant
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26 176 in the long-term. Secondly, it is usually so that operators are more attentive during out-
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28 177 of-the-ordinary temporary scenarios. Capacity estimates can also be basted on for instance
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30 178 model-based extrapolation of the current state - this may be necessary if capacity is elevated
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32 179 past several bottlenecking stages at once. However, if uid properties change frequently and
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34 180 transient periods make up a substantial part of uptime, the task takes on a more complicated
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36 181 character. Here, a more advanced analysis including statistical elements is required.
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39 182 3.1.1 Identication of Bottlenecks in Batch Plants
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42 183 In a batch plant all of these complications can arise in the same way. Recalling section
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44 184 2.1.2, complex scenarios are actually more probable, as batch plants are more likely to pro-
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46 185 duce multiple products. Furthermore, operation may be less regular due to operators being
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48 186 actively in-the-loop. Also, one needs to rene the denition of a bottleneck in a batch pro-
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50 187 cessing context. According to Calandranis and Petrides, bottlenecks can be either size or
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52 188 time inicted.
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54 189 The size bottleneck limits the amount of coherent material ('a batch') passing through the
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56 190 system. It is evidently so that the size bottleneck's volume should be utilised to the maxi-
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191 mum in each batch. Note that there can be multiple size bottlenecks in processes where the
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192 product changes streams (for example elution processes) or processes with purge streams.
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193 Time bottlenecks are those with the largest stage cycle time, or those where it takes longest
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9 194 to process a batch until starting the next. Ideally, time bottlenecks operate at 100% equip-
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11 195 ment uptime, it is then also trivial to understand that throughput on these units cannot
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13 196 be increased further. However, due to operational complexity, it may not be possible to
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15 197 challenge a plant in a maximum throughput scenario, thus some form of extrapolation from
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17 198 nominal production rate may be of need.
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19 199 In general, batch plants ordinarily employ both 'native' batch and semi-batch units, but also
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21 200 semi-continuous units that only follow the batch regime of the incorporating plant. For a
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23 201 detailed overview of common nomenclature, the reader is referred to Barrera.
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27 202 3.1.2 Batch and Semi-Batch vs. Semi-Continuous Units
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29 203 Batch processes are characterised by their size or volume, have specied lling, processing,
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31 204 draining steps, and no material may be added to or removed during the processing phase. In
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33 205 fermentations this requirement is usually relaxed as addition of acids/bases for pH control
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35 206 purposes is allowed.
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There is always at least one transient variable and a constraint value
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37 207 for it. This variable can be cycle time, in which case the transient is reduced to a timer. A
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39 208 batch process is depicted schematically in gure 1 (left), where it can also be seen that for
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41 209 batch units with predominantly 'holding' operations (size bottlenecks), debottlenecking by
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43 210 means of volume maximisation is eective (for example fermentation).
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45 211 Native batch units are contrasted with continuous units operated under a batch operating
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47 212 regime. A 'semi-continuous' unit can be inactive due to planned downtime (as are all non-
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49 213 bottleneck units) or CIP / SIP / maintenance activities. However, start-up and shut-down
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51 214 procedures are generally negligible and the unit operates continuously during uptime. This
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53 215 is represented by gure 1 (right), and it is also intuitive to understand that scheduling
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55 216 bottlenecks are more likely to arise upon batch-size increases on 'ow' units (for example
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217 decantation).
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218 The restriction of no addition or removal of material is removed in semi-batch steps. A dead-
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219 end ltration process with uncertain cake properties is a semi-batch process with, depending
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9 220 on the control strategy (ow rate or pressure controlled regime) an unknown duration or
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11 221 even unknown ow rate and duration.
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These processes lie somewhat between batch and
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13 semi-continuous units in terms of how to identify and treat bottlenecks.
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Batch Operation Continuous Operation
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22 a a
Volume
Volume
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Time b Time b
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Figure 1: Native batch vs. semi-continuous units and the eect of throughput increases 'a'
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41 223 3.1.3 Engineering Projects
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44 224 Implementation of debottlenecking strategies even in a continuous improvement cycle is
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46 225 usually project-based. Calandranis and Petrides list three primary debottlenecking strategies
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48 226 (increase number of cycles per batch for the limiting procedure, rearrange the equipment
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50 227 assignment, introduce new equipment). Amaran et al. suggest the following taxonomy of
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52 228 possible retrot debottlenecking project turnouts which are applicable to a broader class of
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54 229 problems:
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230 "Type-1: operational improvements by removing slack and uncovering hidden capacity
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231 with current infrastructure".
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6 232 "Type-2: upgrades to current equipment, planning and scheduling improvements and
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8 233 improvements in operating discipline".
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11 234 "Type-3: fundamental improvements in operating policies".
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14 235 "Type-4: investment in new pieces of equipment/trains".
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17 236 The framework by Amaran et al. takes a process systems engineering approach and these
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19 237 projects are turnouts of model-based simulation studies with an optimisation sub-step. This
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21 238 allows balancing mathematical optimality and degree of subjectivity, and can therefore cap-
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23 239 italise exibly on skills and experience of the process optimisation team. Amaran et al.
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25 240 propose to validate the discrete-event model by means of comparing simulated inter-batch
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27 241 start times, overall production times, queue lengths, and individual processing and wait times
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242 to sets of historical data that are most descriptive of future operations. The cycle times of
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243 individual unit operation steps in turn are assumed to be captured by the process monitoring
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244 system. With a reference to the fact that validation can be a very time-consuming step, one
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245 could nd that comparably little attention is paid to it. Further, Amaran et al. remark that
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37 246 especially implementation of Type-3 projects may be dicult as also theses require opera-
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39 247 tional discipline. The above classication are adapted in the following and projects will be
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248 dened in these terms.
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45 249 4 Machine State Reconstruction Algorithm
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48 The absence of control system state information due to manual operation makes it dicult
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50 to impossible to reliably identify scheduling bottlenecks, furthermore it is not possible to
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52 validate models merely at hand of the collected time-series data. Sequential control systems
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54 are characterised by a set of discrete states S; examples are given in table 1. These states
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3 Table 1: Exemplary machine states in batch operation regime.
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6 Type of Common machine states
7 unit (aside from idle)
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Stabilise
9 Batch Reactor Heat
10 Fill Inoculate Ferment (chemical, Drain CIP
(Fermentation) Treatment
11 cooling)
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13 Holding Tank Fill Wait for Drain
CIP
14 (Storage ) (from) resource (to)
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Tank Fill Perform Wait for Drain
16 CIP
17 (Flocculation, ...) (from) operation resource (to)
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Flow Unit
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20 (Centrifugation, Active Reinitialise CIP
21 Filtration, ...)
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24 dene the control system outputs ω, and thereby nally the evolution of the set of continu-
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26 ous states X of the plant as a consequence of actuation. The continuous states furthermore
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28 experience signicant process noise, for instance from slurry properties as a consequence of
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30 batch-to-batch variability in fermentations. The control system outputs in this sequential
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32 context are often binary or categorical (for instance open/closed valve position), but also
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34 continuous process data (ow, temperature, pH) are measured. Some of the continuous vari-
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36 ables may be controlled, usually by means of proportional-integral control.
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38 This knowledge needs to be harnessed into the state reconstruction algorithm. Further infor-
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40 mation available comes in the form of standard operating procedures, piping and instrumen-
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42 tation diagrams, and not lastly experience of operators and engineers. A non-deterministic
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44 recurrent state machine RSM is chosen as a modelling basis:
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48 RSM = hM1 , ..., Mk i (1)
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50 Mi = (Si , s0i , ΣSF Ci , ΣT Si , Fi ) (2)
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54 250 For each component state machine Mi , S i describes the set of discrete states and s0i the
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56 251 initial state (which for all machines is idle). The input alphabet Σ will be delineated in
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252 greater detail in the following. Fi denotes the set of nal states for the component machines.
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253 In the reconstruction algorithm, the outputs ω of the sequential batch control system become
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254 inputs to the state machine reconstruction algorithm:
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11 ΣSF C = f (ω, S) (3)
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15 255 This is intuitive, as every time a valve (∈ ω) opens or closes, or a ow magnitude changes
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17 256 persistently, this must have been dictated by a state transition in S. Note that in this,
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19 257 operators are control system elements and therefore introduce non-determinism. They make
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21 258 mistakes and react delayed. In general there may be some leeway in the operating procedures
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259 that are not strictly product-safety critical. Further, operators may have to react exibly to
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260 changing uid properties: sometimes a routine will have to be called multiple times instead
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261 of once until the desired eect is achieved. Finally, units malfunction, which also leads to
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262 extraordinary state sequences.
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263 Thus, this input alphabet is not enough to reconstruct the machine states due to countless
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264 multiplicities: a valve opening / closing may result in dierent transitions depending on the
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265 current machine step - which may be unknown yet due to preceding multiplicities or irregular
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266 events. Therefore, characteristic points in the time-series data need to be translated into
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267 inputs
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41 ΣT S = f (X, S) , (4)
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268 which is described in more detail in section 4.2. Secondly, it may be necessary to call a sub-
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269 set of unique component state machines which will be supplied with the subsequent input
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270 sequence (both ΣSF C and ΣT S ) to see which - if any - of the machines converges to a nal
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271 state. Upon unequivocal convergence, the algorithm, recursive in its nature, will trigger a
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272 state transition at the point-in-time of initial execution of the subroutines. Otherwise it is
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273 concluded that an erroneous procedure must have occurred during processing of the active
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274 batch which is also logged.
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275 4.1 Identication of ΣSF C
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6 276 As indicated, opening and closing of valves as well as switching motors on or o are trivial
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8 277 and usable indicators. However, in some cases and especially in the case of ow control,
9
10 278 more scrutiny is of need. Changes in absolute values of rates (for example aeration) can
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12 279 allow pin-pointing specic steps. Secondly, in the case of strongly sequential operations (for
13
14 280 example a sequence of ve-fold elution or washing steps), a component state machine is
15
16 281 needed that keeps track of the sequence on the one hand, and potentially duration of the
17
18 282 steps on the other. These checks (range-, spread-, and timers) have proven to be powerful
19
20 283 elements for sequential owchart reconstruction.
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22
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24 284 4.2 Identication of ΣT S
25
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285 There are countless characteristic points in the time-series data and it is neither realistic nor
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286 necessary to delineate each one of them as they are highly case-specic. The most trivial
29
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287 characteristic points are a ow stopping persistently on a 'ow' unit, or a tank running dry
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288 for a 'holding' unit. The respective unit then must be in Idle/Empty. Note that for holding
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289 units, Empty is an unambiguous state, whereas Full may be more dicult to pin-point in
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290 the case of altering ll-levels. (Also for Empty, a tolerance may be of need due to sensor
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291 noise.) As the nalisation of a draining procedure on one tank normally means that a ll
39
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292 procedure on another tank has been nished, this information is of two-fold value.
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293 Beyond these simple indicators, more advanced routines can easily be included into the
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294 algorithm. Moving-horizon linear ts, smoothers, maximum norms, or variance estimators
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295 can be used eciently to detect and classify changes in uncertain environments. Averaged
47
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296 threshold values can usually be inferred from observations. These vector operations are
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297 however computationally expensive and should only be applied when scalar criteria fail.
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298 Finally, the duration of a procedure can be estimated early on and gives a good indication
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54 299 about its nature (standard operation, CIP routine, irregular event), enabling an a-priori
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56 300 selection of component state machines that will be triggered subsequently. It should be noted
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301 that, at times, knowledge of future information may be needed in order to unambiguously
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302 classify an event. In these, the algorithm cannot be used for on-line monitoring purposes.
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303 However, the real-time requirements in production are rather soft as there is signicant value
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9 304 in having knowledge about the past 12-24 hours of production after a shift changeover even
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11 305 if there is some delay.
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306 4.3 Superstructure, Equipment Assignments
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18 307 Due to the predominantly forward-oriented ow of product in batch plants without recycle, a
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20 308 separation into subroutines is possible, which allows step-wise implementation and validation.
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22 309 Therefore, generally a link between unit state machines only has to be drawn when material is
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24 310 transferred, which may require identication of a resource (ow unit) in the case of parallel
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26 311 units, and identication of a target holding unit. By tracking material accumulation /
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28 312 depletion and by estimating the ow rates into and out of the respective tanks, this link can
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30 313 then be established with high certainty.
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32
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34 314 4.4 Illustrative Example
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36 315 At hand of a small excerpt of the case study plant (introduced in the next section), these
37
38 316 principles will be demonstrated. The Gantt chart of the example plant in gure 2 is limited
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40 317 to a single fermenter F E03, from where material is transferred to holding tanks T 11 and
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42 318 T 12. At hand of the pseudo-code for algorithm 1 it is shown how machine states for the
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44 319 fermenters are identied from ΣSF C and ΣT S . Secondly, the posterior propagation of batch
45
46 320 numbers to the holding tanks is indicated algorithm 2. On plant scale this is necessary
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48 321 to create batch traceability, and for complex transitions. Furthermore, sometimes it is not
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50 322 possible to identify all necessary ΣT S & ΣSF C based on time-series values from one unit
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52 323 operation, and steps on preceding / succeeding units need to be included. In these cases, the
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54 324 batch ID needs to be propagated simultaneously with the RSM calculations. (For instance,
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56 325 this is dierent for the special case of the recycle section (Tanks 31/32, Unit 3, Tanks 41/42
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Algorithm 1 RSM Principle
7 1: T is vector of time-points
8 2: ω is matrix of inputs (valves initially closed), X is matrix of continuous states
9 3: SF E03 is unknown fermenter machine state
10 4: procedure trackFermStates(X, ω, T )
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5: SF E03 = idle; tk = T (1)
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13 6: while tk < T (end) do
14 7: if SF E03 is idle then
15 8: CheckTransitionsFromIdle(... X.F E03.Level, ω.F E03.V alveIn (tk ) , T, tk )
16
17
9: else if SF E03 is f illing then
18 10: CheckTransitionsFromFilling(...)
1
2
3 Algorithm 2 Posterior Propagation of Batch ID
4
5 1: TS,F E03 contains points in time of all fermenter state transitions from algorithm 1 as well
6 as batch IDs
7 2: TS,T 11 and TS,T 12 contain holding tank state transitions
8 3: procedure propagateBatchID(TS,F E03 ,TS,T 11 ,... TS,T 12 )
9
4: # Times of all tank lling events:
10
11 5: TF ill,T 11 = TS,T 11 .allBatches.periodOf(lling)
12 6: TF ill,T 12 = TS,T 12 .allBatches.periodOf(lling)
13 7: for each batchID in TS,F E03 do
14 8: tdrain = batchID.periodOf(draining)
15
16
9: if tdrain = any(TF ill,T 11 ) then
17 10: Propagate batchID to batch in TS,T 11
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7 2 3 45 2 3 45 2 3 4 5
8 1 0 1 0 1 0
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Figure 2: Gantt chart excerpt with propagation of the batch ID (color). Grey lines indicate
25
26 level in the tanks. (Fermenter states: 0:idle, 1:lling substrate, 2:autoclaving & waiting for
27 inoculation, 3:fermentation, 4:waiting for transfer, 5:emptying )
28
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30 336 5 Pharmaceutical Production Plant Case Study
31
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33 337 At hand of an industrial production of fermentation-derived antibiotic, the challenges men-
34
35 338 tioned above are delineated. Furthermore, it is shown that in the case of a strongly capacity-
36
37 339 leveraged process, local improvements can be identied eectively using visual statistics and
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39 340 domain knowledge. The study is to be of descriptive value, outlining the challenges that
40
41 341 are likely to exist in many semi-automatic production facilities currently in operation, while
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43 342 proposing some ways of how to handle them.
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45
46
47 343 5.1 Process System Description
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344 Figure 3 shows the process in terms of semi-continuous and batch units as well as those
50
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345 entailing strong elements of both. A more detailed description was not compliant with the
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346 intellectual property policy of the industrial partner, but this does not harm the analysis
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347 in the following. The CIP barrier running through a certain fraction of the downstream
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348 section is also indicated. In the regarded plant, the batch number is logged exclusively for
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349 fermentation units. For all other machines, only time-series data (i.e. ows, pressures, levels,
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7
pH) are available on the historian.
8
9
10 CIP
…
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12 Recycle
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14 Fermentation
Tank Tank Unit Tank Tank
15 11 21 21 31 41
16 Fermentation Unit 1 Unit 3 …
17 Tank Tank Unit Tank Tank
12 22 22 32 42
18 Fermentation
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20
21
22
CIP
23 …
24 Tank
25 Tank
61
… Unit 4 Unit 4 End of analysis (no data)
26 5
27 Tank
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30 Figure 3: Indication of process owsheet in terms of batch (predominantly holding: 'tank')
31 and ow 'units'. Units 21 and 22 (light orange underlay) with strong aspects of both. Note
32 the structured CIP that passes through a certain fraction of the downstream line sequentially.
33
34 350
35
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37 351 5.1.1 Application of State Reconstruction Algorithm
38
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352 The proposed recursive state machine based algorithm is applied, which allows reconstruc-
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353 tion of the machine states for an entire production campaign of almost 70 batches with high
42
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354 certainty. This enables taking advantage of the advanced plotting capabilities available in
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355 open-source software (here Python). Figure 4 shows a Gantt chart of the production cam-
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356 paign with the units from the process owsheet (gure 3) on the y-axis over date-time on
48
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357 the x-axis. The colour code allows facile visual tracking of a batch through the system, fur-
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358 thermore the scaled time-series variable that best characterises the respective process steps
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359 on the machines is displayed. The boxes on U1 have been omitted to show the discontinuous
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360 nature of this ow unit which may make reliable state identication dicult. As the infor-
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361 mation about unit-activity is implicitly dened both by the level evolution of upstream and
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362 downstream tanks, this induces no loss in informative value. Furthermore, a second indicator
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363 (the level in the wastewater treatment plant) has been added as a dotted line to units T21
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9 364 and T22. High material inventory in the water treatment plant can delay a step transition
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11 365 on T21 and T22. However, as the water treatment plant as a resource is shared by several
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13 366 plants, there is substantial noise and no unambiguous classication of delays was possible.
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15 367 Visual analysis of some operational patterns with engineers and operators was found to be
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17 insightful, but is not to be discussed in greater detail in this work.
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U1 T12 T11 FE03 FE02 FE01
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42 Datetime
43
44 Figure 4: Reconstructed Gantt chart of an entire production campaign with unique colour-
45 code for batches and scaled time-series data (usually ows or volumes) as indicator of process
46 step. Cleaning-in-Place with black underlay for units T31/T32/U3. Last batch of campaign
47 has been excluded.
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49 368
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369 5.2 Bottleneck Identication
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6 370 By mere visual assessment of gure 4, the density of the colour-bars on units T21/T22 and
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8 371 U21/U22 indicates a bottleneck. Especially downstream of these units, long idle periods
9
10 372 indicate free capacities. Upstream, the fermenters may exhibit long cycle times. However,
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12 373 this front-end process is easily plannable and long cycle times occur as material is prepared in
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14 374 advance to be ready for downstream processing. In the end this is possible due to overcapacity
15
16 375 also on the fermenters.
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19
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376 5.2.1 Bottleneck Identication (Frequentist Statistics)
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22 377 There are multiple ways to assess capacity at current planning and operating skill. Firstly,
23
24 378 it is possible to draw an average over the entire campaign (76.5 days) in which 69 batches
25
26 379 have passed through the largest part of the downstream line which gives a capacity of 0.9
27
28 380 batches per day.
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30 381 Bar-plots showing the eective (normalised w.r.t. number of units) cycle times are a common
31
32 382 visual tool for comparing equipment capacities. Figure 5 indicates a strongly leveraged
33
34 383 process with a bottleneck around T21/T22 and U21/U22. Note that here waiting time
35
36 384 between batches is not counted, and exclusively processing or waiting with material-in-the-
37
38 385 loop is tracked. An equivalent visualisation is shown in gure 6, however expressed in batches
39
40 386 per day which was preferred by the industry stakeholders due to its more expressive nature.
41
42 387 The average stage cycle time (including the time units wait for material from upstream)
43
44 388 amounts to 53.3 hours. Converting to the eective average stage cycle time, a capacity
45
46 389 estimate based on the bottleneck can be made and adds up to
47
48
49
50 C = (24h/d)/(53.3h/2b) = 0.9b/d , (5)
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53 390 b denoting batches. This is a good indication that the Frequentist analysis is meaningful.
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55 391 A reduction of waiting for upstream material on the bottlenecking units would increase this
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25 Figure 5:
Unit Operations
Eective cycle times (normalised by number of installed machines), excluding
26
periods of waiting for material-transfer from upstream.
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53 Unit Operations
Figure 6: Eective capacity expressed in batches per day.
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392 to 1 batch per day. However, this requires substantial operating discipline and is thus both a
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393 dicult and risky project. Again, it is not possible to dierentiate waiting periods further as
6
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394 there are many process steps with naturally varying durations due to changing slurry/uid
8
9 395 properties, and the re-constructed machine steps do not contain enough information to un-
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11 396 ambiguously characterise the waiting periods. It is known that CIP-procedures throw the
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13 397 downstream-line o of the planned fermentation schedule on a regular basis. Careful exami-
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15 398 nation of the Gantt chart reveals that CIPs of units T31/T32 as well as U3 prohibit passing
16
17 399 material on from U21/U22. This delays the already long processing step and furthermore
18
19 400 propagates upstream to units T21/T22, which have previously also been identied to have
20
21 401 naturally long cycle times. Figure 7 shows the results of an algorithm that classies cycles on
22
23 402 units U21/U22 into CIP-aected and non-CIP-aected (and post-CIP) populations. Despite
24
25 403 of large variability, CIP-aected cycles can be clearly distinguished and are substantially
26
27 delayed, the cycle immediately after a CIP is already unaected by this.
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6 CIP-affected
33
Indirect CIP affected
Frequency
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36 4 non-CIP-affected
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39 2
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42 0
43 0 5 10 15 20 25 30 35 40 45 50 55 60 65 70
44
45 Hours
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48 Figure 7: Eect of Cleaning-in-Place on cycle durations. Indirectly aected denotes the cycle
49 after the CIP-aected cycle has been completed.
50
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405 5.2.2 Bottlenecks in a Transient Scenario
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6 406 Due to the inability to dierentiate inter-unit waiting and include this into the bar plot
7
8 407 (gures 5 and 6), the scenario needs to be assessed in the transient regime. The time-
9
10 408 evolutions of the machine capacities are overlaid in gure 8. (Here fermentation has been
11
12 409 omitted as it is known that ample capacity is available.) Units T21/T22 and U21/U22 exhibit
13
14 410 the lowest capacities over the entire campaign. It is known that they are strongly correlated,
15
16 411 furthermore it appears that both can be rate-limiting at dierent times. Therefore, in the
17
18 412 following a selection of possible debottlenecking projects is identied from process knowledge
19
20 substantiated with the statistical analysis.
21
22
12 2xT1
23 U1
24 10 2xT2
25 2xU2
2xT3
Batches / day
26 8
27 2xT4
28 6 T5
29 2xT6
30 4
31
2
32
33
34 2018-08-14 2018-08-28 2018-09-11 2018-09-25 2018-10-09 2018-10-23
35
Date-time
36 Figure 8: Eective capacities over time for all units but fermentation. Proximity in the
37
process and similar capacities indicate a shared bottleneck on units T21/T22 and U21/U22;
38
all other cycle times lie far below these two throughout the campaign.
39
40 413
41
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43
44 414 5.3 Retrot Engineering Projects
45
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415 It is not a possibility to increase batch size further (avert 'size bottlenecks'). Fermenter
47
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416 volume has been enhanced previously by increasing the height of the tanks, but another
49
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417 increase at this point is not realistic. However, a project aimed at substantially increasing the
51
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418 product concentration in the slurry by adjusting feed composition as well as feeding strategy
53
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419 is ongoing. This constitutes debottlenecking on the biochemical level, which suggests an
55
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420 extension of the classication size/scheduling bottleneck by a quality bottleneck, as it not
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421 evident that all downstream unit operations can handle this increase (thinking for instance
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422 about resin capacity in chromatographic units ).
6
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423 Having identied the scheduling bottleneck consisting of an interlinkage of units T21/T22
8
9 424 and U21/U22, it is time to capitalise on the process knowledge of the experienced engineers
10
11 425 for the identication of possible engineering projects.
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13 426 Firstly, it is desirable to reduce the eect of downstream CIPs. These not only delay the
14
15 427 bottleneck, but also induce substantial operational complexity due to the irregularity arising
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17 428 in the schedule. Currently, CIPs of U3 block both tanks T31/T32 (gure 9) and therefore also
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19 the transmission of material from bottleneck U21/U22 for ca. 12 hours. A reconguration of
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48 Figure 9: Strongly delayed material transfer from bottleneck (U21, olive-green batch) due
49 to T31/T32 blockage by U3 CIP.
50
429
51
52 430 the CIP piping allows running a CIP on unit U3 with only one of the tanks (there will still
53
54 431 be two shorter tank CIPs). This implies that the other tank is free to receive the upstream
55
56 432 material-in-waiting, freeing up roughly 12 hours of bottleneck operation once every 6-8 days
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433 as dictated by the CIP schedule. This is expected to yield a capacity increase of 0.5 batches
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434 per week for a comparably simple Type-2 project (3.1.3). Again, it must be pointed out that
6
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435 this reduction in delay is likely to reduce the propagation of delays into the upstream process,
8
9 436 reducing operational complexity for operators due to increased regularity, facilitating future
10
11 437 optimisation projects.
12
13 438 Secondly, aside from these irregular delays, it is desirable to elevate the baseline capacity on
14
15 439 the bottlenecking units. Figure 10 shows some rened machine step statistics (anonymized).
16
17 440 Steps 4-6 denote the transfer of material from T21/T22 to U21/U22 and therefore take up
18
19 441 an equally long amount of processing time on both units. The distinction is drawn as step 4
20
21 442 is largely automatic, whereas step 5 requires substantial manual operation. Delays here arise
22
23 443 especially due to challenging uid properties as a result of variability in the fermentations.
24
25 444 In the case of highly viscous slurries, the transfer of material requires a lot of manual re-
26
27 445 tuning of set points. This can lead to delays if the operator is not disposable and can create
28
29 446 problems in other parts of the process as the operator needs to keep an eye on the procedure.
30
31 447 Installation of a new pumping system with a higher degree of automation as a Type-4 project
32
33 448 is likely to shorten this step signicantly. Furthermore, variability of the step duration will
34
35 449 be reduced and the operator be given more capacities to engage in other parts of the process.
36
37 450 Roughly, each 5 hours of shortening the procedure will increase capacity by 0.7 batches per
38
39 451 week. It is not clear exactly how much time will be saved, but as indicated by gure 11 there
40
41 452 is high potential due to extreme delays. (The large tails in steps 2-4 in gure 10 are i.e. due
42
43 453 to CIPs.)
44
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48 454 6 Discussion
49
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51 455 Firstly, the case study has conrmed that it is not always possible or justiable to apply a for-
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53 456 mal model-based systems engineering approach to optimisation of industrial processes. Lim-
54
55 457 itations in model-building and verication, as well as uncertainty regarding implementability
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25 Figure 11: Distribution of cumulative transfer times (steps 4-6).
26
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28 458 especially of projects that require operational discipline are main inhibitors in this. On the
29
30 459 other hand it is shown that modern data processing environments can be a viable tool in
31
32 460 the incremental optimisation of bio-based processes, especially if the increments have only
33
34 461 moderate impact on operations. Statistical means create a more explicit evidence-base than
35
36 462 mental models. Furthermore, it has been shown that it is possible to reconstruct necessary
37
38 463 cycle time information even in plants without a rigorous monitoring system, as is the case in
39
40 464 many semi-automated facilities due to the diculties that arise in monitoring manual pro-
41
42 465 cess steps. The proposed algorithm is closely linked to process and plant structures, which
43
44 466 renders it intuitive and easy to maintain. Furthermore, it allows identifying batches that did
45
46 467 not follow a standard pattern with high certainty.
47
48 468 In the regarded scenario, the recursive state machine functioned eectively despite of the
49
50 469 uncertain process regime as many input sequences themselves were very reproducible (due
51
52 470 to being automated or standardised operating procedures). Augmented by the time-series
53
54 471 data from common sensors and domain knowledge, this enabled precise reconstruction of the
55
56 472 schedule - it was however connected with a substantial programming eort. Accelerating this
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473 development process should greatly contribute to usability of the proposed methodology. The
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474 same applies to an extension of the method which better accommodates or even automat-
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475 ically handles irregular sequences or time-series proles. Bayesian changepoint detection
8
9 476 seems to oer a theoretic foundation which can help with both ambitions. Here, thought
10
11 477 should be given to balancing programming eort with the workload which may arise in pos-
12
13 478 terior validation of the algorithm, which expectedly grows with its exibility/independence.
14
15 479 Utilising a exible algorithm for detailed analyses within the superstates (which can be re-
16
17 480 liably generated by a robust embedding algorithm such as the one presented in this work)
18
19 481 might constitute a good trade-o.
20
21 482 In terms of process optimisation, Amaran et al.'s model-based approach is justied by set-
22
23 483 ting an ambitious future production target. Due to the implied complexity, for instance
24
25 484 de-bottlenecking of multiple stages at once calls for a notable level of formality. Still, small
26
27 485 projects along the way must not be neglected, especially if they pave the way for these large
28
29 486 projects by facilitating or enabling modelling, validation and implementation.
30
31 487 In these small projects, a model-based approach may not always be the correct choice. Again,
32
33 488 besides unknowns on the physiochemical level, modelling may be dicult in the bio-based
34
35 489 industries as
36
37
38 490 Machine steps are not tracked in semi-automated facilities (incomplete process moni-
39
40 491 toring)
41
42
43 492 Production processes are unsteady/irregular which makes validation of the models
44
45 493 complicated and costly or even impossible
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47
48 494 Model-uncertainties and complex manual operations can create substantial uncertainty
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50 495 about the goodness of the results after implementation
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496 On the other hand, the amount of products and number of parallel trains are usually quite
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497 manageable.
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498 It could be argued that Amaran et al. presuppose that this type of statistical analysis is a
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499 standard operation, but especially in smaller-scale and semi-automated facilities this is likely
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500 not so. Furthermore, in industry especially Type-1 and Type-2 problems will often not jus-
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501 tify the dedicated development and validation of models, as it may be both too expensive
8
9 502 and too time-consuming, calling for simpler approaches. The situation may be dierent if a
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11 503 digital twin of the plant is available and rigorously maintained. On the other hand, this is
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13 504 still an emerging technology and the economics behind it are in need of further illumination.
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15 505 In general, the value of creating a database as an enabler of rigorous process systems engi-
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17 506 neering should be acknowledge by industrial stakeholders. This calls for investments in new
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19 507 data acquisition and better data contextualisation, but also in integrated manufacturing ex-
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21 508 ecution & control systems, which facilitate the often cumbersome data-collection process.
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23 509 In the above analysis, no performance indicators beyond current practices
8,23,41
are intro-
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25 510 duced. However, a statistical analysis should have its place in a framework directed at
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27 511 especially bio-based batch plant debottlenecking. Modern data processing environments
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29 512 such as Python or R are attractive (cheap, fast, advanced, exible) as they enable highly ef-
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31 513 cient analyses as well as visualisations. Thus, the case study should hopefully be of notable
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33 514 practical interest to industrial readers.
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36
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38 515 7 Conclusion
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40
41 516 Batch processing is a relevant production paradigm especially in the bio-based industries,
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43 517 and a number of generalisable operational challenges have been shown at hand of an indus-
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45 518 trial case study. While several methodologies for debottlenecking of batch process plants
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47 519 exist in literature, it is likely that applicability in large parts of the bio-based industries is
48
49 520 limited. The reasons for that lie in the irregularities that arise as a cause of manual process
50
51 521 control, but also from missing monitoring systems (both of biochemical properties as well
52
53 522 as machine states). An algorithm has been introduced that is capable of reconstructing
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55 523 the machine states necessary to identify and avert scheduling bottlenecks. Based on visual
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524 statistical and heuristics, a powerful combination that maybe deserves a mentioning in a
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525 exible framework, promising candidate debottlenecking projects have been identied in the
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526 case study plant. The chosen projects are robust and have a positive eect on reproducibility
8
9 527 (process stability), and thus bring the plant closer to a state that allows rigorous model-based
10
11 528 optimisation. Transforming industrial process plants into predictable entities should be a
12
13 529 general ambition both for academic and industrial stakeholders in order to reap the benets
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15 530 of modern systems engineering tools. While it is a shared endeavour, it seems likely that the
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17 531 academy has to play an orchestrating role in this.
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22 532 Acknowledgements
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25 533 The project received nancial support from Innovation Fund Denmark.
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