MRES216 Physical Techniques For The Study of Biological Systems
MRES216 Physical Techniques For The Study of Biological Systems
MRES216 Physical Techniques For The Study of Biological Systems
In this module we shall concentrate on crystalline materials, as the lack of order in amorphous materials makes them more difficult to study. A crystal comprises a space lattice and a basis
Solids can be divided into two categories crystalline or amorphous. A crystal has long range order
. . .
. . .
space lattice
Note that the space lattice is not an arrangement of atoms, but a lattice of points which form the framework onto which the atoms are hung. In order to describe a crystal structure completely, we must specify the underlying lattice and the basis of atoms associated with every point in the lattice the number of atoms in the basis and their positions. For simple elemental solids, such as Argon, the basis is a single atom and so the description of the basis is trivial. Other elements have a two-atom or four-atom basis, whereas compounds must have a basis of at least one molecule of the substance; complex organic compounds can have thousands of atoms in the basis.
MRES216
Crystal Structure 1
MRES216
Crystal Structure
2 1
S D Barrett
October 2007
A a b C a b R = 2a + 3b E
B a
b D a b F
locates an exactly equivalent point, i.e. a point with the same environment as P. This is translational symmetry. The vectors a, b, c are known as lattice vectors.
a a b The u n i t c e l l is defined as the parallelepiped (or parallelogram, in 2-d) whose edges are formed by these lattice vectors a , b , c. For each space lattice we can select primitive lattice vectors and an associated primitive cell containing just one lattice point (it doesnt matter where the lattice point is in the unit cell it is conventionally placed at the corner). Note that a set of primitive vectors is not necessarily unique. b The unit cells labelled A, C, E and F are primitive as they only contain one lattice point. The cells labelled B and D contain two lattice points and so are non-primitive. Cell F is a special case in which the cell has been formed by drawing the perpendicular bisectors (lines in 2-d, planes in 3d) of lines joining a chosen lattice point to all of its neighbours. The smallest polygon (polyhedron in 3-d) thus formed is called the WignerSeitz primitive cell.
MRES216 Crystal Structure 4 1 S D Barrett October 2007
MRES216
Crystal Structure 1 3
Lattice Symmetry
Translation transforms a lattice into itself, i.e. a lattice that has been translated by a combination of primitive vectors is indistinguishable from the original. In addition to translation, there are other symmetry operations which can do this Reflection in a plane Rotation about an axis Inversion through a point Glide ( = reflection + translation ) Screw ( = rotation + translation ) The latter two, requiring a combination of actions, are known as compound operations. Inversion can also be considered as a compound operation as it is equivalent to a rotation of followed by reflection in a plane perpendicular to the axis of rotation. (A lattice has inversion symmetry if the environment of a point at r is identical to that of a point at r.) A lattice possesses nfold rotational symmetry if rotation of the lattice through an angle of 2/n transforms it into itself. What values of n are valid ? Some simple maths shows that n can take values of 1, 2, 3, 4 or 6. Note that a lattice cannot have 5fold rotational symmetry, but there are interesting materials, called quasicrystals, that can. (Ask Dr McGrath if you want to know more about quasicrystals.)
MRES216 Crystal Structure 1 5 S D Barrett October 2007
MRES216
Crystal Structure
6 1
S D Barrett
October 2007
Square
Hexagonal
The general oblique lattice has 1- and 2-fold rotational symmetry, and no mirror reflection symmetry. By restricting the primitive vectors to be perpendicular, we create the rectangular lattice which has, in addition to the symmetries of the oblique lattice, mirror reflection symmetries.
MRES216 Crystal Structure 1 7 S D Barrett October 2007
It is sufficient at this point to present the names and definitions of the lattices in terms of the relationships between the unit cell vectors a, b and c (these are for reference only you will not need to remember them all).
S D Barrett
October 2007
For instance, the conventional (non-primitive) cells of the face centred and body centred cubic lattices are
Tetragonal
a=bc abc
= = = /2 = = = /2
Orthorhombic
Triclinic Monoclinic
abc abc
= = /2 = = /2
FCC
BCC
a=b=c
Hexagonal
* Simple
a=bc
= = /2 = 2/3
Note that in all of these diagrams of crystal structure, the atoms are drawn as widely separated small spheres for clarity (often refered to as a ball and stick model). In reality, the separation between atoms is such that the atomic spheres touch, i.e. the atoms fill as much space as the crystal structure allows.
MRES216
Crystal Structure
1 10
S D Barrett
October 2007
Sodium Chloride The Bravais lattice is FCC and the basis comprises one Na atom and one Cl atom separated by half the body diagonal of the unit cell cube.
+ Na Face Centred Cubic The FCC structure is adopted by a large number (~ 20) of metals, including the heavier end of the transition metals (Ni, Rh, Pd, Ir, Pt), the noble metals (Cu, Ag, Au), and some of the rare gases (Ne, Ar, Kr, Xe). Cl-
In addition, many compounds and alloys are based on the cubic structure. Two examples of general interest are NaCl and CsCl, and these compounds have given their names to these generic types of structure.
MRES216
Crystal Structure
1 12
S D Barrett
October 2007
Cesium Chloride The structure of CsCl is similar to that of NaCl in that it has a basis of two different species of atom, separated by half of the body diagonal of the unit cell cube. The lattice, by comparison, is a simple cubic and so the resultant structure is more easily visualised.
Hexagonal Close-Packed The HCP structure is based on the simple hexagonal lattice and has a two-atom basis. The second atom of the basis is positioned half way up the cell and so forms another hexagonal layer of close-packed atoms half-way between the top and bottom layers of the unit cell.
+ Cs Cl-
There is no way of choosing a primitive unit cell such that the basis contains only one atom. The primitive cell usually drawn for the HCP crystal structure is shown in bold. It is conventional to refer to the lattice constant (interatomic separation) in the plane of hexagons as a and that in the perpendicular, or axial, direction as c (where the latter is the height of the unit cell, and not the separation of adjacent layers of hexagonal planes).
Examples of the CsCl structure include alloys such as CuPd, CuZn (b-brass), AgMg, BeCu.
MRES216
Crystal Structure 1 13
MRES216
Crystal Structure
1 14
S D Barrett
October 2007
Diamond The diamond structure has an FCC space lattice and a basis comprising two identical atoms as with the HCP structure there is no way of choosing a primitive unit cell such that the basis contains only one atom. Alternatively, the structure may be viewed as two interpenetrating FCC lattices, one displaced relative to the other along a body diagonal by a quarter of its length. The atoms on each of the two FCC sublattices have been drawn in red and green (or dark and light grey) to clarify the diagram, but in fact are identical.
b 2 a (i) Find the intercepts of the plane with the 3 crystal directions or axes in terms of primitive vectors a , b , c (ii) Take the reciprocals (iii) Multiply the resulting 3 numbers by the smallest number that makes the result equal to 3 integers h, k, l The plane is then defined by the notation ( h k l ). Thus, in the above example : intercepts reciprocals x 12 = 2,4,3 = 1/2 , 1/4 , 1/3 = 6,3,4 4
Relatively few elements exist in the diamond structure. Carbon is the most obvious example, but the importance of this structure in solid state physics is mainly due to the fact that this is the natural state of the semiconductors silicon and germanium. Many two-element compounds form in a diamond-like structure in which the first element occupies one FCC sublattice and the second element the other. This structure is named after its prime example, ZnS.
MRES216 Crystal Structure 1 15 S D Barrett October 2007
(100)
(010)
In a crystal with true cubic symmetry the choice of which of the three axes to label the x-axis, and which the y and the z, is entirely arbitrary. Thus the (100) plane is physically equivalent to the mathematically distinct (010) and (001) planes. This leads to the grouping of various numbers of planes into sets, or families _ _ _ (001) (010) (100) (100) (010) (100) 3x2=6 (110) (011) .... 3 x 2 x 2 = 12 (111) .... .... 2x2x2=8 (210) .... .... 6 x 2 x 2 = 24 (321) .... .... 6 x 2 x 2 x 2 = 48 The sets of planes are denoted { h k l }.
(110)
(111)
(112) z y x
For directions in a crystal, take components (or projections) on axes a , b and c . For example, the direction whose components are 2a, 3b, 2c is denoted [ 2 3 2 ]. Directions also occur in sets, and are denoted < h k l >. For a cubic lattice, the direction [ h k l ] is perpendicular to the plane ( h k l ). In non-cubic systems, this is not necessarily true, so beware! The Miller indices for hexagonal crystals are a special case (not considered here).
(112)
MRES216
Crystal Structure 1 17
MRES216
Crystal Structure
1 18
S D Barrett
October 2007
Crystal planes and directions defined by Miller indices direction = [ h k l ] plane = ( h k l ) set of directions = < h k l > set of planes = { h k l }
MRES216
Crystal Structure 1 19