Typhoid Research
Typhoid Research
Typhoid Research
Etiology
Like other members of the Enterobacteriaceae family, Salmonellae are gram-
negative, acid-fast, facultative anaerobic bacillae. Salmonella comprises 2
main species, Salmonella enterica and Salmonella bongori (prev S
enterica subspecies V). S enterica, in turn, comprises 6 subspecies, of
which S enterica subsp enterica has the most serovars (or serotypes) and is
the most important to human infection.[1] This includes S Typhi
and S Paratyphi, with the complete scientific
names Salmonella enterica subspecies enterica Typhi
and Salmonella enterica subspecies enterica Paratyphi, respectively. Unlike
many other Salmonella species, S Typhi and S Paratyphi are exclusively
human pathogens.[CDC. Yellow Book. 2024] Other species within
the genus Salmonella are collectively known as nontyphoidal salmonella
(NTS), many of which are pathogenic to humans or other animals. NTS
infections are mainly limited to gastroenteritis in humans, although invasive
nontyphoidal serovars (iNTS) exist.
S Typhi and S Paratyphi serovars have been classified by phage typing since
the early 1900s within an established, continuously evolving taxonomic
structure as new variants arise.[2] With the advent of genetic techniques,
enteric fever classification is increasingly based on genotypes for research,
surveillance, and clinical purposes. Genotyping improves the ability
to identify and track outbreaks and antimicrobial resistance and monitor for
emerging antimicrobial resistance mechanisms. When combined with
emerging clinical antimicrobial susceptibility patterns, this provides
additional guidance for empiric therapy. Single nucleotide variants are used
to assign S Typhi genomes into the GenoTyphi scheme, comparable to
existing phenotypic taxonomic structures.[3]
See StatPearls' companion article "Salmonella" for more information on the
spectrum of Salmonella bacteria and illness.
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Epidemiology
Transmission
Transmission is primarily through the fecal-oral route, via consumption of
food or water contaminated with the feces of a convalescent or chronic
asymptomatic carrier. The importance of chronic carriage to ongoing
transmission is well documented in non-endemic countries; however, the role
in endemic countries is not well understood. Sexual transmission has rarely
been documented among men who have sex with men.[CDC. Yellow
Book. 2024] S Typhi and S Paratyphi can exist in the environment for a
prolonged period in a nonculturable, nonreplicative state. This creates a
persistent environmental reservoir that can lead to infection and outbreaks,
such as via contaminated crops.[2]
Risk Factors
Different factors determine the risk of enteric fever in endemic versus non-
endemic countries. In non-endemic countries, the acquisition of enteric fever
is related to travel, contact with a traveler from an endemic country, or
exposure to food prepared by a chronic carrier. In contrast, risk factors in
endemic countries include individual host factors, environmental exposures,
and climate and geographic factors.
Individual host factors
On average, the incidence of enteric fever peaks between the ages of 5 and 9.
However, this masks great variability in the age of onset in different
locations, with a younger peak age incidence correlating to a higher
prevalence of enteric fever. In very high prevalence areas, peak incidence
may occur in infants due to increased exposures and the greater accumulated
immunity acquired with repeat clinical, subclinical, or asymptomatic
infections as people age. Reinfections demonstrate that only a moderate level
of protection is conferred by clinical infection.[2]
Typhoid fever is more severe in debilitated and immunocompromised
patients such as those with human immunodeficiency virus, on glucocorticoid
therapy, or with altered phagocyte function (eg, patients with malaria and
sickle cell anemia). Salmonellae are most commonly acid-sensitive bacteria
and are destroyed in the stomach by gastric acid unless a large dose is
ingested.[4] Achlorhydria and intake of antacids and antihistamines increase
susceptibility to infection with smaller doses.
Normal flora of the gut is protective against the infection. The use of broad-
spectrum antibiotics that destroy the normal flora allows increased invasion.
Malnutrition decreases normal gut flora and also increases the susceptibility
to infection.[5] Human genetics likely plays a role in susceptibility to
typhoid, with a marker mapping to the HLA class II region strongly
associated with enteric fever resistance.[2]
Environmental exposures
A meta-analysis demonstrated that having an improved water source with a
protected well can reduce the risk of culture-confirmed typhoid infection by
half.[6] Having surface water as a water source doubles the risk of typhoid
fever compared to other unimproved water sources, such as an unprotected
well or spring. Using any household water treatment reduces the risk
compared to no treatment. Using metal lids and keeping water containers
covered is associated with an 80% lower odds of typhoid infection than
keeping water in open containers, while using dirty containers doubles the
risk.
People using unimproved pit latrines had 50 times the risk of enteric fever
than those having limited, basic, or safely managed sanitation facilities.
Those defecating in the open had 1.2 times the risk. A lack of a handwashing
facility with soap and water at home increases the odds by 2.3 compared to
those without such facilities.[6] Independent of vaccination, living in a house
with better WASH facilities significantly decreases the risk of enteric fever.
Climatic and geographic factors
A distinct seasonal pattern of enteric fever incidence exists globally, with
variability accentuated further from the equator. Similarly, a higher incidence
of enteric fever occurs with increased temperatures. Between 11° and 35° N,
previous rainfall events are positively associated with the incidence of enteric
fever. Climate change will likely increase the incidence of enteric fever and
other gastrointestinal illnesses via increased flooding, drought, and
temperatures, compromising food and water safety.[2]
Burden of Disease
Enteric fever is a prime example of the "infectious divide" between high-
income countries (gross national income per capita in 2021 of >$12,695) and
those with low and middle incomes (≤$1046 and >$1047-$12,695,
respectively).[7] In high-income countries, where improvements to sanitation
started in the early 1900s, enteric fever is now seen primarily in travelers
returning from endemic areas. Incidence remains high in many low- and
middle-income countries with poor WASH.
Due to diagnostic challenges, underdeveloped surveillance systems, and the
lack of access to universal health care in many areas, the true incidence
of S Typhi and S Paratyphi in much of the world can only be estimated. The
2019 Global Burden of Disease Study models rates using existing
epidemiological data and case counts from population-based studies.[8] The
vast majority of enteric fever cases worldwide are due to S Typhi. In 2019, an
estimated 9.2 million (95% CI 5.9-14.1) typhoid fever cases and 110,000
(95% confidence interval; 53,000-191,000) deaths occurred worldwide. This
compares to 11 to 21 million cases and 148,000 to 161,000 deaths in 2015.
[8] While S Typhi comprises the majority of enteric fever cases worldwide,
the percentage of cases due to S Paratyphi varies widely across
regions. S Paratyphi accounts for about 25% of all enteric fever cases in
South Asia.[2] Approximately 3.8 million S Paratyphi infections occurred
globally in 2019.[8]
High-Income Countries
As an example of a high-income country, about 400 cases of typhoid fever
and 50 to 100 cases of paratyphoid fever were reported each year in the
United States from 2016 to 2018. Of these, 85% and 92% are attributed to
international travel, with the remainder due to local transmission.
[CDC. Yellow Book. 2024] Fewer cases were reported in 2020, likely
reflecting decreased travel due to the coronavirus pandemic.[CDC. Typhoid
and Paratyphoid Surveillance. 2020] The median age was 26 and 24 years for
typhoid and paratyphoid cases, respectively. No deaths were reported,
although about 82% of cases for which data is available were hospitalized.
In 76% of cases, international travel was reported where a travel history was
available. More than 75% of those with a single destination identified travel
to India or Pakistan. The most common reason for international travel was to
visit friends and relatives (VFR), with 48% of S Typhi infections and 64%
of S Paratyphi infections reporting VFR. Just under 6% of people
with S Typhi reported receiving the typhoid fever vaccine in the previous 5
years.[CDC. Typhoid and Paratyphoid Surveillance. 2020] Longer travel
duration is associated with a higher incidence of infection, although infection
can occur even during short visits of less than 1 week to highly endemic
areas.[CDC. Yellow Book. 2024]
Low- and Middle-Income Countries
The 2019 Global Burden of Disease Report identifies 44 countries with a
high estimated typhoid burden (≥100 cases/100,000 persons/year).[8] The
highest estimated incidences of enteric fever occur in Southeast Asia, Eastern
Mediterranean (187 cases/100,000 persons/year), and African World Health
Organization superregions (respectively 306, 187, and 111 cases/100,000
persons/year).[8] Together, typhoid and paratyphoid were the 18th leading
causes of disability-adjusted life-years (DALYs) globally for children aged 0
to 9 years and 14th for those aged 10 to 24 years in 2019. While typhoid and
paratyphoid fever represent a greater proportion of all DALYs in 2019 than
in 1990, the age-standardized rates for DALYs declined 51% and 16%,
respectively, since 1990.[8] In South and Southeast Asia, S Typhi is the
leading cause of nonhospital acquired bloodstream infections.[2]
Outbreaks are an additional signal of disease burden. The US Centers for
Disease Control (CDC) Global Disease Detection Operation Center reported
7 confirmed outbreaks globally between 2017 and 2022, with 14,056
becoming ill in the Philipines in 2022; 1312, 3187, 7134 people affected in 3
separate outbreaks in Zimbabwe in 2017 and 2018; 14,894 sickened with
XDR Typhi in Pakistan in 2018 and 2019; and 23 infections occurring in 1
building in China in 2022.[7]
Antimicrobial Resistance
In low- to middle-income countries, antimicrobial resistance patterns often
follow the pattern of antibiotic use and the acquisition and spread of
mutations. In high-income countries where travel is the primary risk factor
for the acquisition of enteric fever, the prevalence and the pattern of drug
resistance among isolates reflect the destination countries for travel. In the
United States in 2020, 99% of isolates had a decreased susceptibility to
fluoroquinolones. None were multiple drug resistant (MDR), and none were
resistant to ceftriaxone, although extremely drug resistant (XDR) cases have
previously been reported.[CDC. Typhoid and Paratyphoid
Surveillance. 2020] Up-to-date information on typhoid and paratyphoid
resistance patterns in the United States can be found on the CDC's National
Antimicrobial Resistance Monitoring System website.
Multidrug Resistance
Worldwide, an estimated 2.5 million MDR S Typhi infections and 7.4 million
fluoroquinolone non-susceptibility (FQNS) S Typhi infections occurred in
2019.[9] MDR strains are common in sub-Saharan Africa, increasing from an
estimated 6% of all typhoid strains in 1990 to 72.7% in 2019.[9] The rate of
MDR typhoid is declining in South and Southeast Asia, comprising 55.4% of
all typhoid infections in South Asia in 1990 and 26.4% in 2019.[9] Rates of
MDR are also more variable in Asia than in Africa, ranging from an
estimated 3% in India and Nepal to 68% in Pakistan and 76% in Cambodia.
[3] The Southeast Asian, East Asian, and Oceania superregion has a lower
overall prevalence of MDR typhoid compared to South Asia, declining from
an estimated 19.0% to 4.7% between 1990 and 2019.[9] Northern Africa and
the Middle East have shown a stable rate in MDR, with little change from the
19.4% estimated in 1990.[9] MDR Typhi is virtually absent in Micronesia
and Latin America.[3] Globally, the prevalence of MDR in S Paratyphi
strains was an estimated 9.2% in 1990, while in 2019, it was 0.2%. FQNS
was present in 0.6% of S Paratyphi in 1990 and 95.0% in 2019.[9]
Fluoroquinolone Non-Susceptibility
Nonsusceptibility to fluoroquinolones is widespread among S Typhi strains.
Globally, 1.1% of strains were estimated to be FQNS in 1995.[9] Rates have
increased since then, although they vary highly across countries and regions.
The estimated prevalence of FQNS strains in South Asia overall was 95.2%
in 2019, while in the superregion comprising Southeast Asia, East Asia, and
Oceania, it was 36.4%. In 2019, Pakistan had an estimated rate of 99.1%
FQNS, while in Indonesia, it was 10.4%.[9]
The increase in FQNS started later in Africa than in Asia, and the prevalence
continues to be lower. In 2019, rates of FQNS in Africa were variable across
regions and countries, often reflecting travel interconnections with Southeast
Asia.[10] In sub-Saharan Africa, 24 of 38 countries had a prevalence of
FQNS greater than 15%. In North Africa and the Middle East, the overall rate
of FQNS was estimated to be 35.0%.[9] FQNS is emerging in some areas of
Latin America, such as Chile.[3]
Extensive Drug Resistance
In Pakistan, about 70% of all isolates were XDR in 2020, with resistance to
chloramphenicol, ampicillin, co-trimoxazole, ciprofloxacin, and 3rd
generation cephalosporins.[3] While large epidemiological studies have not
determined XDR strains to be widespread in other countries, this must be
interpreted cautiously, as modeling studies derive estimates based on a
fraction of total cases.[3]
In 2019, 16 countries were known to have imported cases of XDR typhoid.
[10] Diagnosis of XDR S Typhi cases in people without a history of travel to
Pakistan indicates a wider spread than can be detected by surveillance
systems. For example, in the UK, XDR S Typhi infection in a traveler to
India indicates XDR has been introduced at least once. Nine XDR typhoid
cases without travel outside the United States were identified between
November 2019 and October 2020; the S Typhi genotype matched those
circulating in Pakistan.[11] In 2022, 23 cases were linked to an apartment
building in Beijing.[10]
Countries that have a high incidence of typhoid and extensive travel with
Pakistan have an extremely high risk of XDR transmission. For example,
Afghanistan has one of the highest estimated typhoid fever burdens globally
and was the destination for 3.37 million trips in 2021.[10] While Saudi
Arabia and the United Arab Emirates have reported no or 1 case of XDR
typhoid, this likely reflects low detection and reporting of cases. A high rate
of travel exists between these highly populated Gulf States and Pakistan, yet
reports far fewer cases than in countries with fewer travel connections (eg,
the United States, Ireland, and the United Kingdom).[10] Note that
cephalosporin resistance also occurs in strains without other antimicrobial
resistance. Levels of cephalosporin resistance were low in all endemic
countries except for Pakistan.[3]
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Pathophysiology
The pathophysiologies of S Typhi and S Paratyphi infections have not been
fully elucidated, mainly due to the complexity of pathogenic mechanisms and
the restriction of infection to humans. S Typhimurium infection in a mouse
model and controlled human challenge studies (CHIM) have significantly
contributed to the current understanding of enteric fever pathogenesis. In the
CHIM studies, S Paratyphi requires a 10 times lower dose of bacteria
than S Typhi (1000 cf 10,000 cfu) to induce clinical infection in 60% and
67% of volunteers, respectively.[2] The median onset of symptoms is 8 days.
Bacteremia is longer in S Paratyphi than in S Typhi, and asymptomatic
infection was more common.
S Typhi and S Paratyphi have diverse mechanisms to address the critical tasks
in their pathogenesis and survival: evasion of stomach acidity, invasion of the
intestinal epithelium, dissemination and intracellular survival, excretion and
transmission, and the development of antimicrobial resistance. Virulence
genes are carried in Salmonella pathogenicity islands, chromosomal elements
acquired through horizontal transmission from other pathogenic bacteria. To
date, 15 Salmonella pathogenicity islands have been identified, carrying
genes affecting pathogen survival, virulence, adhesion, evasion of host
defenses, cellular death, proinflammatory mediators, bacterial multiplication,
and others.[4]
The Vi antigen is well known as an exopolysaccharide capsule possessed
by S Typhi, along with several other Salmonella and non-Salmonella spp.
The target of modern conjugate vaccines, Vi is considered important
to S Typhi pathogenesis; however, the precise role remains unclear, notably
as S Paratyphi lacks a Vi capsule and yet produces a clinically
indistinguishable illness. S Typhi and S Paratyphi do not share any other
unique virulence factors. Moreover, Vi antigen-negative S Typhi bacteria
have also been identified.[4]
Ingestion and Invasion
Following ingestion, food and beverages act as buffers against gastric acid,
facilitating bacteria reaching the small bowel.[5] S Typhi and S Paratyphi
then rapidly cross the gut epithelium. Invasion likely occurs via several
routes as with other Salmonellae: transcellular or by direct invasion of
enterocytes and the M cells that overlie Peyer patches. In contrast to
noninvasive salmonella, invasion causes a minimal inflammatory response.
In S Typhi, this is mediated by a protein that downregulates flagellin (also
known as flagellar H antigen), which is associated with inflammation and
upregulates Vi production.[4]
Initial Dissemination
Intracellular dissemination occurs during the asymptomatic incubation period
of enteric fever and is of primary importance in its pathogenesis. Two-thirds
of the S Typhi or S Paratyphi load during an infection is estimated to be
intracellular.[6] Intracellular dissemination occurs via CD18 cells of the
reticuloendothelial system, including macrophages, dendritic cells,
polymorphonuclear monocytes, and phagocytes.[4] Invasive Salmonellae can
live intracellularly by forming a modified phagosome that does not allow
normal fusion with the cell's phagocyte oxidase complex.[2] In S Typhi
infection, the Vi antigen capsule is thought to play a role. The intracellular
nature of the bacteria safeguards against extracellular antibiotics, limiting the
available options for treatment.[7]
A transient primary bacteremia, detectable by the presence of bacterial
deoxyribonucleic acid, occurs within the first 24 hours of ingestion, possibly
coinciding with this bacterial dissemination.[4] A systemic cytokine response
occurs, whether or not systemic illness ensues. The eosinophil count begins
to drop 5 days before symptoms develop.[2]
Clinical Illness
Increasing fever begins with the persistent secondary bacteremia of
established infection.[4] The gallbladder is colonized through hematogenous
or local spread, more commonly if gallstones or structural abnormalities are
present (see Image. Gallbladder Affected by Typhoid Fever). Lymphoid
tissue within Peyer patches is a site of primary infection, reinfection, and
chronic infection, becoming a secondary source for fecal excretion and
transmission. The proliferation of lymphoid tissue may cause constipation.
Endotoxin-mediated necrosis may occur, resulting in intestinal bleeding,
perforation, or tertiary bacteremia with enteric microorganisms.[4] The total
white count, lymphocytes, platelets, and neutrophils begin to drop with the
onset of symptoms. Immunoglobulin (Ig) IgG, IgM, and IgA antibodies
develop against flagellin and lipopolysaccharide in those who develop
clinical disease but not against Vi.[2]
Host Immunity
CHIM studies demonstrate that immunity to S Typhi and S Paratyphi is
incomplete following clinical infection. If challenged with the same organism
an average of 19 months following the initial S Typhi or S Paratyphi
infection, prior infection reduced the risk of clinical illness by 36% and 57%,
respectively.[2] No symptoms or clinical severity change was seen in those
previously challenged. Likewise, there was no reduction in risk if the second
challenge was with the alternate organism.
Antimicrobial Resistance
Antimicrobial resistance has been a significant threat to the control of enteric
fever since the advent of antibiotic treatment. Multidrug resistance to all 3
first-line drugs, ampicillin, chloramphenicol, and co-trimoxazole, was first
identified in 1972 and became common by the 1980s. The accumulated
resistance genes of MDR strains are encoded on a large conjugative (self-
transmissible) plasmid.[3]
Estimated to have originated in South Asia in the mid-1980s, H58 isolates are
thought to have spread widely due to plasmid-encoded MDR. More
susceptible than other S Typhi genotypes to acquiring mutations or mobile
genetic elements encoding resistance determinants, H58 (renamed clade
4.3.1, along with its derived genotypes) strains are now found throughout
Asia and Southern Africa.[3] With the decreased use of the original first-line
antibiotics, the reproductive fitness cost of maintaining the MDR-encoding
plasmid has led to its lower prevalence in most of Asia. However, the
plasmid has been integrated into the Typhi chromosome several times,
resulting in the fixation of the MDR phenotype in multiple lineages found
mainly in Pakistan and East Africa.
Fluoroquinolone nonsusceptibility, or FQNS, arose as the use of these
antibiotics subsequently became more common.[8] Genomic studies have
shown a variety of mechanisms that confer FQNS:
The stepwise accumulation of 1 to 3 mutations in core chromosomal
genes that directly impact fluoroquinolone binding (QRDR mutations).
The presence of plasma-mediated quinolone resistance (PMQR) genes
in strains already carrying a QRDR mutation.
Or this could include a combination of the above.
A wide variety of QRDR mutations and PMQR plasmids confer
fluoroquinolone resistance. Core chromosomal mutations have arisen
independently in at least 80 different strains around the globe, more
commonly in H58 strains.[3] The number of mutations and the presence of a
PMQR plasmid correlate with the degree of resistance. For example, 1
mutation may only result in a small increase in minimal inhibitory
concentration (MIC) and minimal clinical impact. In contrast, those strains
with 3 QRDR mutations or a PMQR plasmid and 1 or more PMQR mutations
may have a MIC of 1 mg/L or more of ciprofloxacin, denoting a high degree
of resistance. Genomic studies have used the term fluoroquinolone-resistant
to describe these highly nonsusceptible strains.[3]
Most common strains carry genes that confer nonsusceptibility across a wide
range of cephalosporins. However, different mutations may confer differing
levels of non-susceptibility to other cephalosporins. As such, the utility of
nalidixic acid in determining fluoroquinolone resistance levels has been
challenged.[6] Third-generation cephalosporins (eg, ceftriaxone and
cefixime) and azithromycin increased in use following the emergence of
ciprofloxacin resistance. Azithromycin resistance has emerged primarily in
Bangladesh, with at least 13 independent events resulting in 13 different
genotypes, each having 1 to 3 mutations. The gene for extended beta-
lactamase resistance has migrated to the chromosome in some strains.[3] An
XDR strain of Typhi arose in Hyderabad, Pakistan, in 2016. This is a typical
combination of chromosomal MDR genes, IncY plasmid-mediated
ciprofloxacin, and extended beta-lactamase resistance. The XDR strain has
since spread throughout Pakistan and neighboring countries.[3]
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Evaluation
A timely and accurate diagnosis of enteric fever is important to minimize
complications, hospitalizations, and death. However, laboratory confirmation
in the first week of illness is difficult due to the poor performance of
available laboratory testing methodologies. The development of rapid
multiplex diagnostic tests with improved sensitivity and specificity is
urgently needed.[9]
The initial workup must include ruling out other potentially critical causes of
undifferentiated fever as appropriate, such as malaria and meningitis. Without
another obvious diagnosis, a fever on at least 3 of 7 days is sufficient to
suspect enteric fever and initiate treatment for anyone living in an endemic
area, traveling from an endemic area within 28 days, or being a household
contact within 28 days of someone who is a confirmed case of typhoid (acute,
convalescent, or chronic).[WHO. Aware. 2022] Based on this broad
definition of a suspect case, a diversity of undifferentiated febrile illnesses
are unavoidably treated as enteric fever in endemic countries.
Confirmation of typhoid or paratyphoid fever requires S Typhi or S Paratyphi
bacteria or deoxyribonucleic acid from the organism to be isolated from a
normally sterile site by culture or molecular test, respectively. Laboratory
confirmation should be obtained wherever possible. In resource-constrained
settings, the WHO's AWaRe (Access, Watch, Reserve) antibiotic book does
not deem laboratory diagnosis necessary in uncomplicated cases of enteric
fever.[WHO. Aware. 2022]
Culture
The culture of S Typhi or S Paratyphi from a normally sterile site, usually the
blood or bone marrow, is the gold standard for diagnosing enteric fever.
Blood or bone marrow culture is 100% specific and essential to determining
antimicrobial susceptibility and the appropriateness of ongoing treatment.
However, expense and limited technical capacity worldwide limit the
widespread use of blood or bone marrow culture in endemic countries.
Low sensitivity and long lag time further limit the use of culture to diagnose
enteric fever. The preferred and most common culture method, a single blood
culture, is positive in only about 50% to 66% of cases in endemic areas.[6]
[CDC. Yellow Book. 2024] Studies have found a median of 1 to 2.5 cfu/mL
in mixed blood or bone marrow samples.[6] Multiple cultures and larger
samples (7 mL) are recommended to increase sensitivity.[2][14]
[CDC. Yellow Book. 2024] Cultures are most sensitive in the first week of
infection when the viral load in the blood is high; observation for as long as 7
days may be needed before confirming a negative result. In travelers, blood
culture is much more sensitive (>90%).[6]
Due to the larger number of microorganisms in the bone marrow, bone
marrow culture is the most sensitive culture method at 80% to 96%
[CDC. Yellow Book. 2024][6][15] Bone marrow cultures may continue to
show growth for several weeks after the onset of illness and are relatively
unaffected by prior antibiotic use. However, the test is highly invasive and
not routinely used.
Stool culture is inappropriate for diagnosing acute S Typhi and S Paratyphi as
results can also be positive in convalescent disease or chronic carriage. Stool
culture has a low sensitivity and generally does not yield positive results until
after the first week of the disease. Other culture diagnostic methods,
including duodenal content culture via string capsule and urine culture, are
not regularly used to identify S Typhi or S Paratyphi. Where characteristic
rose spots are present, a punch biopsy may yield culturable S Typhi
or S Paratyphi.
Immunological Tests
The Widal agglutination test is a classic serological test that has been
controversial since its development in the late nineteenth century due to its
low sensitivity and specificity.[13] However, it is the most commonly
available test in endemic countries. An antibody titer of greater than 1:160
and greater than 1:80 for anti-H antigen and anti-O antigen is considered the
cutoff level to predict recent infection of S Typhi or S Paratyphi A in an
endemic area—although cutoffs vary somewhat across regions.[15] An
increase in titer over 4 weeks improves test performance but is often omitted
due to cost and the need for a prompt diagnosis.
Various serological tests for diagnosing typhoid are commercially available
and increasingly used due to their low cost and rapid results. However,
sensitivity and specificity are only moderate due to cross-reactivity with
other Salmonella serovars and preexisting antibodies from prior infection.
[2] The best-performing test in a 2017 Cochrane review had a sensitivity of
73.8% and a specificity of 94.5%.[2] Recent identification of alternate
antigens for diagnosis has led to promising results. For example, a test using
lipopolysaccharide and HlyE-specific IgA, validated in Bangladesh and
Nepal, provides greater than 90% sensitivity and specificity.[2]
Some authors have advised against using currently available rapid diagnostic
tests in endemic countries to prevent their misuse. However, the World
Health Organization's Strategic Advisory Group of Experts on in vitro
diagnostics rejected this proposal due to the lack of better alternatives.
Diagnostic algorithms may improve the utility of rapid diagnostic tests.[14]
Molecular Tests
Nucleic acid detection methods such as multiplex polymerase chain reaction
(PCR) or whole genome sequencing allow the genetic signature of the
specific genotype to be determined, including the resistance pattern. Direct
testing of clinical samples results in low sensitivities due to the low
concentrations of bacteria in the blood; combined culture-PCR may improve
sensitivity.[6] Having replaced serotyping in many developed nations,
nucleic acid testing is cost-prohibitive in many settings. Stool PCR may
indicate chronic infection or recent oral typhoid vaccine.
Additional metabolite biomarkers for diagnosing enteric fever and
differentiating acute from chronic infection are under investigation.[16] For
example, the metabolites ethanolamine, phenylalanine, gluconic acid,
monosaccharide, and saccharide show differences in those with S Typhi
infection compared to healthy controls and other febrile illnesses.
[17] Upregulation of hepcidin and altered breakdown of tryptophan are also
highly correlated with S Typhi infection. Molecular studies may also be
combined with other tests. For example, various diagnostic biomarkers and
IgG, IgM, and IgA antibodies could distinguish typhoid from other febrile
illnesses in CHIM studies. Work is ongoing to optimize composite panels and
cutoff standards to maximize sensitivity and specificity.
Other Laboratory Tests
Thick and thin blood smears should be ordered if malaria is a risk. For those
with a prominent headache or neck stiffness, a lumbar puncture with fluid
should be sent for gram stain, culture, and sensitivity. Cerebrospinal fluid is
often normal in enteric fever, although mild pleocytosis (<35 cells/mL) may
be present.[18] About 15% to 25% of people with enteric fever will have
leukopenia and neutropenia. Among children younger than 5, 41% have
leukocytosis, and 71% have anemia.[2] Liver function tests may be elevated,
similar to viral hepatitis. An electrocardiogram, ultrasound, or x-ray may be
required to rule out complications such as myocarditis, abscess, or intestinal
perforation.
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Treatment / Management
Antibiotic therapy is the mainstay of treatment for enteric fever. Treatment
should be started as soon as the diagnosis is suspected, as delays prolong the
course of illness and result in a higher risk of complications and severe
disease. While most patients with enteric fever are hospitalized in the United
States and other nonendemic areas, most people with uncomplicated illness in
endemic countries receive outpatient treatment.[2]
Empiric Antibiotic Treatment
The AWaRe (access, watch, reserve) antibiotic book provides global
recommendations for empiric treatment choice based on the severity of
illness at presentation and the prevalence of ciprofloxacin resistance in the
likely place of acquisition.[3][WHO. Aware. 2022] A cutoff of 10% is
common, although this was not defined in the AWaRe document.
[6] Antibiotic dosages should be adjusted for renal function in adults and
children. Treatment should be extended if clinical improvement has not
occurred and the patient has not been afebrile for at least 48 hours.
[WHO. Aware. 2022]
Where the prevalence of ciprofloxacin resistance is high, including in most of
Asia and sub-Saharan Africa, azithromycin is the drug of choice for adults
with mild cases of enteric fever. A loading dose of 1 g azithromycin is given
on day 1, followed by 500 mg once daily for 7 days. For severe cases,
ceftriaxone 2 g intraveneously daily for 10 days is the empiric drug of choice.
In areas with a low prevalence of fluoroquinolone resistance, ciprofloxacin is
the drug of choice. In adults, ciprofloxacin 500 mg orally every 12 hours is
given for 7 days in mild cases and 10 days in severe.[WHO. Aware. 2022]
Based on several Cochrane reviews, these antibiotics have roughly
comparable effectiveness against enteric fever caused by susceptible
organisms in terms of tolerance and clinical and biological failure.
[6] [10] Azithromycin has fewer failures than fluoroquinolones (odds
ratio, .48; 95% confidence interval, .26-.89). Ceftriaxone may have a higher
relapse rate when compared to azithromycin.[6]
The WHO recommends the same empiric antibiotics for children. The
antibiotic dosage must be adjusted to the child's weight. Ciprofloxacin is
given orally at a dosage of 15 mg/kg/dose every 12 hours; 20 mg/kg/dose of
azithromycin is given orally every 24 hours; and 80 mg/kg/dose of
ceftriaxone is given intravenously every 24 hours.[WHO. Aware. 2022]
Azithromycin is recommended as empiric treatment for uncomplicated
illness, and carbapenem for more severe disease for travelers and residents in
areas with high rates of XDR, such as Pakistan or Iraq.[CDC. Yellow
Book. 2024] Azithromycin is given as a loading dose of 1g on day 1 and then
500 mg once daily for 7 days. Meropenem is the most commonly used
carbapenem, with 20 mg/kg given 3 times daily.[11]
Where available, locally determined AMR patterns or national guidelines
provide additional insight into the choice of empiric treatment. In the United
States, most S Typhi and S Paratyphi infections are not susceptible to
ciprofloxacin, with greater than 90% of resistant infections occurring among
travelers returning from South Asia.[CDC. Yellow Book. 2024]
Azithromycin and ceftriaxone are recommended for empiric treatment. If the
patient has traveled to Pakistan or Iraq or has not traveled internationally,
empiric treatment for XDR should be initiated.
(Refer to the Epidemiology section for more information on the global
distribution of AMR).
Ongoing Treatment
If the initial antibiotic is effective, fever decreases over the following 3 to 5
days, and treatment is continued for the recommended interval. If fever
persists for more than 5 days, a search for a persistent locus of infection or
treatment with alternate antibiotics should be considered, based on bacterial
susceptibility whenever possible.[CDC. Yellow Book. 2024] Defervescence
can be slow with cephalosporins.[12] Cefixime can be an alternative to
ceftriaxone, although its relative effectiveness may be lower than
fluoroquinolones.[10] This is likely due to cefixime's low intracellular
penetrance. Ofloxacin demonstrates similar performance to ciprofloxacin.[6]
Other Antibiotic Regimens
While susceptibility to chloramphenicol, ampicillin, and co-trimoxazole has
re-emerged in some areas, they are no longer recommended as first-line
agents due to the persistent threat of MDR.[2] They can be used as
alternatives only in areas or infections with known sensitivity.[13] Studies
comparing current WHO-recommended therapies to chloramphenicol have
shown these to be equally effective.[2][6]
Due to S Typhi and S Paratyphi's dual intracellular and extracellular nature,
dual antibiotic use targeting these 2 spaces is proposed to improve clinical
outcomes and decrease the probability of resistance emerging.[6] A small
randomized control trial in Nepal found that adding azithromycin (principally
intracellular activity) to oral cefixime or iv ceftriaxone (principally
extracellular activity) halved the time it took to clear the fever.[12] A large-
scale outpatient double-blinded one-to-one randomized control trial is
ongoing to compare azithromycin and cefixime versus azithromycin alone in
uncomplicated typhoid.[6] Results are expected in late 2024.
For XDR strains, a combination of azithromycin and meropenem versus
meropenem or azithromycin alone was not found to significantly change the
time to defervescence or the treatment failure rate.[11] The cost of additional
therapy must be a consideration in treatment choice in resource-constrained
settings, with meropenem costing an order of magnitude more than
azithromycin and requiring inpatient treatment.
The oral carbamazepine tebipenem is effective in vitro against S Typhi
and S Paratyphi, alone or synergistically with azithromycin.[6] Licensed in
Japan for pediatric respiratory infections, its use in enteric fever is being
explored. The risks and benefits of deploying an oral carbapenem must be
carefully considered in areas with unregulated prescribing and significant
resistance in other Enterobacteriaceae.[6]
Supportive and Other Treatment
Outpatient treatment consists of oral antibiotics, antipyretics, and
commercially available oral replacement fluids when required for vomiting
and diarrhea. For severe illness where supportive measures are needed,
treatment must be on an inpatient basis. Intravenous fluids and blood
products should aggressively replace losses due to diarrhea or bleeding.
Ventilation and oxygenation may be required for pulmonary complications.
Steroids are recommended for severe illness, particularly where central
nervous system involvement and shock are found.[12] This is given as
dexamethasone 3 mg/kg intravenously over 30 minutes, followed by 1 mg/kg
every 6 hours for a total of 8 doses. (Refer to the Complications section for
further discussion on managing complications).
Go to:
Differential Diagnosis
Enteric fever presents as an undifferentiated acute febrile illness resembling
multiple other infectious diseases (most commonly confused with malaria).
Factors such as time since returning home from travel, ill travel partners, or
unusual exposures may suggest or exclude particular diagnoses. While
symptoms vary in frequency across different conditions, most are not
sufficiently specific upon presentation to be useful to rule in or out particular
conditions. The CDC Yellow Book describes the approach to a febrile
returning traveler, with a complete list of potential illnesses and their
associated incubation periods.[CDC. Yellow Book. 2024]
The parasite Plasmodium falciparum causes the most deadly form of
malaria. This parasite has an incubation period of 8 to 11 days, while most
other Plasmodium species have an incubation period of 9 to 17 days. For P
malaria, the incubation period is usually 18 to 40 days but can rarely last
several years. Rigors are more commonly seen with malaria than with enteric
fever. The use of preventive medication does not rule out the diagnosis.
Amoebiasis is a less common parasitic infection in the differential. Like
enteric fever, amoebiasis is transmitted via the fecal-oral route and can
present with fever, bloody diarrhea, and abdominal pain.
The many bacterial illnesses on the differential include leptospirosis, scrub
and murine typhus, bacterial meningitis, brucellosis, and bacterial
gastroenteritis. Those with leptospirosis may have a history of contact with
animals or adventure sports and contact with mud. People with typhus may
be found to have a bite mark initially resembling a cigarette burn but
developing into black eschar. Those with bacterial gastroenteritis may be
more likely to have profuse diarrhea.
A wide variety of viral illnesses can also present with an undifferentiated
fever. These include influenza, COVID-19, dengue, viral hepatitis,
Chikungunya, viral meningitis, yellow fever, Ebola viruses, and many others,
depending on the location of residence or travel. Cough is usually more
prominent in influenza and COVID, with associated upper viral symptoms.
People with dengue or "breakbone" fever may have severe arthralgias.
Returning home more than 6 days before the onset of symptoms would
exclude yellow fever, dengue, and Chikungunya.
Go to:
Prognosis
Enteric fever can result in serious complications and death, particularly if
antibiotics are delayed or inadequate. The overall case-fatality rate
for S Typhi infection has fallen drastically from 10% to 30% in the pre-
antibiotic era to less than 1% in patients who receive early treatment
today. The overall pooled case fatality rate is an estimated 4.2% in non-
surgical hospital sites and varies significantly across regions: 0.9% in Asia,
5.4% in Africa, 7.2% in Oceania, 6.7% in the Americas, and 1% in Europe.
[10] Among cases in global non-hospital sites, the estimate is 0.2%.
Go to:
Complications
Complications usually occur 2 to 3 weeks after the onset of illness. In a 2020
global systematic review and meta-analysis of typhoid fever complications,
26% of lab-confirmed, predominantly hospitalized cases of typhoid
experienced a complication.[10] Reviews completed in 2018 and 2019 found
similar results.[2][6][10] The frequency of specific complications depends on
age, sex, pre-existing medical conditions, and geographic region.
Gastrointestinal Complications
Children younger than 5 present more frequently with diarrhea and
dehydration than adults and older children. Hepatitis is also reported to occur
in 36% of children in this age group.[2] Terminal ileum perforation occurs in
about 1.3% of hospitalized confirmed cases of enteric fever due to
hypertrophy and necrosis of Peyer patches.[10] Intestinal perforation occurs
approximately 2 times more frequently in men than women, mainly in people
older than 15.[10] Intestinal perforation is more common in sub-Saharan
Africa (7.6%) than in Asia (0.7%). The rate of intestinal perforation is
increasing in areas with increasing AMR typhoid. Gastrointestinal bleeding
can also occur, although it is rarely severe.
Surgical repair and peritoneal lavage is indicated for intestinal perforation.
Resultant peritonitis and septic shock require treatment with broad-spectrum
antibiotics, inotropes, and fluid replacement in an intensive care unit setting.
Blood replacement may be necessary for gastrointestinal hemorrhage.
[11] The average hospital stay for surgically treated perforation is 18 days.[2]
Even with treatment, the case fatality rate for intestinal perforation or
hemorrhage can be high. For intestinal perforation, higher rates occur in
confirmed cases in Africa, ranging from 13.7% to 28.0% across sites, than in
Asia, where the range is 0% to 8.4%.[10] The median case mortality for
intestinal perforation in Asia is 4.6% and 19.7% in Africa, likely owing to
more difficult access to quality medical care services in Africa.[10] A
hallmark of severe typhoid, intestinal perforations in endemic countries
should be considered probable enteric fever cases. While a late marker of
disease, reporting these can help identify outbreaks in countries with
underdeveloped enteric fever surveillance systems.[3]
Neuropsychiatric Complications
Delirium is a common complication of enteric fever, occurring in a quarter of
confirmed hospitalized cases. Neurological manifestations are otherwise not
common in adults, manifesting with meningitis, encephalopathy, sleep
irregularities, acute psychosis, myelitis, ataxia, muscle rigidity, and focal
neurologic deficits.[2][12] Delirium, encephalopathy, and febrile seizures
occur more often in school-aged children.[10] Clinical symptoms are thought
to be due to cortical irritation by typhoid toxin. Corticosteroids have been
suggested for severe cases of encephalopathy.[13]
Other Complications
Anemia is one of the most common complications of enteric fever, affecting
up to one-fifth of hospitalized cases. Anemia is more common in South Asia
than anywhere else in the world.[2] One study showed a miscarriage rate of 1
in 6 in pregnant women with confirmed typhoid.[10] Widespread
dissemination of bacteria can cause multiorgan failure due to disseminated
intravascular coagulation and septicemia.[14] Focal abscesses are
uncommon. Lung complications, including bronchitis and pneumonia, occur
primarily in children and patients with lung cancer, glucocorticoid use, and
other structural lung diseases.[15]
Relapse
Relapse is defined as a recurrence of symptoms with laboratory confirmation
of S Typhi from a normally sterile site within 1 month of completing an
appropriate course of antimicrobial treatment and resolution of symptoms.
Relapse occurs in less than 10% of patients, usually 1 to 3 weeks after
clinical recovery. Further antibiotic treatment is required.
Chronic Carriage
Convalescent carriage of S Typhi and S Paratyphi can continue for a few
weeks to months after treatment of enteric fever. Usually, this clears without
further treatment. However, 1% to 4% of patients with typhoid fever become
chronic carriers, demonstrating shedding for at least 12 months after finishing
an appropriate course of antibiotics.[CDC. Yellow Book. 2024] Chronic
carriage is less common with adequate antibiotic treatment and S Paratyphi
infections.
Confirmation of chronic carriage is difficult due to intermittent shedding and
low organism levels in the stool. A stool culture or polymerase chain reaction
is used to determine persistent carriage. Sufficient time must elapse between
finishing antibiotics and testing to ensure antibiotic clearance. PCR testing
can also detect bacterial DNA well after viable bacteria are cleared. An anti-
Vi antibody-based test has been developed for use in nonendemic areas but is
unreliable in medium- to high-prevalence areas where regular infection or
exposure results in higher baseline titers.[2]
Underlying biliary structural abnormalities and cholelithiasis are underlying
risk factors for chronic carriage, which are more commonly seen in women
and older individuals. Chronic carriage of S Typhi and S Paratyphi for
gallstones is associated with biofilm development.[2] Chronic carriers of
typhoid have 4.28 times the risk of developing biliary cancer compared to the
general population.[12] Kidney stones and, in Africa, S
haematobium infections increase the odds of urinary tract infection and
chronic urinary carriage.
Current evidence for treating chronic carriage is lacking. The 2003 WHO
guidelines and a 2022 systematic review are based on evidence that precedes
1990.[6][12] Cholecystectomy cures chronic carriage in 70% to 90% of
cases.[12] However, because it carries significant anesthetic and surgical risk,
cholecystectomy is only recommended if other indications for surgery exist.
[2][6] Household members of chronic typhoid carriers may be advised to be
vaccinated.
Go to:
Review Questions
Access free multiple choice questions on this topic.
Comment on this article.
Figure
Rose Spots on Chest, Patient With Typhoid Fever. This condition is due to
the bacterium Salmonella Typhi. Symptoms of typhoid fever may include a
sustained fever as high as 103 to 104 °F (39 to 40 °F), weakness, stomach
pains, (more...)
Figure
Gallbladder Affected by Typhoid Fever. The image shows a gallbladder with
cholecystitis and ulceration from typhoid fever, a digestive system disease
caused by Salmonella Tyhpi. Contributed by CN Farmer; Centers for Disease
Control and Prevention (more...)
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Continuing Education Activity
Introduction
Etiology
Epidemiology
Pathophysiology
History and Physical
Evaluation
Treatment / Management
Differential Diagnosis
Prognosis
Complications
Deterrence and Patient Education
Enhancing Healthcare Team Outcomes
Review Questions
References
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