Notes
Notes
Notes
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These species can be classified into groups by the features that they share e.g. all
mammals have bodies covered in hair, feed young from mammary glands and have
external ears (pinnas)
Organisms were first classified by a Swedish naturalist called Linnaeus in a way that
allows the subdivision of living organisms into smaller and more specialised groups
The species in these groups have more and more features in common the more
subdivided they get
He named organisms in Latin using the binomial system where the scientific name
of an organism is made up of two parts starting with the genus (always given
a capital letter) and followed by the species (starting with a lower case letter)
When typed binomial names are always in italics (which indicates they are Latin)
e.g. Homo sapiens
The sequence of classification
is: Kingdom, Phylum, Class, Order, Family, Genus, Species
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Dichotomous Keys
Keys are used to identify organisms based on a series of questions about their
features
Dichotomous means ‘branching into two’ and it leads the user through to the name of
the organism by giving two descriptions at a time and asking them to choose
Each choice leads the user onto another two descriptions
In order to successfully navigate a key, you need to pick a single organism to start
with and follow the statements from the beginning until you find the name
You then pick another organism and start at the beginning of the key again,
repeating until all organisms are named
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1.1.3 Concept & Uses of Classification Systems: Extended
Reflecting Evolutionary Relationships: Extended
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DNA sequences can show how closely related different species are
The sequences above show that Brachinus armiger and Brachinus hirsutus
are more closely related than any other species in the list as their DNA sequences
are identical except for the last but one base (B.armiger has a T in that position
whereas B.hirsutus has an A)
As DNA base sequences are used to code for amino acid sequences in proteins,
the similarities in amino acid sequences can also be used to determine how closely
related organisms are
The first division of living things in the classification system is to put them into one
of five kingdoms. They are:
o Animals
o Plants
o Fungi
o Protoctists
o Prokaryotes
o
Main features of all animals:
o they are multicellular
o their cells contain a nucleus but no cell walls or chloroplasts
o they feed on organic substances made by other living things
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Main features of all plants:
o they are multicellular
o their cells contain a nucleus, chloroplasts and cellulose cell walls
o they all feed by photosynthesis
Several main features are used to place organisms into groups within the animal
kingdom
Vertebrates
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Invertebrates
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Invertebrate Table
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The Five Kingdoms: Extended
The first division of living things in the classification system is to put them into one
of five kingdoms
They are:
o Animals
o Plants
o Fungi
o Protoctists
o Prokaryotes
Main features of all fungi (e.g. moulds, mushrooms, yeast)
o usually multicellular
o cells have nuclei and cell walls not made from cellulose
o do not photosynthesize but feed by saprophytic (on dead or decaying
material) or parasitic (on live material) nutrition
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Two examples of protoctist cells
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The Plant Kingdom: Extended
At least some parts of any plant are green, caused by the presence of the
pigment chlorophyll which absorbs energy from sunlight for the process
of photosynthesis
The plant kingdom includes organisms such as ferns and flowering plants
Ferns
Flowering plants
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Wheat plants are monocotyledons Sunflowers are dicotyledons
2) Leaves
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Viruses: Extended
Viruses are not part of any classification system as they are not considered living
things
They do not carry out the seven life processes for themselves, instead they take
over a host cell’s metabolic pathways in order to make multiple copies of
themselves
Virus structure is simply genetic material (RNA or DNA) inside a protein coat
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2. Organization of the Organism
2.1.1 Cell Structure
Plants
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A typical plant cell
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Cell Structures Found in Both Animal and Plant Cells Table
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An animal and plant cell as seen under a light microscope
Bacteria Cells
Bacteria, which have a wide variety of shapes and sizes, all share the following
biological characteristics:
o They are microscopic single-celled organisms
o Possess a cell wall (made of peptidoglycan, not cellulose), cell
membrane, cytoplasm and ribosomes
o Lack a nucleus but contain a circular chromosome of DNA that floats in
the cytoplasm
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o Plasmids are sometimes present - these are small rings of DNA (also
floating in the cytoplasm) that contain extra genes to those found in the
chromosomal DNA
o They lack mitochondria, chloroplasts and other membrane-bound
organelles found in animal and plant cells
Some bacteria also have a flagellum (singular) or several flagella (plural). These
are long, thin, whip-like tails attached to bacteria that allow them to move
Examples of bacteria include:
o Lactobacillus (a rod-shaped bacterium used in the production of yoghurt
from milk)
o Pneumococcus (a spherical bacterium that acts as the pathogen causing
pneumonia)
Within the cytoplasm, the following organelles are visible in almost all cells except
prokaryotes when looking at higher magnification (ie using an electron microscope):
o Mitochondria (singular: mitochondrion) are organelles found throughout the
cytoplasm
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o Ribosomes are tiny structures that can be free within the cytoplasm or
attached to a system of membranes within the cell known as Endoplasmic
Reticulum
o Endoplasmic reticulum studded with ribosomes looks rough under the
microscope; this gives rise to its name of Rough Endoplasmic
Reticulum (often shortened to R.E.R.)
o Vesicles can also be seen using a higher magnification - these are small
circular structures found moving throughout the cytoplasm
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Structures in a plant cell visible under a light microscope and an electron
microscope
Specialised Cells
Specialised cells in animals
Specialised cells are those which have developed certain characteristics in order
to perform particular functions. These differences are controlled by genes in the
nucleus
Cells specialise by undergoing differentiation: this is a process by which cells
develop the structure and characteristics needed to be able to carry out their
functions
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Specialised Cells in Animals Table
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Ciliated cell
Nerve cell
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Sperm cell
Egg cell
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Examples of specialised cells in plants:
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Diagrams of specialised cells in plants:
Xylem structure
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Palisade mesophyll cell
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Levels of organisation
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Your syllabus states that you should be able to identify the different levels of
organisation in drawings, diagrams and images of familiar material
An example of this is shown in the exam question below:
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2.1.3 Magnification Formula
Magnification Formula
Calculating magnification and specimen size using millimetres as units
Magnification equation
Rearranging the equation to find things other than the magnification becomes easy
when you remember the triangle - whatever you are trying to find, place your finger
over it and whatever is left is what you do, so:
o Magnification = image size / actual size
o Actual size = image size / magnification
o Image size = magnification x actual size
Remember magnification does not have any units and is just written as ‘x 10’ or ‘x 5000’
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Worked example using the magnification equation
The table below shows how millimetres are related to two other measures of length
What this basically means is that 1mm = 1000µm and 1cm = 10,000µm
This usually comes up in questions where you have two different units and you need
to ensure that you convert them both into the same unit before proceeding with the
calculation
For example:
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Example extended magnification question
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3. Movement into & out of Cells
3.1.1 Diffusion
For living cells, the principle of the movement down a concentration gradient is the
same, but the cell is surrounded by a cell membrane which can restrict the free
movement of the molecules
The cell membrane is a partially permeable membrane - this means it allows some
molecules to cross easily, but others with difficulty or not at all
The simplest sort of selection is based on the size of the molecules
Diffusion helps living organisms to:
o obtain many of their requirements
o get rid of many of their waste products
o carry out gas exchange for respiration
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Examples of diffusion in living organisms
You will need to learn examples of substances that organisms obtain by diffusion
Don’t forget that plants require oxygen for respiration at all times, as well
as carbon dioxide for photosynthesis when conditions for photosynthesis are right
(e.g. enough light and a suitable temperature)
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Brownian motion
The bigger a cell or structure is, the smaller its surface area to volume ratio is,
slowing down the rate at which substances can move across its surface
Many cells which are adapted for diffusion have increased surface area in some
way - eg root hair cells in plants (which absorb water and mineral ions) and cells
lining the ileum in animals (which absorb the products of digestion)
Cell
adaptations for diffusion
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The highly folded surface of the small intestine increases its surface area
Distance
The smaller the distance molecules have to travel the faster transport will occur
This is why blood capillaries and alveoli have walls which are only one cell thick,
ensure the rate of diffusion across them is as fast as possible
Temperature
The higher the temperature, the faster molecules move as they have more energy
This results in more collisions against the cell membrane and therefore a faster rate
of movement across them
Concentration Gradient
The greater the difference in concentration either side of the membrane, the faster
movement across it will occur
This is because on the side with the higher concentration, more random collisions
against the membrane will occur
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3.1.3 Water
Water is important for all living organisms as many substances are able to
dissolve in it (it is a solvent)
This makes it incredibly useful and essential for all life on Earth
Water is important as a solvent in the following situations within organisms:
o Dissolved substances can be easily transported around organisms - eg
xylem and phloem of plants and dissolved food molecules in the blood
o Digested food molecules are in the alimentary canal but need to be moved
to cells all over the body - without water as a solvent this would not be able
to happen
o Toxic substances such as urea and substances in excess of requirements
such as salts can dissolve in water which makes them easy to remove from
the body in urine
o Water is also an important part of the cytoplasm and plays a role in
ensuring metabolic reactions can happen as necessary in cells
Water as a solvent
3.1.4 Osmosis
All cells are surrounded by a cell membrane which is partially permeable
Water can move in and out of cells by osmosis
Osmosis is the diffusion of water molecules from a dilute solution (high
concentration of water) to a more concentrated solution (low concentration of
water) across a partially permeable membrane
In doing this, water is moving down its concentration gradient
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The cell membrane is partially permeable which means it allows small
molecules (like water) through but not larger molecules (like solute molecules)
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Potatoes are usually used in osmosis experiments to show how the concentration of
a solution affects the movement of water, but radishes can be used too
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o There has been no net movement of water as the concentration in both the
plant tissue and the solution surrounding it must be equal
o Remember that water will still be moving into and out of the plant tissue, but
there wouldn’t be any net movement in this case
When water moves into a plant cell, the vacuole gets bigger, pushing the cell
membrane against the cell wall
Water entering the cell by osmosis makes the cell rigid and firm
This is important for plants as the effect of all the cells in a plant being firm is
to provide support and strength for the plant - making the plant stand upright with
its leaves held out to catch sunlight
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The pressure created by the cell wall stops too much water entering and prevents
the cell from bursting
If plants do not receive enough water the cells cannot remain rigid and firm (turgid)
and the plant wilts
Osmosis: Extended
Osmosis is the net movement of water molecules from a region of higher water
potential (dilute solution) to a region of lower water potential (concentrated
solution), through a partially permeable membrane
It can get a little confusing to talk about the 'concentration of water' when we also
talk about solutions being ‘concentrated’ (having a lot of solute in them), so instead
we can say that a dilute solution has a high water potential (the right-hand side of
the diagram below) and a concentrated solution has a low water potential (the
left-hand side of the diagram below):
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Osmosis in Animals & Plants: Extended
Plant cells in solutions of different concentrations
When plant cells are placed in a solution that has a higher water potential (dilute
solution) than inside the cells (e.g. distilled water) then water moves into the plant
cells via osmosis
These water molecules push the cell membrane against the cell wall, increasing
the turgor pressure in the cells which makes them turgid
When plant cells are placed in a concentrated solution (with a lower water potential
than inside the cells) water molecules will move out of the plant cells by osmosis,
making them flaccid
o If plant cells become flaccid it can negatively affect the plant's ability to
support itself
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If looked at underneath the microscope, the plant cells might be plasmolysed,
meaning the cell membrane has pulled away from the cell wall
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Effect of osmosis on animal cells
Active transport is the movement of particles through a cell membrane from a region
of lower concentration to a region of higher concentration using energy from
respiration
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The process of active transport
o uptake of glucose by epithelial cells in the villi of the small intestine and by
kidney tubules in the nephron
o uptake of ions from soil water by root hair cells in plants
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Protein Carriers: Extended
Active transport works by using carrier proteins embedded in the cell membrane to
pick up specific molecules and take them through the cell membrane against their
concentration gradient:
1.
1. Substance combines with carrier protein molecule in the cell membrane
2. Carrier transports substances across membrane using energy from
respiration to give them the kinetic energy needed to change shape and
move the substance through the cell membrane
3. Substance released into cell
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4. Biological Molecules
4.1.1 Chemicals & Life
Chemical Elements
Most of the molecules in living organisms fall into three categories: carbohydrates,
proteins and lipids
These all contain carbon and so are described as organic molecules
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Glycogen, cellulose and starch are all made from glucose molecules
Fats
Structure of a triglyceride
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Proteins
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4.1.2 Food Tests
Food Tests
Test for glucose (a reducing sugar)
The
Benedict's test for glucose
We can use iodine to test for the presence or absence of starch in a food sample.
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The iodine test for starch
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The Biuret test for protein
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Test for vitamin C
DNA, or deoxyribonucleic acid, is the molecule that contains the instructions for
growth and development of all organisms
It consists of two strands of DNA wound around each other in what is called
a double helix
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DNA, chromosomes and the nucleus
A nucleotide
All nucleotides contain the same phosphate and deoxyribose sugar, but differ from
each other in the base attached
There are four different bases, Adenine (A), Cytosine (C), Thymine (T) and
Guanine (G)
The bases on each strand pair up with each other, holding the two strands of DNA in
the double helix
The bases always pair up in the same way:
o Adenine always pairs with Thymine (A-T)
o Cytosine always pairs with Guanine (C-G)
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DNA base pairs
The phosphate and sugar section of the nucleotides form the ‘backbone’ of the DNA
strand (like the sides of a ladder) and the base pairs of each strand connect to form
the rungs of the ladder
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The DNA helix is made from two strands of DNA held together by hydrogen bonds
It is this sequence of bases that holds the code for the formation of proteins
5. Enzymes
What Are Enzymes?
Enzymes are:
o Catalysts that speed up the rate of a chemical reaction without being
changed or used up in the reaction
o Proteins
o Biological catalysts (biological because they are made in living cells,
catalysts because they speed up the rate of chemical reactions without being
changed)
o Necessary to all living organisms as they maintain reaction speeds of all
metabolic reactions (all the reactions that keep an organism alive) at a rate
that can sustain life
For example, if we did not produce digestive enzymes, it would take
around 2 - 3 weeks to digest one meal; with enzymes, it takes around
4 hours
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Enzymes are specific to one particular substrate (molecule/s that get broken down
or joined together in the reaction) as the enzyme is a complementary shape to the
substrate
The product is made from the substrate(s) and is released
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Investigating the Effect of pH on Amylase
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5.1.3 Enzyme Action & Specificity: Extended
Enzyme Action & Specificity: Extended
Enzymes are specific to one particular substrate(s) as the active site of the
enzyme, where the substrate attaches, is a complementary shape to the substrate
This is because the enzyme is a protein and has a specific 3-D shape
This is known as the lock and key hypothesis
When the substrate moves into the enzyme’s active site they become known as
the enzyme-substrate complex
After the reaction has occurred, the products leave the enzyme’s active site as they
no longer fit it and it is free to take up another substrate
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1. Enzymes and substrates randomly move about in solution
2. When an enzyme and its complementary substrate randomly collide - with the substrate
fitting into the active site of the enzyme - an enzyme-substrate complex forms, and the
reaction occurs.
3. A product (or products) forms from the substrate(s) which are then released from the
active site. The enzyme is unchanged and will go on to catalyse further reactions.
Enzymes are proteins and have a specific shape, held in place by bonds
This is extremely important around the active site area as the specific shape is what
ensures the substrate will fit into the active site and enable the reaction to
proceed
Enzymes work fastest at their ‘optimum temperature’ – in the human body, the
optimum temperature is 37⁰C
Heating to high temperatures (beyond the optimum) will break the bonds that hold
the enzyme together and it will lose its shape -this is known as denaturation
Substrates cannot fit into denatured enzymes as the shape of their active site has
been lost
Denaturation is irreversible - once enzymes are denatured they cannot regain their
proper shape and activity will stop
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Effect of temperature on enzyme activity
Increasing the temperature from 0⁰C to the optimum increases the activity of
enzymes as the more energy the molecules have the faster they move and the
number of collisions with the substrate molecules increases, leading to a faster
rate of reaction
This means that low temperatures do not denature enzymes, they just make them
work more slowly
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Graph showing the effect of temperature on the rate of enzyme activity
The optimum pH for most enzymes is 7 but some that are produced in acidic
conditions, such as the stomach, have a lower optimum pH (pH 2) and some that are
produced in alkaline conditions, such as the duodenum, have a higher optimum pH
(pH 8 or 9)
If the pH is too high or too low, the bonds that hold the amino acid chain together to
make up the protein can be destroyed
This will change the shape of the active site, so the substrate can no longer fit into it,
reducing the rate of activity
Moving too far away from the optimum pH will cause the enzyme to denature and
activity will stop
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Effect of pH on enzyme activity
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Graph showing the effect of pH on rate of activity for an enzyme from the duodenum
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6. Plant Nutrition
6.1.1 Photosynthesis
Green plants make the carbohydrate glucose from the raw materials carbon
dioxide and water
At the same time oxygen is made and released as a waste product
The reaction requires energy which is obtained by the pigment chlorophyll trapping
light from the Sun
So photosynthesis can be defined as the process by which plants manufacture
carbohydrates from raw materials using energy from light
It can be summed up in the following equation:
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6.1.2 Chlorophyll
Chlorophyll is a green pigment that is found in chloroplasts within plant cells
o It is this pigment which gives plants their characteristic green colour
Chlorophyll transfers energy from light into energy in chemicals, for the synthesis of
carbohydrates
o It is essential for photosynthesis to occur
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The fate of glucose
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Carbohydrates contain the elements carbon, hydrogen and oxygen but proteins, for
example, contain nitrogen as well (and certain amino acids contain other elements
too)
Other chemicals in plants contain different elements as well, for example chlorophyll
contains magnesium and nitrogen
This means that without a source of these elements, plants cannot photosynthesise
or grow properly
Plants obtain these elements in the form of mineral ions actively absorbed from
the soil by root hair cells
‘Mineral’ is a term used to describe any naturally occurring inorganic substance
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6.1.5 Investigating the Need for Chlorophyll, Light & Carbon Dioxide
Investigating the Need for Chlorophyll
Although plants make glucose in photosynthesis, leaves cannot be tested for its
presence as the glucose is quickly used, converted into other substances and
transported or stored as starch.
Starch is stored in chloroplasts where photosynthesis occurs so testing a leaf for
starch is a reliable indicator of which parts of the leaf are photosynthesising.
Leaves can be tested for starch using the following procedure:
o A leaf is dropped in boiling water to kill the cells and break down the cell
membranes
o The leaf is left for 5-10 minutes in hot ethanol in a boiling tube. This removes
the chlorophyll so colour changes from iodine can be seen more clearly
o The leaf is dipped in boiling water to soften it
o The leaf is spread out on a white tile and covered with iodine solution
o In a green leaf, the entire leaf will turn blue-black as photosynthesis is
occuring in all areas of the leaf
o This method can also be used to test whether chlorophyll is needed for
photosynthesis by using a variegated leaf (one that is partially green and
partially white)
o The white areas of the leaf contain no chlorophyll and when the leaf is
tested only the areas that contain chlorophyll stain blue-black
o The areas that had no chlorophyll remain orange-brown as no
photosynthesis is occurring here and so no starch is stored
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Testing a variegated leaf for starch
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Care must be taken when carrying out this practical as ethanol is extremely
flammable, so at that stage of the experiment the Bunsen burner should be turned
off.
The safest way to heat the ethanol is in an electric water bath rather than using a
beaker over a Bunsen burner with an open flame
The same procedure as above can be used to investigate if light is needed for
photosynthesis
Before starting the experiment the plant needs to be destarched by placing in a dark
cupboard for 24 hours
This ensures that any starch already present in the leaves will be used up and
will not affect the results of the experiment
Following destarching, a leaf of the plant can be partially covered with aluminium
foil and the plant placed in sunlight for a day
The leaf can then be removed and tested for starch using iodine
The area of the leaf that was covered with aluminium foil will remain orange-
brown as it did not receive any sunlight and could not photosynthesise, while the
area exposed to sunlight will turn blue-black
This proves that light is necessary for photosynthesis and the production of starch
Destarch two plants by placing in the dark for a prolonged period of time
Place one plant in a bell jar which contains a beaker of sodium hydroxide (which
will absorb carbon dioxide from the surrounding air)
Place the other plant in a bell har which contains a beaker of water (control
experiment), which will not absorb carbon dioxide from the surrounding air
Place both plants in bright light for several hours
Test both plants for starch using iodine
The leaf from the plant placed near sodium hydroxide will remain orange-brown as
it could not photosynthesise due to lack of carbon dioxide
The leaf from the plant placed near water should turn blue-black as it had all
necessary requirements for photosynthesis
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An example setup for an experiment to test whether carbon dioxide is necessary for
photosynthesis in plants.
This can be done by moving a lamp different distances away from the beaker
containing the pondweed
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Investigating the effect of changing light intensity on the rate of photosynthesis
This can be done by changing the temperature of the water in the beaker
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nvestigating the effect of changing temperature on the rate of photosynthesis
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Investigating the effect of changing carbon dioxide concentration on the rate of
photosynthesis
Care must be taken when investigating a condition to keep all other variables
constant in order to ensure a fair test
For example, when investigating changing light intensity, a glass tank should be
placed in between the lamp and the beaker to absorb heat from the lamp and so
avoid changing the temperature of the water as well as the light intensity
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Investigating Gas Exchange
Plants are respiring all the time and so plant cells are taking in oxygen and
releasing carbon dioxide as a result of aerobic respiration
Plants also photosynthesise during daylight hours, for which they need to take in
carbon dioxide and release the oxygen made in photosynthesis
At night, plants do not photosynthesise but they continue to respire, meaning
they take in oxygen and give out carbon dioxide
During the day, especially when the sun is bright, plants are photosynthesising at
a faster rate than they are respiring, so there is a net intake of carbon dioxide
and a net output of oxygen
We can investigate the effect of light on the net gas exchange in an aquatic plant
using a pH indicator such as hydrogencarbonate indicator
This is possible because carbon dioxide is an acidic gas when dissolved in water
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Hydrogencarbonate indicator shows the carbon dioxide concentration in solution
The table below shows the colour that the indicator turns at different levels of
carbon dioxide concentration
Several leaves from the same plant are placed in stoppered boiling tubes containing
some hydrogencarbonate indicator
The effect of light can then be investigated over a period of a few hours
Results from a typical experiment are shown in the table below:
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6.1.8 Photosynthesis Chemical Equation: Extended
The light energy is converted into chemical energy in the bonds holding the atoms
in the glucose molecules together
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6.1.9 Limiting Factors: Extended
Limiting Factors: Extended
If a plant is given unlimited sunlight, carbon dioxide and water and is at a warm
temperature, the limit on the rate (speed) at which it can photosynthesise is its own
ability to absorb these materials and make them react
However, most often plants do not have unlimited supplies of their raw materials so
their rate of photosynthesis is limited by whatever factor is the lowest at that time
So a limiting factor can be defined as something present in the environment in
such short supply that it restricts life processes
There are three main factors which limit the rate of photosynthesis:
o Temperature
o Light intensity
o Carbon dioxide concentration
Temperature
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The effect of temperature on the rate of photosynthesis
Light intensity
The more light a plant receives, the faster the rate of photosynthesis
This trend will continue until some other factor required for photosynthesis prevents
the rate from increasing further because it is now in short supply
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The effect of light intensity on the rate of photosynthesis
At low light intensities, increasing the intensity will initially increase the rate of
photosynthesis. At a certain point, increasing the light intensity stops increasing the
rate. The rate becomes constant regardless of how much light intensity increases as
something else is limiting the rate
The factors which could be limiting the rate when the line on the graph is horizontal
include temperature not being high enough or not enough carbon dioxide.
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The effect of carbon dioxide concentration on the rate of photosynthesis
The factors which could be limiting the rate when the line on the graph is horizontal
include temperature not being high enough or not enough light
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Leaf Structure & Adaptations for Photosynthesis
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Diagram showing the cross-section of a leaf
atmosphere → air spaces around spongy mesophyll tissue → leaf mesophyll cells →
chloroplast
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Adaptations of Leaf Structure for Photosynthesis Table
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6.1.11 Identifying Leaf Structures in a Dicotyledonous Plant
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Dia
gram showing the cross-section of a leaf
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An electron micrograph of a leaf.
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7. Human Nutrition
7.1.1 Diet & Deficiencies
Balanced Diet
A balanced diet consists of all of the food groups in the correct proportions
The necessary food groups are:
o Carbohydrates
o Proteins
o Lipids
o Vitamins
o Minerals
o Dietary Fibre
o Water
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Vitamin and Mineral Requirements Table
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Varying Dietary Needs of Individuals Table
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Rickets
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Organs of the Digestive System: Function
Stages of food breakdown
Food taken into the body goes through 5 different stages during its passage through
the alimentary canal (the gut):
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o Ingestion - the taking of substances, e.g. food and drink, into the body
through the mouth
o Mechanical digestion - the breakdown of food into smaller pieces without
chemical change to the food molecules
o Chemical digestion - the breakdown of large, insoluble molecules into small,
soluble molecules
o Absorption - the movement of small food molecules and ions through the
wall of the intestine into the blood
o Assimilation - the movement of digested food molecules into the cells of the
body where they are used, becoming part of the cells
o Egestion - the passing out of food that has not been digested or absorbed,
as faeces, through the anus
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7.1.3 Physical Digestion
Physical Digestion
Types of teeth
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Structure of a
typical tooth
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19.1.1 Transfer of Energy
Transfer of Energy
Transfer of Energy
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A food chain shows the transfer of energy from one organism to the next, starting
with a producer
The source of all energy in a food chain is light energy from the Sun
The arrows in a food chain show the transfer of energy from one trophic level to the
next
Energy is transferred from one organism to another by ingestion (eating)
In the food chain above:
Food Webs
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A food web shows the interdependence of organisms
Food webs give us a lot more information about the transfer of energy in an
ecosystem
They also show interdependence - how the change in one population can affect
others within the food web
For example, in the food web above, if the population of earthworms decreased:
o The population of grass plants would increase as there are now fewer
species feeding off them
o The populations of frogs and mice would decrease significantly as
earthworms are their only food source
o The population of sparrows would decrease slightly as they eat
earthworms but also have another food source to rely on (caterpillars)
Most of the changes in populations of animals and plants happen as a result
of human impact - either by overharvesting of food species or by
the introduction of foreign species to a habitat
Due to interdependence, these can have long-lasting knock-on effects to
organisms throughout a food chain or web
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19.1.3 Pyramids of Number & Biomass
Pyramids of Number
A pyramid of numbers shows how many organisms we are talking about at each
level of a food chain.
The width of the box indicates the number of organisms at that trophic level
For example, consider the following food chain:
A pyramid of numbers
Despite the name (and the example above), a pyramid of numbers doesn’t always
have to be pyramid-shaped, for example:
This is because the size of the organism is also important - one large organism,
like the oak tree in the pyramid above, contains enough energy to support many
smaller organisms (the insects)
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Rules to remember when drawing a pyramid of numbers:
You cannot change the trophic level of the organisms - they must stay in the
same order as in the food chain with producers on the bottom, followed by primary
consumers, then secondary consumers, then tertiary consumers
Generally, the larger an individual organism is, the less of them there are
Pyramids of Biomass
A pyramid of biomass shows how much mass the creatures at each level would
have without including all the water that is in the organisms (their ‘dry mass’)
Pyramids of biomass are ALWAYS pyramid-shaped, regardless of what the
pyramid of numbers for that food chain looks like
This is because the mass of organisms has to decrease as you go up a food
chain – if we take our first food chain as an example, it’s impossible to have 10kg of
grass feeding 50kg of voles feeding 100kg of barn owls
A pyramid of biomass
Pyramids of biomass provide a much better idea of the quantity of the plant or
animal material at each level of a food chain and therefore are a better way of
representing interdependence within the food chain
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19.1.4 Pyramids of Energy: Extended
Pyramids of Energy: Extended
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Energy is lost at each trophic level for several reasons
Humans are omnivores, obtaining energy from both plants and animals, and this
gives us a choice of what we eat
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These choices, however, have an impact on what we grow and how we use
ecosystems
Think of the following food chains both involving humans:
wheat → human
Given what we know about energy transfer in food chains, it is clear that if
humans eat the wheat there is much more energy available to them than if they eat
the cows that eat the wheat
This is because energy is lost from the cows, so there is less available to pass on
to humans
Therefore, it is more energy efficient within a crop food chain for humans to be
the herbivores rather than the carnivores
In reality, we often feed animals on plants that we cannot eat (eg grass) or that are
too widely distributed for us to collect (eg algae in the ocean which form the food of
fish we eat)
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When fossil fuels are burned (the process is known as combustion), the carbon
combines with oxygen and carbon dioxide is released into the atmosphere
Increased use of fossil fuels is contributing to an increase in the carbon dioxide
content of the atmosphere
In addition, mass deforestation is reducing the amount of producers available to
take carbon dioxide out of the atmosphere by photosynthesis
This problem is exacerbated by the fact that in many areas of the world,
deforestation is taking place for land rather than for the trees themselves, and as
such they are burnt down, releasing yet more carbon dioxide into the
atmosphere
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The Carbon Cycle
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Farmers can help reduce the amount of these unhelpful bacteria by ploughing and
turning over soil
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19.1.6 Populations
Definition of Population
Population Growth
All living organisms compete with each other for food, water and living space
Those which are the best adapted to their environments generally increase their
populations at the expense of those less well adapted
Population growth in most organisms is controlled by the following three factors:
o Food supply
o Predation
o Disease
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A typical growth curve for a population in an enclosed environment
The shape of this curve ( a little like an ‘S’), gives it its name - a sigmoid growth
curve
The curve has four distinct phases:
o Lag phase - organisms are adapting to the environment before they are
able to reproduce; in addition, at this stage there are very few organisms and
so reproduction is not producing larger numbers of offspring
o Log phase (aka exponential phase) - food supply is abundant, birth rate
is rapid and death rate is low; growth is exponential and only limited by
the number of new individuals that can be produced
o Stationary phase - population levels out due to a factor in the
environment, such as a nutrient, becoming limited as it is not being
replenished; birth rate and death rate are equal and will remain so until either
the nutrient is replenished or becomes severely limited
o Death phase - population decreases as death rate is now greater than birth
rate; this is usually because food supply is short or metabolic wastes
produced by the population have built up to toxic levels
Organisms in a natural environment are unlikely to show population growth like a
sigmoid growth curve because they are affected by many other factors, including:
o changing temperature or light
o predators
o disease
o immigration (individuals moving into the area)
o emigration (individuals moving out of the area)
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20. Biotechnology & Genetic Engineering
20.1.1 Microorganisms & Biotech
Use of Bacteria
Biofuels
Yeast is a single celled fungus that uses sugar as its food source
When it respires, ethanol and carbon dioxide are produced (and energy is released)
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The alcohol produced by fermentation of glucose can be used as biofuel
The ethanol produced in this reaction is increasingly being used as a biofuel (a fuel
made from living organisms rather than a fossil fuel like oil, coal or gas)
In countries such as Brazil, biofuel is partly replacing petrol as the fuel for cars and
other vehicles
Plant material is used as the substrate for producing ethanol (as a source of
glucose) - it is chopped up into small pieces and mixed with yeast which respires
anaerobically and produces ethanol
The liquid is separated from the remaining solids and any water is removed, leaving
a concentrated solution of ethanol
Sometimes the waste parts of crop plants, such as the stalks or outer leaves, are
used, but in other places, crops are grown specifically to be harvested for making
ethanol
In some places, this is causing concern that there is less land available for local
people to grow food crops needed for survival
Bread Making
Yeast will respire anaerobically if it has access to plenty of sugar, even if oxygen is
available
This is taken advantage of in bread making, where the yeast is mixed with flour and
water and respires anaerobically, producing carbon dioxide:
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The carbon dioxide produced by fermentation (anaerobic respiration) of glucose is
what makes bread dough rise
The carbon dioxide produced by the yeast during respiration is caught in the dough,
causing the bread to rise
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Biological Washing Powders
Many stains on clothes are organic molecules – oil from skin, protein from blood,
fat and protein from food
Detergents that only contain soap can remove some of these stains when mixed with
hot water, but it can take a lot of time and effort and very high temperatures to
remove the stains entirely
Biological washing powders contain enzymes similar to the digestive enzymes
produced in the alimentary canal that help to break down large food molecules
Using biological washing powders has several advantages, including:
o Quickly breaking down large, insoluble molecules such as fats and
proteins into smaller, soluble ones that will dissolve in washing water
o They are effective at lower temperatures, meaning less energy (and
money) has to be used in order to wash clothes to get them clean as
washing water does not need to be heated to higher temperatures
o They can be used to clean delicate fabrics that would not be suitable for
washing at high temperatures
Lactose-Free Milk
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Lactose-free milk is a product made from adding the enzyme lactase to dairy milk to
break down the sugars in it
Penicillin Production
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The chemical was isolated and named penicillin
Since the discovery of penicillin, methods have been developed to produce it on a
large scale, using an industrial fermenter
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20.2.1 Genetic Engineering
Genetic Engineering Examples
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The gene for human insulin has been inserted into bacteria which then produce
human insulin which can be collected and purified for medical use for diabetics
Crop plants, such as wheat and maize, have been genetically modified to contain a
gene from a bacterium that produces a poison that kills insects, making
them resistant to insect pests such as caterpillars
Crop plants have also been genetically modified to make them resistant to certain
herbicides (chemicals that kill plants), meaning that when the herbicide is sprayed
on the crop it only kills weeds and does not affect the crop plant
Some crops have been genetically modified to produce additional vitamins,
eg ‘golden rice’ contains genes from another plant and a bacterium which make the
rice grains produce a chemical that is turned into vitamin A in the human body,
which could help prevent deficiency diseases in certain areas of the world
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Process of Genetic Engineering
The gene that is to be inserted is located in the original organism (for example, this
could be the gene for human insulin)
Restriction enzymes are used to isolate the required gene, leaving it with ‘sticky
ends’ (a short section of unpaired bases)
A bacterial plasmid is cut by the same restriction enzyme leaving it with
corresponding sticky ends (plasmids are circles of DNA found inside bacterial
cells)
Restriction enzymes cut DNA strands at specific sequences to form ‘sticky ends’
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The plasmid and the isolated gene are joined together by DNA ligase enzyme
If two pieces of DNA have matching sticky ends (because they have been cut by
the same restriction enzyme), DNA ligase will link them to form a single, unbroken
molecule of DNA
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o The presence of plasmids in bacteria, separate from the main bacterial
chromosome, makes them easy to remove and manipulate to insert genes
into them and then place back inside the bacterial cells
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21. Human Influences on Ecosystems
Improving Food Production
Modern technology has increased food supply substantially in the following ways:
o Agricultural machinery has replaced humans and improved efficiency due
to the ability to farm much larger areas of land
o Chemical fertilisers improve yields - fertilisers increase the amount of
nutrients in the soil for plants, meaning that they can grow larger and produce
more fruit
o Insecticides and herbicides - these chemicals kill off unwanted insects and
weed species, meaning that there is less damage done to plants and fruit
lost to insects (insecticides), as well as reducing competition from other
plant species (herbicides)
o Selective breeding - animals and crop plants which produce a large yield are
selectively bred to produce breeds that reliably produce high yields
Modern agricultural processes allows for cultivation of much larger areas of land for
crop plants
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Monocultures
Monoculture farming means that on a given area of agricultural land only one type
of crop is grown (eg trees for palm oil grown in Indonesian rainforest)
This large scale growth of a single variety of plant does not happen naturally in
ecosystems, where there are usually many different species of plants growing
which, in turn, support many species of animals (high biodiversity)
In monocultures, biodiversity is much lower
Another issue with monocultures is the increase in pest populations – if a
particular pest feeds on a crop, farming it in large areas repeatedly means there is
an ample supply of food for the pest, causing the population to increase
Often farmers will spray insecticides onto crops in order to control the pests. This
leads to:
o harmless insects being killed as well
o pollution by pesticides (which are often persistent chemicals which
accumulate in food chains)
o in many instances where they are used repeatedly for specific pests, the
pests may eventually become resistant to them, reducing their effectiveness
Palm oil production has increased rapidly over the last 30 years
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21.1.2 Livestock Farming
Intensive Livestock Farming
In developed countries, large numbers of livestock are often kept in an area that
would not normally be able to support more than a very small number
They are often fed high energy foods, regularly given medication such
as antibiotics as a preventative measure against disease and kept in artificially
warm temperatures and small spaces that do not allow for much movement
Ecological issues with intensive farming include:
o reduction in biodiversity in areas where large amounts of land are used to
graze cattle (as only grass is grown so in effect it becomes a monoculture)
o overgrazing can lead to soil erosion
o large numbers of cattle produce large amounts of methane, a greenhouse
gas
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Deforestation
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Consequences of Deforestation
Human activities have led to the pollution of land, water and air
Pollution comes from a variety of sources, including industry and manufacturing
processes, waste and discarded rubbish, chemicals from farming practices, nuclear
fall-out, and untreated sewage
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21.4.1 Types of Pollution
Plastic Pollution
Plastics have a large negative impact on both land and water habitats due to their
non-biodegradability
In marine habitats:
o Animals often try to eat plastic or become caught in it, leading to injuries
and death
o As the plastic breaks down it can release toxins that affect marine organisms
o Once it has broken down into very small particles, it is commonly ingested
by animals and enters the food chain
On land:
o Plastic is generally disposed of by burying in landfills
o As it breaks down, it releases toxins into the surrounding soil and as such
the land is no good for growing crops or grazing animals and can only be
used for building on several decades after burial
Female Hormones
Female contraceptive hormones are excreted from the body in urine and
then make their way into the water supply, as they are not filtered out by sewage
treatment plants
If they reach male aquatic organisms, such as fish and frogs, which are very
sensitive to the hormones, it causes feminisation
This is where male organisms begin to produce eggs and lose the ability to
reproduce
Consequently, a smaller amount of offspring is produced which can harm the
species survival and also disrupts food chains for animals that usually feed off
these organisms
In addition, these hormones can reduce the sperm count in human males, which
causes fertility problems
Eutrophication
Runoff of fertiliser from farmland enters the water and causes increased growth of
algae and water plants
The resulting ‘algal bloom’ blocks sunlight so water plants on the bottom start to
die, as does the algae when competition for nutrients becomes too intense
As water plants and algae die in greater numbers, decomposing bacteria increase
in number and use up the dissolved oxygen whilst respiring aerobically
As a result there is less oxygen dissolved in water, so aquatic organisms such as
fish and insects may be unable to survive
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Sequence of events causing eutrophication in lakes and rivers
Acid Rain
Combustion of fossil fuels that contain sulfur impurities creates sulfur dioxide
This is released into the atmosphere where it combines with oxygen to form sulfur
trioxide
Sulfur trioxide dissolves in water droplets in clouds and forms acid rain
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21.4.2 Climate Change
Climate Change
A greenhouse gas is a gas that absorbs infrared radiation from the Sun so it
remains trapped in the Earth’s atmosphere
This is important to ensure Earth is warm enough for life, however if levels of these
gases in the atmosphere increase it leads to an increase in the greenhouse effect
which causes the Earth’s average temperature to rise
There are many greenhouse gases, the most important are:
o Water vapour
o Carbon dioxide
o Methane
o Nitrous oxides
o CFCs
The greenhouse effect works in the following way:
o The Sun emits rays that enters the Earth’s atmosphere
o The heat bounces back from the Earth’s surface
o Some heat is reflected back out into space
o Some heat is absorbed by greenhouse gases and is trapped within the
Earth’s atmosphere - this is normal
o However, as the levels of greenhouse gases in the atmosphere rise due to
human activities the Earth’s average temperature rises beyond
normal (an enhanced greenhouse effect), causing global
warming or climate change
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How the greenhouse effect works
Ocean temperatures increase which causes melting of polar ice caps / rising sea
levels / flooding / coral bleaching
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Increasing temperatures can cause extreme weather like super storms, flooding,
droughts
These extreme weather events can lead to changes in or loss of habitats
This means that there will be a decrease in biodiversity as food chains are
disrupted and extinction rates increase
There could also be increases in migration of species to new places,
increased spread of pests and disease
21.5.1 Sustainability
Sustainable Resources
We use many resources from the Earth; some, such as food, water and wood,
are sustainable resources
A sustainable resource is one which is produced as rapidly as it is removed from
the environment so that it does not run out
Some resources, such as fossil fuels (coal, oil and natural gas), are non-
renewable because what we use cannot be replaced
These resources, once used, cannot be produced anymore and so they need to
be conserved by reducing the amount we use and finding other, sustainable
resources to replace them
Fossil fuels are being used as an energy source in increasing amounts
In addition, they are the raw materials for many other products we make - eg almost
all plastics that are made start with oil as a raw material
Some products, especially those made from paper, plastic, glass or metal, can
be reused and recycled - this reduces waste in the environment and reduces the
amounts of raw materials and energy needed to make new products
Some resources, such as forests and fish stocks, can be maintained - enabling us
to harvest them sustainably so that they will not run out in the future
Sustainable Development
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When developing the way in which we use resources to manage them sustainably,
we have to balance conflicting demands - eg:
o the need for local people to be able to utilise the resources they have in their
immediate environment with the needs of large companies to make money
from resources such as forests and fish
o the need for balancing the needs of humans for resources with the needs
of the animals and plants that live in the areas the resources are taken from
(preventing loss of habitat and extinction)
o the need to balance what current populations need with what future
populations might need - for example if we harvest all the fish we need to
feed people now, this might lead to overfishing which would deplete stocks for
future generations
For development to occur sustainably, people need to cooperate at local, national
and international levels in the planning and management of resources
Sustaining Forests
Forests are needed to produce paper products and provide wood for timber
Much of the world’s paper is now produced from forests which replant similar trees
when mature trees are cut, ensuring that there will be adequate supply in the future
Tropical hardwoods such as teak and mahogany take many years to regrow but are
highly desirable for furniture
Using these types of wood has now been made more sustainable due to
the introduction of several schemes designed to monitor logging
companies and track the wood produced (eg the Forestry Stewardship Council)
Education helps to ensure logging companies are aware of sustainable practices
and consumers are aware of the importance of buying products made from
sustainable sources
More efforts are being made to manage forests sustainably so consumers know they
are not causing damage to forests
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Sustaining Fish Stocks
21.5.2 Sewage
Sewage Treatment
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Water containing sewage goes through several stages of treatment before being
returned to natural water systems
Endangered Species
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There are moral, cultural and scientific reasons for conservation programmes,
including:
o reducing extinction rates of both plant and animal species
o keeping damage to food chains and food webs to a minimum and protecting
vulnerable ecosystems (eg the rainforests)
o protecting our future food supply and maintaining nutrient cycles and
possible sources of future medical drugs and fuels
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