Protein Gel Electrophoresis
Protein Gel Electrophoresis
Protein Gel Electrophoresis
Comprehensive solutions
designed to drive your success
Protein gel electrophoresis is a simple way to
separate proteins prior to downstream detection
or analysis, and is a critical step in most
workflows that isolate, identify, and characterize
proteins. We offer a complete array of products
to support rapid, reliable protein electrophoresis
for a variety of applications, whether it is the
first or last step in your workflow. Our portfolio
of high-quality protein electrophoresis products
unites gels, stains, molecular weight markers,
running buffers, and blotting products for
your experiments.
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Prepare samples Choose the electrophoresis
Select precast gel and select buffers Select the standard chamber system and power supply Run the gel Stain the gel Post stain 3
Contents
Electrophoresis overview 4
Post stain
Transfer and detection 74
Appendix
Protocol quick reference 76
Ordering information 81
Electrophoresis
Electrophoresis is defined as the Support matrix
transport of charged molecules Two types of support matrices are commonly used in
electrophoresis—polyacrylamide and agarose. The support
through a solvent by an electric matrices act as porous media and behave like a molecular sieve.
Separation of molecules is dependent upon the gel pore size of
field. Electrophoresis is a simple, the support matrix used. Agarose has a large pore size and is ideal
for separating macromolecules such as nucleic acids and protein
rapid, and sensitive analytical complexes. Polyacrylamide has a smaller pore size and is ideal for
separating most proteins and smaller nucleic acids.
tool for separating proteins and
Polyacrylamide gel electrophoresis
nucleic acids. Any charged ion or
(PAGE)
molecule will migrate when placed Polyacrylamide gels are generated by the polymerization of
in an electric field. Most biological acrylamide monomers. These monomers are crosslinked into
long chains by the addition of bifunctional compounds such as
molecules carry a net charge at any N,N,-methylenebisacrylamide (bis), which react with the free
functional groups of the chain termini. The concentration of
pH other than at their isoelectric acrylamide and bisacrylamide determines the pore size of the gel.
The higher the acrylamide concentration, the smaller the pore size,
point and will migrate at a rate resulting in resolution of lower molecular weight molecules and
vice versa.
proportional to their charge density. PAGE allows one to separate proteins for different applications
based on:
The mobility of a biological molecule • The acrylamide matrix
through an electric field will depend • Buffer systems
• Field strength
• Net charge on the molecule
• Size and shape of the molecule
• Ionic strength
• Properties of the matrix through which
the molecules migrate (e.g., viscosity,
pore size) Mini Gel Tank
Prepare samples Choose the electrophoresis
Select precast gel and select buffers Select the standard chamber system and power supply Run the gel Stain the gel Post stain 5
Buffer systems
Electrophoresis is performed using continuous or discontinuous
buffer systems. A continuous buffer system utilizes only one
buffer in the gel and running buffer. A discontinuous buffer system
utilizes a different gel buffer and running buffer1. This system may
also use two gel layers of different pore sizes and different buffer
composition (the stacking and separating gel). Electrophoresis
using a discontinuous buffer system results in concentration of the
sample and higher resolution.
Did you know?
Arne Tiselius won the
Nobel Prize in Chemistry
Reference for electrophoretic analysis
1. Ornstein L (1964) Disc electrophoresis. 1. Background and theory. Ann N Y Acad Sci 121:321-349. of serum proteins in 1948.
In the case of the Bis-Tris system (Figure 2), three ions are
primarily involved:
• Chloride (–) supplied by the gel buffer, serves as the fast-moving Figure 3. The Tris-acetate gel system.
TRICINE
leading ion. (Trailing Ion) • Gel buffer ions are Tris and acetate
PROTEIN/SDS COMPLEX (pH 7.0)
• MES or MOPS (–) (depending on the running buffer choice) (Stacked Proteins)
• Running buffer Ions are Tris, tricine,
serves as the trailing ion. ACETATE and SDS (pH 8.3)
(Leading Ion)
∙ MES: 2-(N-morpholino) ethane sulfonic acid • Gel operating pH is 8.1
PROGRESSION OF RUN
∙ MOPS: 3-(N-morpholino) propane sulfonic acid Common Ion is Tris,
present in the gel and running buffer
• Bis-Tris (+) acts as the common ion present in the gel while
Tris (+) is provided by the running buffer.
Precast gels
Popular gel chemistries Specialty gels
Learn more at
thermofisher.com/gelcastingaccessories
Gel selection guide Find the right gel for your research needs based on molecular weight,
downstream applications, and throughput requirements.
Denaturing separation
Molecular weight
Low molecular weight proteins High molecular weight proteins Broad-range molecular
and peptides (>2.5 kDa) (<500 kDa) weight separation
Novex NuPAGE
Tricine gels Tris-Acetate gels
E-PAGE 48-well
Application or 96-well gels
Novex
Tris-Glycine gels
Native separation
Find the right mini gel using our interactive gel selection tool
at thermofisher.com/minigelselection
Tris-glycine chemistry
of up to 2x more sample volume than other precast • Separation range: 0.3–260 kDa
gels. Bolt gels are ideal for western blot transfer • Polyacrylamide concentrations: fixed 8%, 10%, and 12%;
and analysis along with any other technique where gradient 4–12%
protein integrity is crucial.
• Gel dimensions: 8 x 8 cm (1 mm thick)
Bolt Bis-Tris Plus gels offer: • Maximum sample volume per 12-well gel: ~40 μL, or two-thirds
of the sample well volume
• High sample volume capacity—wedge well design
allows detection of proteins in very dilute samples or ts acquired w
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measurement of low-abundance proteins
• Preserved protein integrity—neutral-pH formulation
minimizes protein modifications
th e k
Mini Gel Tan
For ordering information refer to page 81. For quick reference on the protocol please refer to page 76.
Protein gel electrophoresis technical handbook 11
Recommended products
The Invitrogen™ Bolt™ Welcome Pack + iBlot™ 2 System offers a Thermo Scientific Pierce Power
complete protein separation and western blot solution by combining our Stainer is recommended for fast
Mini Gel Tank, Invitrogen™ Bolt™ gels and buffers, SeeBlue Plus2 Prestained Coomassie dye staining of
Standard, and Invitrogen™ iBlot™ 2 Gel Transfer Device with transfer stacks. Bolt Bis-Tris Plus Gels.
NuPAGE gels
Revolutionary high-performance gels
referenced in >20,000 publications
• More efficient western blot transfer—neutral pH prevents • Maximum sample volume per 10-well mini gel: 25 μL
reoxidation of reduced samples during protein transfer (1 mm thick); 37 μL (1.5 mm thick)
For ordering information refer to page 81. For quick reference on the protocol please refer to page 76-77.
Protein gel electrophoresis technical handbook 13
NuPAGE gels
Figure 9. Migration patterns achieved in NuPAGE gels. For optimal gels. (B) Migration patterns of HiMark Unstained Protein Standard on
results, protein bands should migrate within the gray shaded areas. NuPAGE Tris-Acetate gels. (C) Migration pattern for Tris-acetate gel native
(A) Migration patterns of Invitrogen™ Novex™ Sharp Prestained Protein separation is for the Invitrogen™ NativeMark™ Unstained Protein Standard.
Standard or Novex Sharp Unstained Protein Standard on NuPAGE Bis-Tris
Recommended products
Invitrogen™ HiMark™ Unstained and Prestained Protein Standards are PageRuler, PageRuler Plus, and Spectra Prestained Protein Ladders
specifically designed for large protein analysis on NuPAGE Tris-Acetate are recommended for use with NuPAGE Bis-Tris gels for easy molecular
gels under denaturing conditions. Both standards offer a ready-to-load weight determination.
format and consist of 9 proteins with a size range of 40–500 kDa.
Visualize with Coomassie stain, silver stain, or fluorescent protein
stains after electrophoresis (see “Stain the gel”, page 62).
separation of a wide range of proteins into well- • Separation range: 6–500 kDa
resolved bands (Figure 10). A gel migration chart is • Polyacrylamide concentrations:
shown in Figure 11. – Fixed concentrations available from 4% to 18%
– Gradient gels with ranges of 4–12%, 4–20%, 8–16%,
Novex Tris-Glycine gels are: and 10–20%
• Individually packaged for convenience • Gel dimensions:
– Mini: 8 x 8 cm (1 or 1.5 mm thick)
• Compatible with most protein standards for accurate size
– Midi: 8 x 13 cm (1 mm thick)
determination
• Maximum sample volume per well: 25 μL (1 mm thick);
• Flexible for use with native or denatured protein samples,
37 μL (1.5 mm thick)
with specially formulated buffers for each condition
ts acquired w
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th e k
Mini Gel Tan
For ordering information refer to page 82–83. For quick reference on the protocol please refer to page 77-78.
Protein gel electrophoresis technical handbook 15
260kDa
260 kDa
500 kDa
10%
Figure 11. Migration patterns of protein molecular weight standards in Novex Tris-glycine gels. For optimal results, protein bands should
migrate within the gray shaded areas. (A) *Migration patterns of HiMark™ Unstained Protein Standard. † Migration patterns of Novex Sharp Pre-
Stained Protein Standard or Novex Sharp Unstained Protein Standard. (B) † † Migration pattern of NativeMARK Unstained Protein Standard.
Recommended products
For sample cleanup prior to electrophoresis, we recommend using the Buffers for native proteins: Invitrogen™ Novex™ Tris-Glycine Native
Pierce SDS-PAGE Sample Prep Kit. Sample Buffer and Novex™ Tris-Glycine Native Running Buffer.
Buffers for denatured proteins: Invitrogen™ Novex™ Tris-Glycine SDS PageRuler, PageRuler Plus, and Spectra protein ladders
Sample Buffer and Novex™ Tris-Glycine SDS Running Buffer. are recommended for molecular weight determination with
Novex Tris-Glycine gels.
NativePAGE gels
Superior resolution of native proteins and
protein complexes
• Superior performance—higher resolution than Tris-glycine and 5: 10, 5, and 2.5 μg spinach
native electrophoresis chloroplast extract; Lanes 7, 8
and 9: 10, 5, and 2.5 μg bovine
th e
Mini Gel Tan
k mitochondrial extract.
Advantages of the NativePAGE gel system over
the Tris-glycine gel system include:
• Reduced vertical streaking—Coomassie G-250 dye binds
to nonionic detergent molecules in the sample and carries
them in the dye front, ahead of resolving proteins
For ordering information refer to page 84. For quick reference on the protocol please refer to page 78.
Protein gel electrophoresis technical handbook 17
NativePAGE gel
Recommended products
NativeMark Unstained Protein Standard is recommended for use
with native gel chemistries, including our Tris-glycine, Tris-acetate, and
NativePAGE gel systems. This standard offers a wide molecular weight
range of 20–1,200 kDa, and the 242 kDa β-phycoerythrin band is visible as
a red band after electrophoresis for reference (prior to staining). See page
40 for details.
applications after transferring to PVDF membranes
For ordering information refer to page 85. For quick reference on the protocol please refer to page 79.
Protein gel electrophoresis technical handbook 19
Recommended products
Use Novex Tricine gels with our In-Gel Tryptic Digestion Kit for separation
and digestion of peptides for mass spectrometry.
1 2 3 4 5 6 7 8 9 10
buffers, solubilizers, and molecular weight pl
For ordering information refer to page 85. For quick reference on the protocol please refer to page 79.
Protein gel electrophoresis technical handbook 21
Separated on
precast vertical
gel (slab)
Cathode –
Anode +
Recommended products
Novex IEF buffer kits—includes optimized cathode, anode, and sample ZOOM™ IEF Fractionator Combo Kit—
buffers to reduce variability and enable consistent results. offers a fast, reliable method to reduce
sample complexity, enrich low-abundance
IEF Marker 3–10—ready to use, enables accurate results. proteins, and increase the dynamic range
of detection.
Novex
Novex Novex
Zymogram
Easy in-gel protease analysis Zymogram Zymogram
blue casein
gelatin gel casein gel
gel
Invitrogen™ Novex™ Zymogram gels are excellent
Gel 10% Tris- 12% Tris- 4–16% Tris-
tools for detecting and characterizing proteases composition Glycine gel Glycine gel Glycine gel
that utilize casein or gelatin as a substrate.
Casein and gelatin are the most commonly Substrate 0.1% gelatin 0.05% casein 0.1% casein,
used substrates for demonstrating the activity with blue stain
incorporated
of proteases. Novex Zymogram gels are used
in gel
to analyze a variety of enzymes, including matrix
metalloproteinases, lipases, and other proteases
(Figure 18). Available gel types are shown in Table 1. Sensitivity 10–6 units of 7 x 10 –4 units 1.5 x 10 –3 units
collagenase of trypsin of trypsin
Good to know
Protease samples are denatured in SDS buffer under nonre- Separation 20–120 kDa 30–150 kDa 10–220 kDa
ducing conditions and without heating, and run on a Novex range
Zymogram gel using Novex Tris-Glycine SDS Running Buffer.
After electrophoresis, the enzyme is renatured by incubating
the gel in Invitrogen™ Novex™ Zymogram™ Renaturing Buffer Specifications
that contains a nonionic detergent. The gels are then equili- • Shelf life: 2 months
brated in Invitrogen™ Novex™ Zymogram™ Developing Buffer
• Average run time: 90 minutes
to add divalent metal cations required for enzymatic activity,
and then stained and destained. Regions of protease activity • Separation range: 10–220 kDa (Figure 19)
appear as clear bands against a dark blue background where • Polyacrylamide concentrations: fixed 10% (with gelatin), fixed
the protease has digested the substrate. 12% (with casein); gradient 4–16% (with blue casein)
ts acquired w
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For ordering information refer to page 85. For quick reference on the protocol please refer to page 80.
Protein gel electrophoresis technical handbook 23
Protease analysis
4—16% gel
10% gel 12% gel
(w/prestained
(w/gelatin) (w/casein)
casein blue)
10
20
30
40
% of length of gel
50
4
90
4
100
Recommended products
After electrophoresis, incubate the gel in Zymogram Renaturing
Buffer to renature the enzyme. The gels are then equilibrated in
Zymogram Developing Buffer to add divalent metal cations required
for enzymatic activity.
E-PAGE High-Throughput
Precast Gel System
Protein separation and analysis for
increased sample throughput
commercial barcode readers. These gels can be • Average run time: 14 minutes
loaded by multichannel pipettor or automated • Separation range: 10–200 kDa
loading system. The E-PAGE system also includes
E-Base™ integrated devices to run the gels, an • Polyacrylamide concentrations:
– E-PAGE™ 48 gel: fixed 8%
E-Holder™ platform for optional robotic loading, and
– E-PAGE™ 96 gel: fixed 6%
free E-Editor™ 2.0 Software to align images for easy
comparison. • Gel dimensions: 13.5 x 10.8 cm (3.7 mm thick)
Good to know C
E-PAGE gels run in the Invitrogen™ E-Base electrophoresis de- Daughter E-Base
E-PAGE gel
E-PAGE E-PAGE
48 8% Gel 96 6% Gel
0% 0%
220 kDa
10%
25%
120 kDa
220 kDa
Did you know?
20% Our E-Base devices are
60 kDa
120 kDa 50% compatible with the Society for
40 kDa
30%
100 kDa Biomolecules Screening (SBS)
standard plate size and can be
80 kDa conveniently mounted on liquid
75%
40% 20 kDa Figure 21. E-PAGE gel migration chart.
handling robot decks.
Migration patterns of the Invitrogen™ E-PAGE™
60 kDa
MagicMark™ Unstained Protein Standard
50 kDa
50% 100% are shown.
40 kDa
60%
30 kDa
70%
20 kDa
80%
90%
100%
Recommended products
The E-PAGE™ SeeBlue™ Prestained Protein Standard or E-PAGE
MagicMark Unstained Protein Standard are specifically designed for use
with E-PAGE gels.
onto a gel for analysis, it must resuspend samples in lower-salt buffer prior to electrophoresis.
guidelines for preparing samples • Genomic DNA in the cell lysate may cause the sample to
become viscous and affect protein migration patterns and
are provided below. resolution. Shear genomic DNA to reduce viscosity before
loading the sample.
Pierce SDS-PAGE M S
Untreated
M S
Sample treated with the Pierce
SDS-PAGE Sample Prep Kit
M S M S
80 88% protein
analysis (Figure 22) 85%
75% 77% 77% recovery is
74%
• Compatible with the Thermo Scientific™ Pierce™ BCA 60 achieved
Assay—allows quantification of the processed sample using the
40 Pierce SDS-
• Enriches dilute protein solutions—concentrates protein PAGE Sample
20 Prep Kit.
sample by eight-fold in less than 20 minutes for SDS-PAGE
Pure proteins
analysis (Figure 22) (60 μg) of
0
Carbonic Ovalbumin Transferrin Ubiquitin Cytochrome c Bacterial assorted
• Fast and easy to use for up to 70 μg of protein per anhydrase lysat e molecular mass
sample—uses new spin cup format that allows higher (30, 44, 80, 86, and 120 kDa) as well as a bacterial lysate were processed
amounts of protein to be processed than with the original using this kit. Protein concentrations were determined with the Pierce BCA
procedure Protein Assay Kit and reported as percent protein recovered.
unbound contaminating chemicals. Finally, elute the sample 6 M Urea:DMSO (1:3 ratio) 75%
1 M Sodium chloride 75%
in 50 μL of the Elution Buffer. The recovered protein sample is
6 M Urea 74%
ready to mix with the supplied Sample Loading Buffer for
10% CHAPS 80%
gel loading. 25% Glycerol 71%
10% OTG 71%
Select buffers
Buffers and reagents
Protein samples prepared for If suitable, negatively charged,
PAGE analysis are denatured low molecular weight dye is also
by heating in the presence of included in the sample buffer;
a sample buffer with or without it will migrate at the buffer front,
a reducing agent. The protein enabling one to monitor the
sample is mixed with the sample progress of electrophoresis.
buffer and heated for 2–10 The most common tracking dye
minutes, then cooled to room for sample loading buffers is
temperature before it is applied bromophenol blue.
to the sample well on the gel.
We offer premixed, reliable
Loading buffers also contain
SDS-PAGE buffers and reagents
glycerol so that they are heavier
including sample buffers,
than water and sink neatly to the
running buffers, reducing agents,
bottom of the buffer-submerged
and antioxidants.
well when added to a gel.
Learn more at
thermofisher.com/electrophoresisbuffers
Novex IEF Gel • Novex™ IEF Sample Buffer, • Novex™ IEF Anode Buffer
pH 3–10 (2X) (50X)
• Novex™ IEF Sample Buffer, • Novex™ IEF Cathode Buffer,
pH 3–7 (2X) pH 3–10 (10X)
• Novex™ IEF Cathode Buffer,
pH 3–7 (10X)
*Novex Zymogram Developing Buffer (10X) and Novex Zymogram Renaturing Buffer (10X) are available for
visualizing the Novex Zymogram gels.
Buffer recipes
NuPAGE buffer recipes
Buffer Storage Component Concentration (1X)
NuPAGE LDS Sample Buffer +4˚–25˚C
Glycerol 0%
Tris base 141 mM
Tris HCl 106 mM
LDS 2%
EDTA 0.51 mM
SERVA™ Blue G-250 0.22 mM
Phenol Red 0.175 mM
(pH 8.5)
* The pre-mixed buffers (Cat. Nos. NP0001 and NP0002) also contain trace amounts of the proprietary NuPAGE Antioxidant (Cat. No. NP0005) for
stability. Additional Antioxidant may be required with specific protocols.
* Tris HCl solutions are prepared from Tris base and pH adjusted with 6 N HCl.
Buffer recipes
Tricine buffer recipes
Buffer Storage Component Concentration (1X)
Tricine SDS Sample Buffer +4˚C
Tris HCl* 450 mM
Glycerol 12%
SDS 4%
Coomassie Blue G 0.0075%
Phenol Red 0.0025%
Deionized water –
(pH 8.45)
* Tris HCl solutions are prepared from Tris base and pH adjusted with 6 N HCl.
Zymogram Room
Developing Buffer temperature Tris HCI* 50 mM
NaCl 200 mM
CaCl2•2 H2O 5 mM
Brij™ 35 0.006% (w/v)
Deionized water _
(pH 7.6)
* Tris HCl solutions are prepared from Tris base and pH adjusted with 6 N HCl.
Glycerol 15%
Deionized water —
Urea-Thiourea-CHAPS –20˚C
(rehydration buffer for IPG strips) Deionized urea 7M
Deionized thiourea 2M
CHAPS 2–4%
Ampholytes* 0.2–2.0%
Bromophenol Blue 0.002%
Ultrapure water —
DTT 20 mM
* For ZOOM™ Strip pH 9-12 use 1% ZOOM™ Focusing Buffer pH 7-12 instead of ampholytes.
Broad range PageRuler Unstained Protein Ladder We offer a broad range of prestained and unstained protein
High range NativeMark Unstained Protein Standard ladders supplied in a ready-to-use format to facilitate easy protein
analysis during gel electrophoresis and western blotting (Table 3).
Recommended for:
• Precise determination of target protein molecular weight All of our protein ladders offer:
Broad range PageRuler Plus Prestained Protein Ladder • Reliability—exceptional lot-to-lot consistency
Spectra™ Multicolor Broad Range Protein Ladder and reproducibility
High range HiMark Prestained Protein Standard
Spectra Multicolor High Range Protein Ladder
Recommended for: Learn more at
• Approximate determination of molecular weight thermofisher.com/proteinstandards
• Monitoring the progress of electrophoresis runs
• Estimating the efficiency of protein transfer to the membrane during
western blotting
Other
Western MagicMark XP Western Protein Standard
PageRuler Plus Prestained 10–250 kDa 9 Green 10 kDa; orange Good Good
Protein Ladder 25 and 70 kDa
Spectra Multicolor Broad Range 10–260 kDa 10 Green 10 and 50 kDa; Good Best
Protein Ladder orange 40, 70, and
260 kDa; pink 140 kDa
Spectra Multicolor High Range 40–300 kDa 8 Green 50 kDa; orange Good Best
Protein Ladder 70 and 300 kDa
Near infrared (NIR) PageRuler Prestained NIR 11–250 kDa 10 55 kDa Good NA
standard Protein Ladder
Learn more at
thermofisher.com/proteinstandards
NA Best NA Good
NA Good NA Good
NA Best NA Good
Good NA Good NA
Best NA Best NA
Best NA Best NA
NA Good NA NA
NA Good NA Best
NA NA NA NA
NA NA NA Good
PageRuler Unstained
Protein Ladder
Sharp bands and precise molecular
weight estimation for a wide
range of proteins PageRuler Unstained Protein Ladder
NuPAGE 4–12% Bis-Tris Gel with MES SDS buffer
Learn more at
thermofisher.com/unstainedstandards
Protein Standard
1,048
1,236
1,048 720
480
Recommended products
The NativeMark Unstained Protein Standard is recommended for use
with NativePAGE Bis-Tris gels, Novex Tris-Glycine gels, or NuPAGE
Tris-Acetate gels.
Learn more at
thermofisher.com/unstainedstandards
Prestained ladders
PageRuler Prestained
Protein Ladder
Outstanding clarity for easy molecular
weight determination of low molecular
weight proteins PageRuler Prestained Protein Ladder
NuPAGE 4–12% Bis-Tris Gel with MES SDS buffer
171
weight proteins
71
Recommended products
The HiMark Prestained Protein Standard is recommended for use with
NuPAGE Tris-Acetate gels under denaturing conditions. This standard
can also be used with NuPAGE 4–12% Bis-Tris gels with Invitrogen™
NuPAGE MOPS SDS Running Buffer and Novex 4% Tris-Glycine gels.
However, to obtain the best results with high molecular weight proteins,
always use NuPAGE Tris-Acetate gels.
Learn more at
thermofisher.com/prestainedstandards
Learn more at
thermofisher.com/prestainedstandards
Learn more at
thermofisher.com/prestainedstandards
220
80
50
Learn more at
thermofisher.com/westernblotstandard
Learn more at
thermofisher.com/specialtystandards
BenchMark Fluorescent
Protein Standard
Efficient estimation of molecular weight by
fluorescent detection BenchMark Fluorescent Protein Standard
NuPAGE 4–12% Bis-Tris Gel with MES SDS buffer
Recommended products
The BenchMark Fluorescent Protein Standard is recommended for use
with NuPAGE gels or Novex Tris-Glycine gels.
Learn more at
thermofisher.com/specialtystandards
BenchMark His-tagged
Protein Standard
Convenient detection and protein sizing
of His-tagged proteins
BenchMark His-tagged Protein Standard
NuPAGE 4–12% Bis-Tris Gel with MES
™ ™
The Invitrogen BenchMark His-tagged Protein SDS buffer
Standard can be used as a positive control and for
molecular weight sizing in His-tagged fusion protein SimplyBlue InVision
stain stain
detection. Each protein in the standard has a 6xHis
tag. Storage specifications
• Storage buffer: Tris-HCl, SDS, glycerol, DTT, and Coomassie
• Comprehensive—10 sharp and clear bands from 10 to 160
Blue G-250
kDa for molecular weight estimation of His-tagged proteins
• Storage conditions: upon receipt store at –20°C
• Versatile—can be visualized with Invitrogen™ InVision™ His-
Tag In-Gel Stain or Coomassie R-250 stain on SDS-PAGE • Stability: 6 months from date of receipt
gels, or with Anti-His (C-term) Antibody using chromogenic
or chemiluminescent detection systems Recommended products
The BenchMark His-tagged Protein Standard is recommended for use with
Learn more at NuPAGE gels and Novex Tris-Glycine gels.
thermofisher.com/specialtystandards
Learn more at
thermofisher.com/iefstandards Recommended products
The IEF Marker 3-10 is applicable to all IEF gels (vertical or horizontal).
Electrophoresis chambers
and power supplies
Electrophoresis run considerations:
Resistance Current
The electrical resistance of the assembled electrophoresis cell For a given gel/buffer system, at a given temperature, current
is dependent on buffer conductivity, gel thickness, temperature, varies in proportion to the field strength (voltage) and cross-
and the number of gels being run. Although the resistance is sectional area (thickness and number of gels). When using a
determined by the gel system, the resistance varies over the constant current setting, migration starts slow, and accelerates
course of the run. over time, thus favoring stacking in discontinuous gels.
• In discontinuous buffer systems (and to a lesser extent in When running under constant current, set a voltage limit on the
continuous buffer systems) resistance increases over the course power supply at, or slightly above the maximum expected voltage
of electrophoresis. This occurs in the Tris-glycine buffer system to avoid unsafe conditions. At constant current voltage increases
as highly conductive chloride ions in the gel are replaced by less as resistance increases. If a local fault condition occurs (e.g., a
conductive glycine ions from the running buffer. bad connection), high local resistance may cause the voltage to
reach the maximum for the power supply, leading to overheating
• Resistance decreases as the temperature increases.
and damage of the electrophoresis cell.
Voltage Power
The velocity of an ion in an electric field varies in proportion to the
Wattage measures the rate of energy conversion, which is
field strength (volts per unit distance). The higher the voltage, the
manifested as heat generated by the system. Using constant
faster an ion moves. For most applications, we recommend a
power ensures that the total amount of heat generated by the
constant voltage setting.
system remains constant throughout the run, but results in variable
• A constant voltage setting allows the current and power to mobility since voltage increases and current decreases over the
decrease over the course of electrophoresis, providing a safety course of the run. Constant power is typically used when using
margin in case of a break in the system. IEF strips. When using constant power, set the voltage limit slightly
above the maximum expected for the run. High local resistance
• The constant voltage setting does not need adjustment to can cause a large amount of heat to be generated over a small
account for differences in number or thickness of gels being distance, damaging the electrophoresis cell and gels.
electrophoresed.
Learn more at
thermofisher.com/electrophoresischambers
1. Snap the electrophoresis tank into the base, and 2. Remove the comb, and peel away the tape at the 3. Place the cassette in the chamber with the wells
place the cassette clamp(s) into the chamber(s) bottom of the gel cassette. facing towards you.
with the anode connector(s) (+) aligned to the center. Rinse the wells 3 times with 1X buffer. Hold the cassette in a raised position and close
Fill the chamber(s) with 1X buffer to the level of the clamp by moving the cam handle forward.
the cathode.
4. Make sure the wells are completely filled with 5. Hold the cassette and release the cassette clamp. 6. Make sure the power supply is off.
1X buffer.
Gently lower the casette so that it rests on the If only running one gel, remove the cassette
Load your samples and markers. bottom of the chamber, and close the cassette clamp. clamp from unused chamber.
Add 1X buffer to the level of the fill line. Place the lid on the tank and plug the
electrode cords into the power supply.
Turn the power supply on to begin electrophoresis.
Figure 24. How to use the Mini Gel Tank.
Figure 25. Electrophoresis of Bolt gel using the Mini Gel Tank. Protein
standards and samples were loaded at 10 μL sample volumes in an
Invitrogen™ Bolt™ 4–12% Bis-Tris Plus Gel. Electrophoresis was performed
using the Mini Gel Tank at 200 V (constant). Sharp, straight bands with
consistent migration patterns were observed after staining with SimplyBlue
SafeStain. Images were acquired using a flatbed scanner. Lane 1: SeeBlue
Plus2 Prestained Standard; Lane 2: 10 μg E. coli lysate; Lane 3: Mark12
Unstained Standard (blend of 12 purified proteins); Lane 4: 40 μg HeLa cell
lysate; Lane 5: 20 μg HeLa cell lysate; Lane 6: 5 μg BSA; Lane 7: 40 μg
Jurkat cell lysate; Lane 8: 5 μg GST fusion protein; Lane 9: Novex Sharp
Unstained Protein Standard; Lane 10: 5 μg β-galactosidase.
Recommended products
The Mini Blot Module is a wet transfer device that conveniently fits into
the chambers of the Mini Gel Tank to easily transfer proteins from minigels
to nitrocellulose or PVDF membranes.
1. Drop buffer core into the lower 2. Lock the gel tension wedge in 3. Place the cell lid on the unit
buffer chamber of the XCell place, load samples, and fill the and you’re ready to run.
SureLock Mini-Cell. Insert one buffer chambers with the
minigel in front of the buffer core and appropriate running buffers.
a second minigel or the buffer dam
behind the buffer core.
Recommended products
The XCell SureLock Mini-Cell can be easily adapted for transfer of proteins
from minigels to membranes by simply inserting the XCell II Blot Module
in the lower buffer chamber.
A. 1. Insert the XCell4 SureLock Assembly in its unlocked 4. The upper buffer chamber (cathode) is the void
position into the center of the Midi-Cell base. The formed between a gel and the buffer core at the
XCell4 SureLock Assembly slides down over the center of each core.
protrusion in the Midi-Cell base.
2. Place one cassette on each side of the buffer core 5. Lock the XCell4 SureLock Assembly by moving the
for each of the two cores. For each cassette, the tension lever to the locked position (indicated on the
shorter “well” side of the cassette must face out XCell4 SureLock Assembly). This will squeeze the
towards the lower buffer chamber. gels and buffer cores together, creating leak-free
seals.
B. 3. While holding the assembly together with your 6. Proceed to loading samples and buffers.
hands (A), insert the buffer cores with the gel
cassettes into the lower buffer chamber such that
the negative electrode fits into the opening in the
gold plate on the lower buffer chamber (B). Always
hold the cassette assembly by its edges as shown
in the figure.
Note: If you are having difficulty inserting the
assembly into the lower buffer chamber, make sure
the cathode (black polarity indicator) of the buffer
core is aligned with the cathode (black polarity
indicator) of the lower buffer chamber.
Figure 28. How to use the XCell4 SureLock Midi-Cell with 4 gels.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Figure 29. Quality of a precast NuPAGE Novex 4–12% Bis-Tris Midi
Gel with a variety of protein standards, lysates and purified proteins.
Electrophoresis was performed using MES running buffer and an XCell4
SureLock Midi Cell at 200 V (constant). Following electrophoresis, the
gel was stained using SimplyBlue SafeStain, destained using water, and
imaged using a flatbed scanner. Sharp, straight bands were observed.
Lanes 1, 10, 11, and 20 were each loaded with 5 μL of Mark12 Unstained
Standard (blend of 12 purified proteins). Lanes 2, 9, 12, and 19 were each
loaded with 10 μg of E. coli lysate. Lanes 3 and 18 were each loaded
with 6 μg of human IgG. Lanes 4 and 17 were each loaded with 6 μg of
human IgM. Lanes 5 and 16 were each loaded with 5 μL of SeeBlue Plus2
Prestained Protein Standard. Lanes 6 and 15 were each loaded with 5 μL
of BenchMark Protein Ladder. Lanes 7 and 14 were each loaded with
15 μL of MagicMark XP Western Protein Standard. Lanes 8 and 13 were
each loaded with 5 μL of HiMark Unstained Protein Standard.
PowerEase 90W
Power Supply
Simple, affordable power supply
specifically for minigel electrophoresis
PowerEase 300W
Power Supply Learn more at thermofisher.com/powerease
Running conditions in XCell Surelock Mini-Cell Running conditions in Mini Gel Tank
Starting End Approximate Starting Approximate
current current run time current End current run time
Voltage (V) (mA)* (mA)* (minutes) Voltage (V) (mA)* (mA)* (minutes)
Bolt 4–12% (MES) NA NA NA NA 200 160 70 20
Bolt 4–12% (MOPS) NA NA NA NA 200 160 50 35
NuPAGE 4–12% Bis-Tris 200 100 to 125 60 to 80 35 200 160 90 30
(MES)
NuPAGE 4–12% Bis-Tris 200 100 to 125 60 to 80 50 200 140 50 42
(MOPS)
Novex 4–20% Tris-Glycine 125 30 to 40 8 to 12 90 125 40 10 100
(denatured)
Novex 4–20% Tris-Glycine 125 6 to 12 3 to 6 1 to 12 125 30 10 90
(native) hours
NuPAGE 3–8% Tris-Acetate 150 40 to 55 25 to 40 60 150 60 20 50
(denatured)
NuPAGE 3–8% Tris-Acetate 150 18 7 2 to 3 hours 150 40 10 100
(native)
Novex 10–20% Tricine 125 80 40 90 125 110 40 65
NativePAGE 3–12% 150 12 to 16 2 to 4 90 to 115 150 10 <10 80
pH 3-10 IEF 100 7 NA 60 100 8 NA 60
200 NA NA 60 200 NA NA 60
500 NA 5 30 500 NA 5 30
10% Zymogram (Gelatin) 125 30 to 40 8 to 12 90 125 40 10 90
* Per gel.
Note: Run times may vary depending on the power supply and gel percentage.
Troubleshooting tips
XCell SureLock Mini-Cell troubleshooting
Observation Cause Solution
Run taking longer Buffers are too dilute Check if buffer was diluted properly. Check buffer recipe;
than usual dilute from concentrate or remake if necessary.
Upper buffer chamber is leaking Make sure the buffer core is firmly seated, the gaskets are in
place and the gel tension lever is locked.
Current reading on power Tape left on the bottom of the cassette Remove tape from bottom of cassette.
supply is zero or very low
Connection to power supply Check all connections with a voltmeter for conductance.
not complete
Insufficient buffer level Make sure the upper buffer (cathode) is covering the wells of
the gel. Be sure there is sufficient buffer in the Lower Buffer
Chamber to cover the slot at the bottom of the gel.
Run is faster than normal with Buffers are too concentrated Check buffer recipe; dilute or re-make if necessary.
poor resolution or incorrect
Cannot see the sample wells There is little contrast between the Mark cassette at the bottom of the wells with a marker pen
to load sample sample well and the rest of the gel prior to assembling the Upper Buffer Chamber. Illuminate
the bench area with a light source placed directly behind the
XCell SureLock unit.
Buffer chamber is leaking Make sure the cassette clamp is firmly seated, the gaskets
are in place and the cassette clamp is locked.
Current reading on power Tape left on the bottom of the cassette Remove tape from bottom of cassette.
supply is zero or very low
Connection to power supply Check all connections with a voltmeter for conductance.
not complete
Insufficient buffer level Make sure there is sufficient buffer in the electrophoresis tank
to cover the wells of the gel.
Run is faster than normal with Buffers are too concentrated Check buffer recipe; dilute or re-make if necessary.
poor resolution or incorrect
Current is set at a higher limit Decrease current to recommended running conditions (see
page 59).
Cannot see the sample wells There is little contrast between the Mark cassette at the bottom of the wells with a marker pen
to load sample sample well and the rest of the gel prior to placing the cassette in the electrophoresis tank.
Protein gel electrophoresis technical handbook 61
Electrophoresis troubleshooting
Problem Possible cause Suggested solution
Run taking longer time with Running buffer too dilute Make fresh running buffer and use a 1X dilution.
recommended voltage
Current too high and Running buffer too concentrated Make fresh running buffer and use a 1X dilution.
excessive heat generated
with recommended voltage
Current too low or no current Incomplete circuit Remove the tape from the bottom of the gel cassette
with recommended voltage prior to electrophoresis. Make sure the buffer covers
sample wells; check the wire connections on the
buffer core.
High salt concentration in sample Decrease the sample salt concentration by dialysis or
gel filtration.
Contaminants such as lipids or DNA com- Centrifuge or clarify the sample to remove particulate
plexes in sample contaminants. Treat sample with nuclease(s).
Poorly poured gel Make sure the gel is poured evenly and all at once.
Fuzzy bands Protein sample only partially denatured Fully denature the protein.
Protein sample only partially reduced Make sure a sufficient amount of DTT or
β-mercaptoethanol is added.
Gel runs for too long Watch the dye front as an indicator for proper
running time.
Dumbbell shaped bands or Loading a large volume of sample causes Load appropriate volume of sample.
“smiling” bands incomplete stacking If the sample is too dilute, concentrate it using
ultrafiltration.
Uneven electric field during run Try to make sure the loading is symmetrical if the protein
concentration is known.
Uneven surface of the resolving gel Try to make the resolving gel surface even while pouring
the gel.
Expired gels Use the gels before the specified expiration date; Note:
NuPAGE gels have an extended 12 month shelf life,
minimizing the risk of having expired gels.
using different methods of in-gel • Pierce Reversible stain for nitrocellulose or PVDF membranes
of specific formulations of each • An acid or alcohol wash to condition or fix the gel to limit
diffusion of protein bands from the matrix
type of method provide optimal • Treatment with the stain reagent to allow the dye or chemical to
diffuse into the gel and bind (or react with) the proteins
performance for various situations. • Destaining to remove excess dye from the background
gel matrix
Typically these stains can be classified broadly based on the dye
or molecule that helps visualize the protein stains: Depending on the particular staining method, two or more of
these functions can be accomplished with one step. For example,
Coomassie stains a dye reagent that is formulated in an acidic buffer can effectively
™
• Thermo Scientific PageBlue stain ™ fix and stain in one step. Conversely, certain functions require
several steps. For example, silver staining requires both a
• SimplyBlue SafeStain
staining reagent step and a developer step to produce the colored
• Thermo Scientific™ Imperial™ Protein Stain reaction product.
Coomassie dye
protein gel stains
Convenient, ready-to-use reagents with
no permanent chemical modification
PageBlue Protein
SimplyBlue SafeStain Imperial Protein Stain
Staining Solution
Type G-250 R-250 G-250
Compatible with:
PVDF membranes Yes Yes Yes
Nitrocellulose membranes No No No
Reusable No No Yes (up to 3x)
Feature Free of methanol and acetic acid Photographs better than Free of methanol
Coomassie G-250 dye and acetic acid
Advantages Rapid, sensitive completely non-hazardous Fast, ultrasensitive Cost-effective
(does not require methanol or acetic acid protein detection option for fast,
fixatives or destains) staining sensitive staining
Protocols
S
DI H2O DI H2O DI H2O
1. Wash the gel three 2. Add SimplyBlue 3. Wash gel with 100 mL 4. Additional water wash
times (5 minutes) with SafeStain (1 hour). of DI water for 1 hour. with 100 mL of DI water
ultrapure water. (1 hour) for increased
sensitivity.
S
DI H2O DI H2O
1. Wash the gel three 2. Add Imperial Protein Stain 3. Water destain
times with deionized (5 minutes−1 hour). (15 minutes−overnight).
water (15 minutes).
1. Wash the gel three 2. Add PageBlue Protein 3. Rinse gel two times 4. Wash gel one time Figure 32. PageBlue Protein Staining
times with ultrapure Staining Solution (1 hour). with ultrapure water with ultrapure water Solution protocol.
water (30 minutes). (<1 minute) (5 minutes)
Example data
1 2 3 4 5 6 7 8 9 10
2
3
1
Figure 33. Sensitive staining results with SimplyBlue SafeStain. The Figure 34. Two-dimensional electrophoresis (2DE) analysis of spinach
following samples were separated on a NuPAGE Novex 4-12% Bis-Tris chloroplast extract; staining with SimplyBlue SafeStain. Spinach
gel and then stained with SimplyBlue SafeStain. Lane 1: 6 μg protein mix; chloroplast extract was prefractionated in the ZOOM™ IEF Fractionator and
Lane 2: 1 μg rabbit IgG; Lane 3: 1 μg reduced BSA; Lane 4: 5 μg the individual fractions were then separated by 2DE using narrow pH range
E. coli lysate; Lane 5: 20 ng reduced BSA; Lane 6: 10 ng reduced BSA; ZOOM™ Strips and NuPAGE™ Novex 4–12% Bis-Tris ZOOM™ Gels. Gels were
Lane 7: 7 ng reduced BSA; Lane 8: 3 ng reduced BSA; Lane 9: 10 μL Coomassie stained using SimplyBlue SafeStain.
Mark12 Unstained Standard (blend of 12 purified proteins); Lane 10: 5 μL
Mark12 Unstained Standard.
1 2 3 4 5 6 7 8 9 1 2 3 4 5 6 7 8 9 1 2 3 4 5 6 7 8 9
Rabbit IgG
BSA
Protein A
Protein G
Lysozyme
5-minute stain; 1-hour stain; 1-hour stain;
15-minute water destain 2-hour water destain overnight water destain
Figure 35. Enhanced sensitivity and clear background using Imperial Protein Stain. For even
greater sensitivity and reduced background, gels can be stained with Imperial Protein Stain for 1 hour
and washed with water from 1 hour to overnight. Lane 1: BSA only (6 μg); Lane 2–9: loaded left to right
with 1,000, 200, 100, 50, 25, 12, 6, and 3 ng protein sample.
Silver stains
Ultra-sensitive stains with optimized
protocols, manufactured for
minimal variability
Advantages • Fast and sensitive staining and destaining of • Rapid, ultrasensitive and • Nanogram-level
protein gels versatile silver stain system sensitivity for silver
• Optimized for peptide recovery after in-gel • Flexible gel fixation (30 min to staining with minimal
typsin digestion for mass spectrometry overnight) and staining (5 min to background
• Flexible gel fixation (15–30 min to overnight) 20 hours)
and staining (1–30 min)
1. Wash the gel 2. Fix the gel in Fixing Solution 3. Decant the Fixing Solution
with water. for 10 minutes. and incubate the gel in 2
changes of Sensitizing Solution.
S
H 2O
SS
H 2O
8. Add the Stopping Solution directly 9. Decant the Stopping Solution and wash
to the gel when the desired the gel three times with ultrapure water.
staining intensity is reached.
SZ
10% EtOH
SZ
3. Incubate 2 x 5 minutes 4. Mix Sensitizer. Sensitize for 2 minutes, 30 seconds 2 minutes, 30 seconds
with 10% EtOH. Wash. 1 minute. Wash 2 x 1 minute. Development Time
5% Acetic Acid
D
Features:
• Simple—no destaining or timed steps required; minimal
hands-on time
Ex/Em 280 nm, 450/610 nm 300 nm, 470/510 nm 300 nm, 550/630 nm
Ease of use Ready to use Supplied as stock solution Supplied as stock solution
Compatible applications Mass spectrometry, IEF, 2D gels, Mass spectrometry, IEF, 2D gels, Mass spectrometry, IEF, 2D gels,
on-membrane staining on-membrane staining on-membrane staining
Pro-Q Emerald 488 Glycoprotein Pro-Q Emerald 300 Glycoprotein Gel Pro-Q Diamond Phosphoprotein Gel
Gel and Blot Stain Kit and Blot Stain Kit Staining Kit
Sensitivity 4 ng glycoprotein per band 0.5 ng glycoprotein per band 1–16 ng phosphoprotein per band
Advantages Selective staining of glycoproteins Selective staining of glycoproteins Selective staining of phosphoproteins
Staining pad
Destaining pad
staining and destaining to achieve The significant reduction in protein staining time is
accomplished by utilizing inonic Power Stain Solution and
desired results. When used in Destain Solution to electrophoretically drive the negatively
charged Coomassie R-250 dye out of the top gel pad, through
conjunction with Thermo Scientific™ the polyacrylamide gel matrix and the bottom gel pad, and
Pierce™ Midi and Mini Gel Power toward the positively charged anode.
*Coomassie stain solution: 45% methanol, 10% acetic acid, 0.25% Coomassie R-250
**Destain solution: 30% ethanol, 5% acetic acid
Figure 40. Pierce Power Stainer saves time and maintains sensitivity.
Recommended products
The Pierce Power System can be used both for fast Coomassie dye
staining of protein gels and for rapid semi-dry transfer of proteins from gel
to membrane. The Pierce Power Stainer can be upgraded by adding the
Pierce™ Power Blot Cassette to make a fully functional Pierce Power
System with blotting and staining capabilities.
Western blotting
Transfer and Detection
After electrophoresis, the Horseradish peroxidase (HRP) or alkaline phosphatase
(AP) are the most popular enzymes conjugated to
separated proteins are transferred antibodies used in the western blot workflow. After
incubating the membrane with the detection antibody
or blotted onto a second matrix, or antibodies, if an enzyme-conjugated antibody
was utilized, an appropriate substrate (chromogenic
generally a nitrocellulose or or chemiluminescent) is added and that results in a
detectable product. A popular substrate of choice is
polyvinylidene difluoride (PVDF) a chemiluminescent substrate that, when combined
with the enzyme, produces light as a byproduct. With
membrane. Next, the membrane the chemiluminescent substrate, the light output can
be captured on film or CCD camera. In recent years
is blocked to minimize potential fluorescent detection became a popular alternative
nonspecific binding of antibodies to the enzymatic detection since it allows for more
quantitative data analysis. Fluorescent detection
to the surface of the membrane. utilizes dye-labeled primary antibodies or dye-
labeled secondary antibodies and the signal output is
captured on an appropriate imaging system. Whatever
Detailed procedures vary widely for the detection substrate is used, the intensity of the signal should
steps of the western blot workflow. One common correlate with the abundance of the antigen on the
variation involves direct vs. indirect detection methods. blotting membrane.
In both the direct and indirect detection methods,
the blocked membrane is probed with an antibody We offer a wide range of reagents, kits, equipment,
(primary antibody) specific to the protein of interest and antibodies to facilitate every step of western
(antigen). In direct detection techniques, this antibody blot analysis.
is enzyme conjugated or labeled with a fluorophore.
However, in indirect detection techniques, the blocked
membrane is probed first with an antibody (primary
antibody) which is specific to the antigen followed
by another antibody (secondary antibody) raised
against the host species of the primary antibody. This
secondary antibody is often enzyme conjugated or
labeled with a fluorophore. The direct method is not
widely used as most researchers prefer the indirect
detection method for a variety of reasons.
75 75
Protein gel electrophoresis technical handbook
Mini Blot Module Thermo Scientific Pierce iBlot™ 2 Dry Blotting System
Power Blotter
Blocking buffers
Wash buffers
Detergents
Enhancers
Substrates
Stripping buffers
X-ray film
* Run times may vary depending upon gel type and power supply.
QUICK REFERENCE
Load Sample Load the appropriate concentration of your protein sample on the gel.
Load Sample Load the appropriate concentration of your protein sample on the gel.
Load Buffer Fill the Upper (200 mL) and Lower (600 mL) Buffer Chambers with the
Load Buffer Fill the Upper (200 mL) and Lower (600 mL) Buffer Chambers with the ap- appropriate 1X Running Buffer. For reduced samples, use 200 mL 1X
propriate 1X Running Buffer. For reduced samples, use 200 mL 1X Running Running Buffer with 500 μL NuPAGE Antioxidant in the Upper Buffer Chamber.
Buffer with 500 μL NuPAGE Antioxidant in the Upper Buffer Chamber.
Run Voltage: 150 V constant
Run Voltage: 200 V constant Run Time: 1 hour (Denaturing gel), 2–3 hours (Native gel)
Conditions
Conditions Run Time: 35 minutes (MES Buffer), 50 minutes (MOPS Buffer) Expected 40–55 mA/gel (start); 25–40 mA/gel (end) for denaturing gel
Expected Current: 100–125 mA/gel (start); 60–80 mA/gel (end) Current: 18 mA/gel (start); 7 mA/gel (end) for native gel
Intended Use: For research use only. Not for human or animal therapeutic or diagnostic use.
Protein gel electrophoresis technical handbook 77
QUICK REFERENCE
Prepare Add 50 mL 20X NuPAGE MES or MOPS SDS Running Buffer to 950 mL Prepare Denaturing samples: Add 50 mL 20X NuPAGE Tris-Acetate SDS Running Buffer
1X Buffer deionized water to prepare 1X SDS Running Buffer. 1X Buffer to 950 mL deionized water. Native samples: Add 100 mL 10X Tris-Glycine
Native Running Buffer to 900 mL deionized water.
Load Sample Load the appropriate concentration of your protein sample on the gel.
Load Sample Load the appropriate concentration of your protein sample on the gel.
Add Buffer Fill Upper Buffer Chamber with 175 mL 1X NuPAGE SDS Running Buffer.
For reduced samples, use 175 mL 1X NuPAGE SDS Running Buffer with Add Buffer Fill Upper Buffer Chamber with 175 mL of the appropriate 1X Running Buffer.
435 μL NuPAGE Antioxidant in the Upper Buffer Chamber. Add a sufficient For reduced samples, use 175 mL 1X Running Buffer with 435 μL NuPAGE
volume of 1X NuPAGE SDS Running Buffer to the Lower Buffer Chamber. Antioxidant in the Upper Buffer Chamber. Add a sufficient volume of Running
Buffer the Lower Buffer Chamber.
Run Voltage: 200 V constant
Conditions Run Time: 40 min (MES Buffer), 55 min (MOPS Buffer) Run Voltage: 150 V constant
Expected Current: 160–200 mA/gel (start); 120–170 mA/gel (end) Conditions Run Time: 70 min (denaturing gel), 2–3 hours (native gel)
Expected Current: 70–90 mA/gel (start); 50–60 mA/gel (end); (denaturing gel)
40–45 mA/gel (start); 15–20 mA/gel (end); (native gel)
For Research Use Only. Not for use in diagnostic procedures.
QUICK REFERENCE
Run Voltage: 125 V constant Blot Gel For blotting denaturing and native gels, use 1X Tris-Glycine Transfer Buffer
Run Time: 90 minutes (dependent on gel percentage) with 20% methanol. Perform blotting at 25 V constant for 1–2 hours using
Conditions the XCell II Blot Module. The expected start current is 100 mA.
Expected Current: 30–40 mA/gel (start); 8–12 mA/gel (end)
Intended Use: For research use only. Not for human or animal therapeutic
or diagnostic use.
Appendix
78 Appendix
Add Buffer Fill each Upper Buffer Chamber with 175 mL 1X Tris-Glycine SDS Running Buffer. Run Voltage: 125 V constant
Fill the Lower Buffer Chamber up to the fill line mark with 1X Tris-Glycine Conditions Run Time: 1–12 hours
SDS Running Buffer. Expected Current: 35–40 mA/gel (start); 15–20 mA/gel
Voltage: 125 V constant
Run Run Time: 105 min (dependent on gel percentage)
Conditions Expected Current: 40–50 mA/gel (start); 20–25 mA/gel (end)
QUICK REFERENCE
Load Sample Fill wells with 1X NativePAGE™ Cathode Buffer and load samples prior to filling
the cathode chamber. Load an appropriate amount of your sample on the gel.
Add Buffer Fill the Upper Buffer Chamber with ~200 mL 1X NativePAGE™ Cathode Buffer.
Fill the Lower Buffer Chamber with ~550 mL 1X NativePAGE™ Anode Buffer.
QUICK REFERENCE
Prepare 1X Add 100 mL 10X Novex Tricine SDS Running Buffer to 900 mL deionized
Buffer water to prepare 1X Tricine SDS Running Buffer.
Load Sample Load the appropriate concentration of your protein sample on the gel.
Load Buffer Fill the Upper Buffer Chamber with 200 mL and the Lower Buffer Chamber
with 600 mL of 1X Tricine SDS Running Buffer.
For research use only. Not for human or animal therapeutic or diagnostic use.
QUICK REFERENCE
Appendix
80 Appendix
QUICK REFERENCE
Zymogram Gels Zymogram Gels
Instructions are provided below for electrophoresis of Zymogram Gels using the XCell Develop Gel 1. Dilute Zymogram Renaturing Buffer (10X) and Zymogram Developing Buffer
SureLock Mini-Cell. (10X) 1:9 with deionized water. Prepare 100 mL of each 1X buffer per 1–2
mini-gels.
Prepare 2. After electrophoresis, incubate the gel in 1X Zymogram Renaturing Buffer
Reagent Sample
Samples for 30 minutes at room temperature with gentle agitation.
Sample x μL
Tris-Glycine SDS Sample Buffer (2X) 5 μL 3. Decant Zymogram Renaturing Buffer and add 1X Zymogram Developing
Buffer to the gel.
Deionized Water to 10 μL final
4. Equilibrate the gel for 30 minutes at room temperature with gentle agitation.
Do not heat or reduce samples for Zymogram gels.
5. Decant buffer and add fresh 1X Zymogram Developing Buffer to the gel.
Prepare 1X Tris-Glycine SDS Running Buffer: Add 100 mL 10X Tris-Glycine SDS 6. Incubate the gel at 37°C for at least 4 hours or overnight for maximum
1X Buffer Running Buffer to 900 mL deionized water. sensitivity. Optimize results empirically by varying the sample load or
incubation time.
Load Sample Load the appropriate concentration and volume of your protein on the gel.
Stain Gel Zymogram (Blue Casein) 4–16% gels do not require staining. For non-pre-
Add Buffer Fill the Upper Buffer Chamber with 200 mL, and the Lower Buffer Chamber stained Zymogram gels, stain the gels with Colloidal Blue Staining Kit or
with 600 mL of 1X Tris-Glycine SDS Running Buffer. the SimplyBlue Safestain. Areas of protease activity appear as clear bands
against a dark background.
Run Voltage: 125 V constant
Run Time: 90 minutes (dependent on gel percentage) Sensitivity 10% Zymogram (Gelatin) Gel: 10-6 units of collagenase
Conditions
Expected Current: 30–40 mA/gel (start); 8–12 mA/gel (end) Level 12% Zymogram (Casein) Gel: 7 × 10-4 units of trypsin
4–16% Zymogram (Blue Casein) Gel: 1.5 × 10-3 units of trypsin
For Research Use Only. Not for use in diagnostic procedures.
Protein gel electrophoresis technical handbook 81
Ordering information
Product Quantity Cat. No. Product Quantity Cat. No.
Select precast gel Bolt Bis-Tris Plus Gels NuPAGE™ Novex™ 10% Bis-Tris Protein 1 box NP0307BOX
™
Bolt 8% Bis-Tris Plus Gels, 10-well 1 box NW00080BOX Gels, 1.0 mm, 9-well
Bolt™ 8% Bis-Tris Plus Gels, 12-well 1 box NW00082BOX NuPAGE™ Novex™ 10% Bis-Tris Protein 1 box NP0315BOX
Gels, 1.5 mm, 10-well
Bolt™ 8% Bis-Tris Plus Gels, 15-well 1 box NW00085BOX
NuPAGE™ Novex™ 10% Bis-Tris Protein 1 box NP0316BOX
Bolt™ 8% Bis-Tris Plus Gels, 17-well 1 box NW00087BOX Gels, 1.5 mm, 15-well
Bolt™ 10% Bis-Tris Plus Gels, 10-well 1 box NW00100BOX NuPAGE™ Novex™ 12% Bis-Tris Protein 1 box NP0344BOX
™
Bolt 10% Bis-Tris Plus Gels, 12-well 1 box NW00102BOX Gels, 1.0 mm, 1-well
Bolt™ 10% Bis-Tris Plus Gels, 15-well 1 box NW00105BOX NuPAGE™ Novex™ 12% Bis-Tris Protein 10 gels NP0341BOX
™
Gels, 1.0 mm, 10-well
Bolt 10% Bis-Tris Plus Gels, 17-well 1 box NW00107BOX
™
NuPAGE™ Novex™ 12% Bis-Tris Protein 2 gels NP0341PK2
Bolt 12% Bis-Tris Plus Gels, 10-well 1 box NW00120BOX
Gels, 1.0 mm, 10-well
Bolt™ 12% Bis-Tris Plus Gels, 12-well 1 box NW00122BOX
NuPAGE™ Novex™ 12% Bis-Tris Protein 10 gels NP0342BOX
™
Bolt 12% Bis-Tris Plus Gels, 15-well 1 box NW00125BOX Gels, 1.0 mm, 12-well
Bolt™ 12% Bis-Tris Plus Gels, 17-well 1 box NW00127BOX NuPAGE™ Novex™ 12% Bis-Tris Protein 2 gels NP0342PK2
™ Gels, 1.0 mm, 12-well
Bolt 4–12% Bis-Tris Plus Gels, 10-well 1 box NW04120BOX
™ NuPAGE™ Novex™ 12% Bis-Tris Protein 1 box NP0343BOX
Bolt 4–12% Bis-Tris Plus Gels, 12-well 1 box NW04122BOX
Gels, 1.0 mm, 15-well
Bolt™ 4–12% Bis-Tris Plus Gels, 15-well 1 box NW04125BOX
NuPAGE™ Novex™ 12% Bis-Tris Protein 1 box NP0349BOX
™
Bolt 4–12% Bis-Tris Plus Gels, 17-well 1 box NW04127BOX Gels, 1.0 mm, 17-well
Bolt™ Empty Mini Gel Cassettes 20 cassettes NW2010 NuPAGE™ Novex™ 4–12% Bis-Tris 1 box NP0324BOX
™
Bolt Empty Mini Gel Cassette Combs, 20 combs NW3010 Protein Gels, 1.0 mm, 1-well
10-well NuPAGE™ Novex™ 4–12% Bis-Tris 10 gels NP0321BOX
Bolt™ Empty Mini Gel Cassette Combs, 20 combs NW3012 Protein Gels, 1.0 mm, 10-well
12-well NuPAGE™ Novex™ 4–12% Bis-Tris 2 gels NP0321PK2
™
Bolt Welcome Pack B, 4–12%, 15-well 1 kit** NW0412B Protein Gels, 1.0 mm, 10-well
Bolt™ Welcome Pack A, 4–12%, 10-well 1 kit** NW0412A NuPAGE™ Novex™ 4–12% Bis-Tris 10 gels NP0322BOX
Protein Gels, 1.0 mm, 12-well
One box contains 10 gels.
** Bolt Welcome Pack kit includes Mini Gel Tank, 2 boxes of Bolt 4–12% Gels NuPAGE™ Novex™ 4–12% Bis-Tris 2 gels NP0322PK2
(10-well/15-well), Bolt MES Running Buffer (20X), Bolt LDS Sample Buffer (4X), Bolt Protein Gels, 1.0 mm, 12-well
Sample Reducing Agent (10X) and SeeBlue™ Plus2 Prestained Standard
NuPAGE™ Novex™ 4–12% Bis-Tris 10 gels NP0323BOX
NuPAGE Bis-Tris Mini Gels (8 cm x 8 cm) Protein Gels, 1.0 mm, 15-well
NuPAGE™ Novex™ 10% Bis-Tris Protein 1 box NP0304BOX NuPAGE™ Novex™ 4–12% Bis-Tris 2 gels NP0323PK2
Gels, 1.0 mm, 1-well Protein Gels, 1.0 mm, 15-well
NuPAGE™ Novex™ 10% Bis-Tris Protein 10 gels NP0301BOX NuPAGE™ Novex™ 4–12% Bis-Tris 10 gels NP0329BOX
Gels, 1.0 mm, 10-well Protein Gels, 1.0 mm, 17-well
NuPAGE™ Novex™ 10% Bis-Tris Protein 2 gels NP0301PK2 NuPAGE™ Novex™ 4–12% Bis-Tris 2 gels NP0329PK2
Gels, 1.0 mm, 10-well Protein Gels, 1.0 mm, 17-well
NuPAGE™ Novex™ 10% Bis-Tris Protein 10 gels NP0302BOX NuPAGE™ Novex™ 4–12% Bis-Tris 1 box NP0327BOX
Gels, 1.0 mm, 12-well Protein Gels, 1.0 mm, 9-well
NuPAGE™ Novex™ 10% Bis-Tris Protein 2 gels NP0302PK2 NuPAGE™ Novex™ 4–12% Bis-Tris 10 gels NP0335BOX
Gels, 1.0 mm, 12-well Protein Gels, 1.5 mm, 10-well
NuPAGE™ Novex™ 10% Bis-Tris Protein 1 box NP0303BOX NuPAGE™ Novex™ 4–12% Bis-Tris 2 gels NP0335PK2
Gels, 1.0 mm, 15-well Protein Gels, 1.5 mm, 10-well
Appendix
82 Appendix
Ordering information
Product Quantity Cat. No. Product Quantity Cat. No.
NuPAGE™ Novex™ 4–12% Bis-Tris 10 gels NP0336BOX NuPAGE™ Novex™ 3–8% Tris-Acetate 2 gels EA0375PK2
Protein Gels, 1.5 mm, 15-well Protein Gels, 1.0 mm, 10-well
NuPAGE™ Novex™ 4–12% Bis-Tris 2 gels NP0336PK2 NuPAGE™ Novex™ 3–8% Tris-Acetate 10 gels EA03752BOX
Protein Gels, 1.5 mm, 15-well Protein Gels, 1.0 mm, 12-well
NuPAGE Bis-Tris Midi Gels (8 cm x 13 cm) NuPAGE™ Novex™ 3–8% Tris-Acetate 2 gels EA03752PK2
™ ™
NuPAGE Novex 10% Bis-Tris Midi 1 box WG1201BOX Protein Gels, 1.0 mm, 12-well
Protein Gels, 12+2-well NuPAGE™ Novex™ 3–8% Tris-Acetate 1 box EA03755BOX
™ ™
NuPAGE Novex 10% Bis-Tris Midi 1 box WG1201A Protein Gels, 1.0 mm, 15-well
Protein Gels, 12+2-well, w/adapters NuPAGE™ Novex™ 3–8% Tris-Acetate 1 box EA0378BOX
NuPAGE™ Novex™ 10% Bis-Tris Midi 1 box WG1202BOX Protein Gels, 1.5 mm, 10-well
Protein Gels, 20-well NuPAGE™ Novex™ 3–8% Tris-Acetate 1 box EA03785BOX
™ ™
NuPAGE Novex 10% Bis-Tris Midi 1 box WG1202A Protein Gels, 1.5 mm, 15-well
Protein Gels, 20-well, w/adapters NuPAGE™ Novex™ 7% Tris-Acetate 1 box EA0355BOX
™ ™
NuPAGE Novex 10% Bis-Tris Midi 1 box WG1203BOX Protein Gels, 1.0 mm, 10-well
Protein Gels, 26-well NuPAGE™ Novex™ 7% Tris-Acetate 1 box EA03552BOX
NuPAGE™ Novex™ 10% Bis-Tris Midi 1 box WG1203A Protein Gels, 1.0 mm, 12-well
Protein Gels, 26-well, w/adapters NuPAGE™ Novex™ 7% Tris-Acetate 1 box EA03555BOX
™ ™
NuPAGE Novex 4–12% Bis-Tris Midi 1 box WG1401BOX Protein Gels, 1.0 mm, 15-well
Protein Gels, 12+2-well NuPAGE™ Novex™ 7% Tris-Acetate 1 box EA0358BOX
™ ™
NuPAGE Novex 4–12% Bis-Tris Midi 1 box WG1401A Protein Gels, 1.5 mm, 10-well
Protein Gels, 12+2-well, w/adapters NuPAGE™ Novex™ 7% Tris-Acetate 1 box EA03585BOX
™ ™
NuPAGE Novex 4–12% Bis-Tris Midi 1 box WG1402BOX Protein Gels, 1.5 mm, 15-well
Protein Gels, 20-well NuPAGE Tris-Acetate Midi Gels (8 cm x 8 cm)
NuPAGE™ Novex™ 4–12% Bis-Tris Midi 1 box WG1402A NuPAGE™ Novex™ 3–8% Tris-Acetate 1 box WG1601BOX
Protein Gels, 20-well, w/adapters Midi Protein Gels, 12+2W
NuPAGE™ Novex™ 4–12% Bis-Tris Midi 1 box WG1403BOX NuPAGE™ Novex™ 3–8% Tris-Acetate 1 box WG1601A
Protein Gels, 26-well Midi Protein Gels, 12+2W, w/adapters
NuPAGE™ Novex™ 4–12% Bis-Tris Midi 1 box WG1403A NuPAGE™ Novex™ 3–8% Tris-Acetate 1 box WG1602BOX
Protein Gels, 26-well, w/adapters Midi Protein Gels, 20W
NuPAGE™ Novex™ 8% Bis-Tris Midi 1 box WG1001BOX NuPAGE™ Novex™ 3–8% Tris-Acetate 1 box WG1602A
Protein Gels, 12+2-well Midi Protein Gels, 20W, w/adapters
NuPAGE™ Novex™ 8% Bis-Tris Midi 1 box WG1001A NuPAGE™ Novex™ 3–8% Tris-Acetate 1 box WG1603BOX
Protein Gels, 12+2-well, w/adapters Midi Protein Gels, 26W
NuPAGE™ Novex™ 8% Bis-Tris Midi 1 box WG1002BOX NuPAGE™ Novex™ 3–8% Tris-Acetate 1 box WG1603A
Protein Gels, 20-well Midi Protein Gels, 26W, w/adapters
NuPAGE™ Novex™ 8% Bis-Tris Midi 1 box WG1002A Novex Tris-Glycine Mini Gels (8 cm x 8 cm)
Protein Gels, 20-well, w/adapters Novex™ 10% Tris-Glycine Mini Protein 1 box EC6075BOX
™ ™
NuPAGE Novex 8% Bis-Tris Midi 1 box WG1003BOX Gels, 1.0 mm, 10-well
Protein Gels, 26-well Novex™ 10% Tris-Glycine Mini Protein 3 boxes EC6075BX30
™ ™
NuPAGE Novex 8% Bis-Tris Midi 1 box WG1003A Gels, 1.0 mm, 10-well - Value Pack
Protein Gels, 26-well, w/adapters Novex™ 10% Tris-Glycine Mini Protein 1 box EC60752BOX
NuPAGE Tris-Acetate Mini Gels (8 cm x 8 cm) Gels, 1.0 mm, 12-well
NuPAGE™ Novex™ 3–8% Tris-Acetate 10 gels EA0375BOX Novex™ 10% Tris-Glycine Mini Protein 1 box EC60755BOX
Protein Gels, 1.0 mm, 10-well Gels, 1.0 mm, 15-well
Protein gel electrophoresis technical handbook 83
Novex™ 10% Tris-Glycine Mini Protein 1 box EC6078BOX Novex™ 18% Tris-Glycine Mini Protein 1 box EC6505BOX
Gels, 1.5 mm, 10-well Gels, 1.0 mm, 10-well
Novex™ 10% Tris-Glycine Mini Protein 1 box EC60785BOX Novex™ 18% Tris-Glycine Mini Protein 1 box EC65052BOX
Gels, 1.5 mm, 15-well Gels, 1.0 mm, 12-well
Novex™ 10–20% Tris-Glycine Mini 1 box EC6135BOX Novex™ 18% Tris-Glycine Mini Protein 1 box EC65055BOX
Protein Gels, 1.0 mm, 10-well Gels, 1.0 mm, 15-well
Novex™ 10–20% Tris-Glycine Mini 1 box EC61352BOX Novex™ 18% Tris-Glycine Mini Protein 1 box EC6508BOX
Protein Gels, 1.0 mm, 12-well Gels, 1.5 mm, 10-well
Novex™ 10–20% Tris-Glycine Mini 1 box EC61355BOX Novex™ 18% Tris-Glycine Mini Protein 1 box EC65085BOX
Protein Gels, 1.0 mm, 15-well Gels, 1.5 mm, 15-well
Novex™ 10–20% Tris-Glycine Mini 1 box EC61385BOX Novex™ 4% Tris-Glycine Mini Protein 1 box EC6055BOX
Protein Gels, 1.5 mm, 15-well Gels, 1.0 mm, 10-well
Novex™ 12% Tris-Glycine Mini Protein 1 box EC6001BOX Novex™ 4% Tris-Glycine Mini Protein 1 box EC60552BOX
Gels, 1.0 mm, 1-well Gels, 1.0 mm, 12-well
Novex™ 12% Tris-Glycine Mini Protein 1 box EC6005BOX Novex™ 4% Tris-Glycine Mini Protein 1 box EC6058BOX
Gels, 1.0 mm, 10-well Gels, 1.5 mm, 10-well
Novex™ 12% Tris-Glycine Mini Protein 1 box EC60052BOX Novex™ 4% Tris-Glycine Mini Protein 1 box EC60585BOX
Gels, 1.0 mm, 12-well Gels, 1.5 mm, 15-well
Novex™ 12% Tris-Glycine Mini Protein 1 box EC60055BOX Novex™ 4–12% Tris-Glycine Mini Protein 1 box EC6035BOX
Gels, 1.0 mm, 15-well Gels, 1.0 mm, 10-well
Novex™ 12% Tris-Glycine Mini Protein 1 box EC6008BOX Novex™ 4–12% Tris-Glycine Mini Protein 1 box EC60352BOX
Gels, 1.5 mm, 10-well Gels, 1.0 mm, 12-well
Novex™ 12% Tris-Glycine Mini Protein 1 box EC60085BOX Novex™ 4–12% Tris-Glycine Mini Protein 1 box EC60355BOX
Gels, 1.5 mm, 15-well Gels, 1.0 mm, 15-well
Novex™ 14% Tris-Glycine Mini Protein 1 box EC6485BOX Novex™ 4–12% Tris-Glycine Mini Protein 1 box EC6038BOX
Gels, 1.0 mm, 10-well Gels, 1.5 mm, 10-well
Novex™ 14% Tris-Glycine Mini Protein 1 box EC64852BOX Novex™ 4–12% Tris-Glycine Mini Protein 1 box EC60385BOX
Gels, 1.0 mm, 12-well Gels, 1.5 mm, 15-well
Novex™ 14% Tris-Glycine Mini Protein 1 box EC64855BOX Novex™ 4–20% Tris-Glycine Mini Protein 1 box EC6021BOX
Gels, 1.0 mm, 15-well Gels, 1.0 mm, 1-well
Novex™ 14% Tris-Glycine Mini Protein 1 box EC6488BOX Novex™ 4–20% Tris-Glycine Mini Protein 1 box EC6025BOX
Gels, 1.5 mm, 10-well Gels, 1.0 mm, 10-well
Novex™ 14% Tris-Glycine Mini Protein 1 box EC64885BOX Novex™ 4–20% Tris-Glycine Mini Protein 1 box EC60252BOX
Gels, 1.5 mm, 15-well Gels, 1.0 mm, 12-well
Novex™ 16% Tris-Glycine Mini Protein 1 box EC6495BOX Novex™ 4–20% Tris-Glycine Mini Protein 1 box EC60255BOX
Gels, 1.0 mm, 10-well Gels, 1.0 mm, 15-well
Novex™ 16% Tris-Glycine Mini Protein 1 box EC64952BOX Novex™ 4–20% Tris-Glycine Mini Protein 1 box EC60249BOX
Gels, 1.0 mm, 12-well Gels, 1.0 mm, 9-well
Novex™ 16% Tris-Glycine Mini Protein 1 box EC64955BOX Novex™ 4–20% Tris-Glycine Mini Protein 1 box EC6028BOX
Gels, 1.0 mm, 15-well Gels, 1.5 mm, 10-well
Novex™ 16% Tris-Glycine Mini Protein 1 box EC6498BOX Novex™ 4–20% Tris-Glycine Mini Protein 1 box EC60285BOX
Gels, 1.5 mm, 10-well Gels, 1.5 mm, 15-well
Novex™ 16% Tris-Glycine Mini Protein 1 box EC64985BOX Novex™ 6% Tris-Glycine Mini Protein 1 box EC6065BOX
Gels, 1.5 mm, 15-well Gels, 1.0 mm, 10-well
Appendix
84 Appendix
Ordering information
Product Quantity Cat. No. Product Quantity Cat. No.
Novex™ 6% Tris-Glycine Mini Protein 1 box EC60652BOX Novex™ 4–20% Tris-Glycine Midi 1 box WT4201A
Gels, 1.0 mm, 12-well Protein Gels, 12+2-well, w/adapters
Novex™ 6% Tris-Glycine Mini Protein 1 box EC60655BOX Novex™ 4–20% Tris-Glycine Midi 1 box WT4202BOX
Gels, 1.0 mm, 15-well Protein Gels, 20-well
Novex Tris-Glycine Midi Gels (8 cm x 13 cm) Novex™ 4–20% Tris-Glycine Midi 1 box WT4202A
™
Novex 10% Tris-Glycine Midi Protein 1 box WT0101BOX Protein Gels, 20-well, w/adapters
Gels, 12+2-well Novex™ 4–20% Tris-Glycine Midi 1 box WT4203BOX
™
Novex 10% Tris-Glycine Midi Protein 1 box WT0101A Protein Gels, 26-well
Gels, 12+2-well, w/adapters Novex™ 4–20% Tris-Glycine Midi 1 box WT4203A
Novex™ 10% Tris-Glycine Midi Protein 1 box WT0102BOX Protein Gels, 26-well, w/adapters
Gels, 20-well Novex™ 8% Tris-Glycine Midi Protein 1 box WT0081BOX
™
Novex 10% Tris-Glycine Midi Protein 1 box WT0102A Gels, 12+2-well
Gels, 20-well, w/adapters Novex™ 8% Tris-Glycine Midi Protein 1 box WT0081A
™
Novex 10% Tris-Glycine Midi Protein 1 box WT0103BOX Gels, 12+2-well, w/adapters
Gels, 26-well Novex™ 8% Tris-Glycine Midi Protein 1 box WT0082BOX
Novex™ 10% Tris-Glycine Midi Protein 1 box WT0103A Gels, 20-well
Gels, 26-well, w/adapters Novex™ 8% Tris-Glycine Midi Protein 1 box WT0082A
™
Novex 12% Tris-Glycine Midi Protein 1 box WT0121BOX Gels, 20-well, w/adapters
Gels, 12+2-well Novex™ 8% Tris-Glycine Midi Protein 1 box WT0083BOX
™
Novex 12% Tris-Glycine Midi Protein 1 box WT0121A Gels, 26-well
Gels, 12+2-well, w/adapters Novex™ 8% Tris-Glycine Midi Protein 1 box WT0083A
™
Novex 12% Tris-Glycine Midi Protein 1 box WT0122BOX Gels, 26-well, w/adapters
Gels, 20-well Novex™ 8–16% Tris-Glycine Midi Protein 1 box WT8161BOX
™
Novex 12% Tris-Glycine Midi Protein 1 box WT0122A Gels, 12+2-well
Gels, 20-well, w/adapters Novex™ 8–16% Tris-Glycine Midi Protein 1 box WT8161A
™
Novex 12% Tris-Glycine Midi Protein 1 box WT0123BOX Gels, 12+2-well, w/adapters
Gels, 26-well Novex™ 8–16% Tris-Glycine Midi Protein 1 box WT8162BOX
™
Novex 12% Tris-Glycine Midi Protein 1 box WT0123A Gels, 20-well
Gels, 26-well, w/adapters Novex™ 8–16% Tris-Glycine Midi Protein 1 box WT8162A
™
Novex 4–12% Tris-Glycine Midi Protein 1 box WT4121BOX Gels, 20-well, w/adapters
Gels, 12+2-well Novex™ 8–16% Tris-Glycine Midi Protein 1 box WT8163BOX
™
Novex 4–12% Tris-Glycine Midi Protein 1 box WT4121A Gels, 26-well
Gels, 12+2-well, w/adapters Novex™ 8–16% Tris-Glycine Midi Protein 1 box WT8163A
™
Novex 4–12% Tris-Glycine Midi Protein 1 box WT4122BOX Gels, 26-well, w/adapters
Gels, 20-well NativePAGE Gels
Novex™ 4–12% Tris-Glycine Midi Protein 1 box WT4122A NativePAGE™ Novex™ 3–12% Bis-Tris 1 box BN1001BOX
Gels, 20-well, w/adapters Protein Gels, 1.0 mm, 10-well
Novex™ 4–12% Tris-Glycine Midi Protein 1 box WT4123BOX NativePAGE™ Novex™ 3–12% Bis-Tris 1 box BN1003BOX
Gels, 26-well Protein Gels, 1.0 mm, 15-well
Novex™ 4–12% Tris-Glycine Midi Protein 1 box WT4123A NativePAGE™ Novex™ 4–16% Bis-Tris 1 box BN1002BOX
Gels, 26-well, w/adapters Protein Gels, 1.0 mm, 10-well
Novex™ 4–20% Tris-Glycine Midi 1 box WT4201BOX NativePAGE™ Novex™ 4–16% Bis-Tris 1 box BN1004BOX
Protein Gels, 12+2-well Protein Gels, 1.0 mm, 15-well
Protein gel electrophoresis technical handbook 85
Novex™ 10% Tricine Protein Gels, 1 box EC66752BOX Bolt Transfer Buffer (20X) 125 mL BT0006
1.0 mm, 12-well Bolt Transfer Buffer (20X) 1L BT00061
Novex™ 16% Tricine Protein Gels, 1 box EC6695BOX 4X Bolt LDS Sample Buffer 10 mL B0007
1.0 mm, 10-well
20X Bolt MES SDS Running Buffer 500 mL B0002
Novex™ 16% Tricine Protein Gels, 1 box EC66952BOX
1.0 mm, 12-well 20X Bolt MES SDS Running Buffer 5L B0002-02
Novex™ 16% Tricine Protein Gels, 1 box EC66955BOX 20X Bolt MOPS SDS Running Buffer 500 mL B0001
1.0 mm, 15-well 20X Bolt MOPS SDS Running Buffer 5L B0001-02
™
Novex 10–20% Tricine Protein Gels, 1 box EC6625BOX Bolt Antioxidant 15 mL BT0005
1.0 mm, 10-well
NuPAGE Tris-Acetate SDS Running 500 mL LA0041
Novex™ 10–20% Tricine Protein Gels, 1 box EC66252BOX Buffer (20X)
1.0 mm, 12-well
NuPAGE™ MOPS SDS Running Buffer 500 mL NP0001
Novex™ 10–20% Tricine Protein Gels, 1 box EC66255BOX (20X)
1.0 mm, 15-well
NuPAGE™ MOPS SDS Running Buffer 5L NP000102
Novex IEF Gels (20X)
Novex™ pH 3–7 IEF Protein Gels, 5 gels⁄box EC66452BOX NuPAGE™ MES SDS Running Buffer 5L NP000202
1.0 mm, 12-well (20X)
Novex™ pH 3–7 IEF Protein Gels, 5 gels⁄box EC6645BOX NuPAGE™ MES SDS Running Buffer 500 mL NP0002
1.0 mm, 10-well (20X)
Novex™ pH 3–10 IEF Protein Gels, 5 gels⁄box EC6655BOX Novex Tris-Glycine SDS Running Buffer 4x1L LC26754
1.0 mm, 10-well (10X)
Novex Zymogram Gels
Novex Tris-Glycine SDS Running Buffer 500 mL LC2675
Novex™ 12% Zymogram (Casein) 1 box EC64052BOX (10X)
Protein Gels, 1.0 mm, 12-well
Novex Tris-Glycine SDS Running Buffer 5L LC26755
Novex™ 4–16% Zymogram (Blue Casein) 1 box EC6415BOX (10X)
Protein Gels, 1.0 mm, 10-well
Novex™ Tricine SDS Running Buffer 500 mL LC1675
Novex™ 12% Zymogram (Casein) 1 box EC6405BOX (10X)
Protein Gels, 1.0 mm, 10-well
NuPAGE™ LDS Sample Buffer (4X) 10 mL NP0007
Novex™ 10% Zymogram (Gelatin) 1 box EC61755BOX ™
Novex Tricine SDS Sample Buffer (2X) 20 mL LC1676
Protein Gels, 1.0 mm, 15-well
Novex Tris-Glycine SDS Sample Buffer 20 mL LC2676
Novex™ 10% Zymogram (Gelatin) 1 box EC61752BOX
(2X)
Protein Gels, 1.0 mm, 12-well
Novex™ Tris-Glycine Transfer Buffer 500 mL LC3675
Novex™ 10% Zymogram (Gelatin) 1 box EC6175BOX
(25X)
Protein Gels, 1.0 mm, 10-well
E-PAGE™ High Throughput Gel System NuPAGE™ Transfer Buffer (20X) 125 mL NP0006
™
E-PAGE™ 8% Protein Gels, 48-well 8 gels EP04808 NuPAGE Transfer Buffer (20X) 1L NP00061
™
E-Holder™ Platform 2 units EH03 NuPAGE Antioxidant 15 mL NP0005
™
E-PAGE™ Loading Buffer 1 4.5 mL EPBUF01 Novex Tris-Glycine SDS Buffer Kit 1 kit LC2677
™
E-PAGE™ 6% Protein Gels, 96-well 8 gels EP09606 NuPAGE MOPS SDS Buffer Kit 1 kit NP0050
(for Bis-Tris Gels)
Daughter E-Base™ Device 1 unit EBD03
NuPAGE™ MES SDS Buffer Kit 1 kit NP0060
™
Mother E-Base Device 1 unit EBM03 (for Bis-Tris Gels)
Appendix
86 Appendix
Ordering information
Product Quantity Cat. No. Product Quantity Cat. No.
NuPAGE™ Tris-Acetate SDS Buffer Kit 1 kit LA0050 Select Protein Standards: Unstained
(for Tris-Acetate gels), Contains 1 ea. PageRuler™ Unstained Low Range 2 x 250 μL 26632
LA0041, NP0004, NP0005, NP0007 Protein Ladder
Novex™ Tricine SDS Buffer Kit, 1 kit LC1677 PageRuler™ Unstained Protein Ladder 2 x 250 μL 26614
includes LC1676 & LC1675
NativeMark Unstained Protein Standard 5 x 50 μL LC0725
Pierce LDS Sample Buffer, Non- 5 mL 84788
Prestained
Reducing (4X)
PageRuler™ Prestained Protein Ladder 2 x 250 μL 26616
Pierce Lane Marker Non-Reducing 5 mL 39001
Sample Buffer PageRuler™ Prestained Protein Ladder 10 x 250 μL 26617
™
Pierce 10X Tris-Glycine SDS Buffer 1L 28362 PageRuler Plus Prestained 2 x 250 μL 26619
Protein Ladder
BupH™ Tris-Glycine-SDS Buffer Packs 40 packs 28378
PageRuler™ Plus Prestained 10 x 250 μL 26620
Native Electrophoresis
Protein Ladder
Novex Tris-Glycine Native Running 500 mL LC2672
Spectra™ Multicolor Broad Range 2 x 250 μL 26634
Buffer (10X)
Protein Ladder
Novex Tris-Glycine Native Sample 20 mL LC2673
Spectra™ Multicolor Broad Range 10 x 250 μL 26623
Buffer (2X)
Protein Ladder
NativePAGE™ Running Buffer (20X) 1L BN2001
HiMark™ Prestained Protein Standard 250 μL LC5699
NativePAGE™ Running Buffer Kit 1 kit BN2007 ™
Spectra Multicolor High Range 2 x 250 μL 26625
NativePAGE™ Cathode Buffer Additive 250 mL BN2002 Protein Ladder
(20X)
Western
NativePAGE™ Sample Buffer (4X) 10 mL BN2003
MagicMark™ XP Western 250 μL LC5602
™
NativePAGE 5% G-250 Sample 0.5 mL BN2004 Protein Standard
Additive
MagicMark™ XP Western 50 μL LC5603
™
NativePAGE Sample Prep Kit 1 kit BN2008 Protein Standard
Appendix
Crossword puzzle challenge
To participate in the crossword puzzle challenge,
go to thermofisher.com/pagecrossword
1 2
6 7
10
11
12 13 14
15
C t d Th T h C tC dM k
A cross Down
5. Can you name one of the scientists who developed 1. Which tank is compatible with >180 mini gels? pg. 52 2
blue native polyacryr lamide gel electro
r phore
r sis? pg. 17 2. Which gel chemistryr minimizes pro r tein degra
r dation? pg. 9
6. Which tank is compatible with midigels? pg. 56 3. Who firs
r t published SDS-PAGE as a method for the
9. Which ladder can be used for accura r te molecular analysis of cleavage of structurar l pro
r teins in
weight estimation direr ctly on western blots? pg. 46 bacteriophage? pg. 7
10. Can you name one of the scientists who filed a 4. Can you name one of the scientists who firs r t
r l-pH Bis-Tris system in 1996? pg. 11
patent for the netura 1 described the theoryr of separa
r tion of amphoteric
12. Which gel has a unique wedge well design that pro r dient in the 1960s? pg. 21
r teins along a pH gra
allows you to load 2x the sample volume? pg. 10 7. What power supply is available for use with the Mini
13. Which pror tein ladder would you use for Gel Tank? pg. 58
r ximate determination of molecular weight? pg. 35
appro 8. What is a fast alternative to tra
r ditional Coomassie
15. Who won the Nobel Prize for analysis of serum staining? pg. 72
pro
r teins by electro
r phorer sis in 1948? pg. 5 11. Which ladder would you use for pre r cise
determination of molecular weight? pg. 35
14. Which type of gel has been re r fere
r nced in >20,000
publications? pg. 12