MODX

BURGOS , MARYEN NICOLE

Name: ________________________________________
M .

May 09 , 2024
Date: ______________________
Restriction Mapping
1. Below is a restriction map for the plasmid pGEN101 (total length = 20 kb). Using this
map as a guide, give the number of restriction fragments along with their associated
lengths that would result from digesting pGEN101 with the restriction enzymes EcoRI,
BamHI, and a combination of EcoRI + BamHI.

6kb
BamHI
BamHI
2kb
pGEN101
BamHI
(20 kb)

4kb
8kb
EcoRI

Digest Performed Size of Fragments Obtained

EcoRI 20 kb
BamHI · 2 kb, 6 kb, 12 kb
EcoRI + BamHI G kb 2 kb, 4 kb, 6 kb, 8 kb kb
,

2. Two freshmen college students performed the following set of restriction digests on a
newly isolated plasmid, pBLA230. The reaction they carried out, along with the
fragments obtained in single and double digest reactions, were:

Digest Performed Size of Fragments Obtained

HpaI 26 kb
HindIII 13 kb, 6 kb, 4 kb, 3 kb
HpaI + HindIII 7 kb, 6 kb (2), 4 kb, 3 kb

Using this information, construct a restriction map of pBLA230.

-
3k HindI
HindI II
b
II 6k
4k b
b pBLA230
HindI 26 kb HpaI
II
6k
b 7k
HindI b
II
 BURGOS , MARYEN NICOLE M
Name: ________________________________________
.

May 09, 2024

Date: ______________________
Restriction Mapping
3. Plasmid pBR607 is a 2.6 kb plasmid containing Ampicillin and Tetracycline resistance
markers, an origin of replication, and unique restriction sites for the restriction
enzymes EcoRI, BamHI, and PstI.

Given the restriction map for pBR607 for the enzymes EcoRI, BamHI, and PstI, show on
the agarose gel picture below where the approximate positions of the restriction
fragments generated from the given restriction digests would be located after carrying
out electrophoresis.
BamHI

0.2 kb

EcoRI
1.94kb pBR607
(2.6 kb)
0.46 kb

PstI

EcoRI,
Size EcoRI & EcoRI & PstI &
Standards PstI BamHI BamHI

4.0 kb

2.2 kb
*
Al 2 4 kb
2.4 kb
.

-
2.14 kb
2 14 kb .

2.0 kb
=>
1.94 kb
94kb
1 .

0.5 kb
M =>
-

0.46 kb
0 . 44 kb 0.4646kb
kb
=>
0.2 kb
0 2 k
.
=
0.2 kb
0 .
2 kb
 BURGOS , MARYEN NICOLE M
May 09 , 2024
.

Name: ________________________________________ Date: ______________________

Restriction Mapping
4. As part of an undergraduate project, a student was attempting to construct a restriction
map for the plasmid pUC23 using the restriction enzymes EcoRI and BamHI. After
carrying out both single and double enzyme digest reactions and electrophoresing each
reaction mix through an aragose gel, the picture below is obtained, showing the number
of DNA fragments produced in each reaction, along with the sizes of each fragment.

From this information, construct a restriction map of the pUC23 for enzymes EcoRI and
BamHI.
EcoRI &
EcoRI BamHI BamHI

20 kb

11 kb

8 kb
6 kb

3 kb 2 bands

BamHI
BamHI 3kb 3kb

20kb
EcoRI

pUC23
6kb 20 kb

8kb
BamHI
 Name: ________________________________________ Date: ______________________
Restriction Mapping
5. A very determined graduate student set out to construct a restriction map for the
plasmid pDA401 (total size = 4.0 kb). The restriction enzymes used were HindIII,
BamHI, and EcoRI. After carrying out the digestions, the resulting DNA fragments were
electrophoresed and sized using a set of DNA size standards. The data obtained in each
digestion are shown below.

From this data, construct a restriction map of pDA401 for the enzymes HindIII, BamHI,
and EcoRI.

Digest Performed Size of Fragments Obtained

HindIII 3.82 kb, 0.18 kb
BamHI 2.35 kb, 1.65 kb
EcoRI 3.00 kb, 1.00 kb
HindIII + BamHI 2.35 kb, 1.20 kb, 0.27 kb, 0.18 kb
HindIII + EcoRI 1.87 kb, 1.00 kb, 0.95 kb, 0.18 kb
BamHI + EcoRI 1.60 kb, 1.40 kb, 0.75 kb, 0.25 kb

Single Digests
BamHI 3.0 kb
2.35 kb
3.82 kb HindIII
4.0 kb 0.18 kb 4.0 kb EcoRI 4.0 kb
HindIII 1.65 kb
1.0 kb
BamHI EcoRI
Double Digests
1.87 kb 1.60 kb
2.35 kb BamHI
0.27 kb
HindIII HindIII BamHI
4.0 kb 0.18 kb EcoRI 4.0 kb 0.18 kb EcoRI 4.0 kb
HindIII HindIII
0.75 kb 1.40 kb
1.20 kb 1.0 kb
0.95 kb
BamHI BamHI
EcoRI EcoRI
0.25 kb
 Name: ________________________________________ Date: ______________________
Restriction Mapping

1.60 kb
Triple Digest

BamHI
0.27 kb
EcoRI pDA401 HindIII
4.0 kb 0.18 kb
HindIII
0.75 kb
0.95 kb

BamHI EcoRI
0.25 kb

6. A circular DNA plasmid, pDA102, has a size of 4.35 kb. When the plasmid DNA digested
with combinations of restriction enzymes and the resulting fragments are
electrophoresed, the following data is obtained.

Using these data, construct a restriction map of plasmid pDA102 for the restriction
enzymes SalI and HhaIII.

Digest Performed Size of Fragments Obtained

SalI 2.30 kb, 0.25 kb, 1.80 kb
HhaIII 2.10 kb, 1.55 kb, 0.70 kb
SalI + HhaIII 1.20 kb, 1.10 kb, 0.75 kb, 0.70 kb, 0.35 kb, 0.25 kb
Single Digest 1.80 kb
HhaIII
0.70 kb

HhaIII
4.35 kb SalI
0.25 kb 4.35 kb
SalI SalI
2.10 kb

1.55 kb
2.30 kb
HhaIII
Name: ________________________________________ Date: ______________________
Restriction Mapping

Double Digest

·
HhaIII
0.70 kb
0.75 kb

HhaIII
SalI
0.35 kb
0.25 kb
SalI SalI

1.20 kb 1.10 kb

HhaIII