Covalent Conjugation of Poly (Ethylene Glycol) To Proteins and Peptides: Strategies and Methods
Covalent Conjugation of Poly (Ethylene Glycol) To Proteins and Peptides: Strategies and Methods
Covalent Conjugation of Poly (Ethylene Glycol) To Proteins and Peptides: Strategies and Methods
Abstract
PEGylation, the covalent linking of PEG chains, has become the leading drug delivery approach for
proteins. This technique initiated its first steps almost 40 years ago, and since then, a variety of methods
and strategies for protein–polymer coupling have been devised. PEGylation can give a number of relevant
advantages to the conjugated protein, such as an important in vivo half-life prolongation, a reduction or
an abolishment of immunogenicity, and a reduction of aggregation. Furthermore, the technique has
demonstrated a great degree of versatility and efficacy – not only PEG–protein conjugates have reached
the commercial marketplace (with nine types of derivatives), but a PEG-aptamer and PEGylated lipo-
somes are now also available. Most of this success is due to the development of several PEGylation
strategies and to the large selection of PEGylating agents presently at hand for researchers. Nevertheless,
this technique still requires a certain level of familiarity and knowledge in order to achieve a positive
outcome for a PEGylation project. To draw general guidelines for conducting PEGylation studies is not
always easy or even possible because such experiments often require case-by-case optimization. On the
other hand, several common methods can be used as starting examples for the development of tailor-
made coupling conditions. Therefore, this chapter aims to provide a basic introduction to a wide range
of PEGylation procedures for those researchers who may not be familiar with this field.
Key words: Poly(ethylene glycol) (PEG), PEGylation, PEG–protein conjugate, Protein modification
1. Introduction
Sonny S. Mark (ed.), Bioconjugation Protocols: Strategies and Methods, Methods in Molecular Biology, vol. 751,
DOI 10.1007/978-1-61779-151-2_8, © Springer Science+Business Media, LLC 2011
95
96 Mero et al.
1.1.1. NMR Spectroscopy To evaluate the degree of activation and to detect the presence of
of PEGylating Agents impurities (4), PEGs can be analyzed by both 1H- and 13C-NMR
spectroscopy (Fig. 1). This technique requires a few milligrams of
polymer and a suitable deuterated solvent such as dimethyl sul-
foxide (DMSO-d6), chloroform (CDCl3), or water (D2O).
Usually, CDCl3 or DMSO are preferred for the analysis of those
activated PEGs that can be hydrolyzed in D2O.
1.1.2. Determination The most utilized PEG for protein modification is methoxy-PEG
of PEG Diol Impurities (mPEG), where only one terminal end of the polymer can be
in Methoxy-PEG Batches activated while the other is capped with a methoxy group, pre-
venting undesired intra- or intermolecular crosslinking (5).
During the synthesis of mPEG, the anionic polymerization of
ethylene oxide initiated by CH3O– eventually contains PEG diol
Covalent Conjugation of Poly(Ethylene Glycol) to Proteins and Peptides 97
1.1.3. Activation Degree The degree of activation of most amino-reactive PEGs can be
of Amino-Reactive determined by using a spectroscopic assay based on the so-called
PEGylating Agents Glycyl-Glycine (Gly-gly) test. In this procedure, the degree of
PEG activation is determined by reacting an equimolar amount
of Gly-Gly with the activated PEG, followed by performing a
Snyder and Sobocinsky colorimetric assay of the unreacted
dipeptide (6). This assay uses 2,4,6-trinitrobenzenesulfonic acid
(TNBS), which reacts stoichiometrically with primary amino
groups in an alkaline medium to give a trinitrophenyl derivative
absorbing at 420 nm (Fig. 2).
Fig. 2. Reaction between 2,4,6-trinitrobenzensulfonic acid and a free primary amine group.
Table 1
Hydrolysis half-lives of PEG-NHS species at pH 8, 25°C
1.1.6. Mass Spectrometric PEG molecular weight determination can be rather difficult
Analyses of PEGylating because of polymer polydispersity. For such determinations,
Agents matrix-assisted laser-desorption ionization (MALDI) mass spec-
trometry (MS) has been the technique most often employed
because it produces mainly monocharged ions, thus generating
mass spectra of low complexity (9–11). The specific operating
conditions will depend upon the particular MALDI-TOF instru-
ment employed, but using an acceleration voltage of 20 kV with
linear detection is a suitable general method. The MALDI-TOF
mass spectrum of a PEG sample typically shows a monomodal
distribution of MW values with the main mass signals spaced apart
by Dm/z = 44, in agreement with the monomer unit mass of
the oxyethylene unit (44.053 g/mol) (Fig. 4) (12). Electrospray
ionization mass spectrometry (ESI-MS), a method widely used
for protein characterization, has a strong tendency to form mul-
tiply charged ions of the samples, thus hampering the analysis of
polydisperse PEG polymers with molecular masses above a few
kilodaltons.
1.1.7. Determination of The impurities found in raw PEG preparations can come from
Reactive, Low-Molecular either the process of synthesis of the polymer or the activation
Weight Impurities in PEG reaction, while others are formed by the degradation of the polymer
Batches (e.g., oxidation) or by cleavage of the chain itself. PEG-aldehyde,
for example, is easily oxidized in air and low-molecular weight
aldehydic impurities can often be found in the raw product.
1.2. Protein PEGylation The PEGylation of proteins can be achieved either by a direct
chemical reaction between an amino acid residue and a suitable
PEGylating reagent, or by an enzyme-catalyzed linkage. Brief
descriptions of several strategies for conjugating PEG molecules
to proteins and peptides are presented below.
1.2.1. Random PEGylation The primary amino groups of proteins are good nucleophiles,
at Free Amino Groups and as such are exploited most frequently for PEG coupling by
reaction in mildly basic media (pH 8.0–9.5). Lysines, com-
monly located on protein surfaces, are relatively abundant and
easily accessible to reactive PEG reagents (e.g., activated PEG-
carboxylates and PEG-carbonates; see Fig. 5a, b). Random
PEGylation at these amino acid residues typically yields mix-
tures of different isomers and different degrees of modifica-
tion. To a lesser extent, such reactive PEGylating agents can
also target other types of nucleophilic groups found in pro-
teins such as the side chains of serine, threonine, tyrosine, and
histidine (14, 15). In this case, it is possible to cleave any
unstable bonds by treating the resultant conjugate mixture
with hydroxylamine, thus improving the homogeneity of the
final PEGylated product (16).
Fig. 5. Coupling of protein amines with activated PEG-carbonates (a1, a2), PEG-carboxylates (b) and PEG-aldehyde (c).
Covalent Conjugation of Poly(Ethylene Glycol) to Proteins and Peptides 101
1.2.2. Protein N-Terminal In order to guarantee a higher degree of homogeneity of the product,
PEGylation it is possible to direct the PEG coupling reaction to take place only
at the N terminus of a protein. This selectivity is possible by taking
advantage of the different pKa values between the e-NH2 of lysine
and the a-NH2 of the N terminus. By lowering the pH of the reac-
tion mixture to ~5–6, all the e-amines in a protein will tend to be
protonated whereas the a-NH2 group will still be partially present
as a free base available for coupling with activated PEG molecules.
This method generally gives optimal results when less reactive
PEG-aldehydes are used. In these reactions, an unstable Schiff
base is initially obtained, which is in turn reduced to a stable
secondary amine (Fig. 5c). Several papers describe the modification
of primary amines with PEG-acetaldehyde and later with the more
stable PEG-propionaldehyde (17, 18). This conjugation method
has been successfully exploited for the preparation of several
PEG–protein conjugates; among these Neulasta®, an N-terminal
mono-PEGylated granulocyte colony-stimulating factor (G-CSF)
has demonstrated therapeutic and marketing success (19).
1.2.3. Thiol PEGylation Cysteine residues are valuable targets for achieving the site-specific
modification of proteins or peptides, and are present in the free
form at a relatively low natural abundance level compared to the
oxidized cystine species. Nevertheless, cysteines – if present – are
often found partially or fully buried within the structure of
proteins with limited accessibility to chemical reagents (20).
Under appropriate conditions, cysteine residues can be modified
selectively, rapidly, quantitatively, and either in a reversible or irre-
versible fashion (21). Furthermore, thanks to its relatively facile
coupling chemistry, there are several examples of the insertion of
cysteines by genetic engineering at desired positions in a protein
sequence for site-specific conjugation (22).
PEG-maleimide (PEG-Mal), PEG-vinyl sulfone (PEG-VS),
or PEG-iodo acetamide (PEG-IA) derivatives have been used to
obtain stable, irreversible thioether bonds between polymers
and proteins (Fig. 6). PEG-orthopyridyl disulfide (PEG-OPSS)
Fig. 6. Thiol-reactive PEGs (a) and conjugation of PEG to a free thiol group (b).
102 Mero et al.
1.2.5. PEGylation Aldehydic and keto groups, absent in natural proteins, can be
of Proteins Modified exploited for certain types of nucleophilic additions. Aldehyde
with Aldehydic and Keto functional groups can usually be introduced into proteins by the
Groups oxidation of an N-terminal threonine or serine residue using
sodium periodate. The introduced aldehydic groups can react
with an aminooxy-functionalized PEG chain to obtain a conjugate
at the N terminus of the protein (Fig. 7). In some cases, when the
N terminus is an amino acid other than threonine or serine, a
similarly reactive group can be introduced by metal-catalyzed
oxidation, although the conditions for this reaction are poten-
tially more damaging to proteins (25).
1.2.7. Amino PEGylation For the selective PEGylation of peptides, a different type of strategy
of Peptides by Reversible involves the reversible protection of specific residues. This proce-
Protection dure is possible for peptides only because they generally contain
just a few nucleophilic groups and are more stable than full-length
proteins toward harsh chemical treatments. This method involves
three steps: (1) protection by suitable reagents of the residues
known to be important for the activity and, eventually, the purifi-
cation of the desired isomers; (2) PEGylation at the level of the
lone unprotected, reactive target residue; and (3) removal of all
the protecting groups. This method is not suitable for proteins
because the harsh methods employed during the protection and/
or deprotection reactions can negatively affect protein integrity.
The protected peptides can be obtained by solid-phase synthesis
or by chemical modification. For example, a somatostatin analogue,
bearing one terminal a-amino group and one lysine residue,
was modified by selective pH-driven tert-butyloxycarbonyl (Boc)
protection of the first amino group, followed by PEGylation of
the second one and deprotection (29). In addition, GRF and
salmon calcitonin, prepared by solid-phase synthesis, were fluore-
nylmethyloxycarbonyl (Fmoc)-protected at the N terminus and
at one of the two internal lysine residues, and then selectively
conjugated to PEG (30, 31).
(acyl donor) and a primary amine (acyl acceptor). The latter can
be selected among a variety of amines, including the e-amino
group of lysine or an appropriate PEG derivative bearing an amino
group (PEG-NH2) (Fig. 8) (32). Among the various prokaryotic
and eukaryotic TGases that have been explored for conjugation
applications, the most widely used enzyme is microbial TGase,
which has a number of advantageous properties over eukaryotic
TGases such as a calcium-independence and lower substrate
specificity requirements. These properties conveniently allow for
the use of TGase as a biochemical reagent on a large scale for
industrial applications. In the area of pharmaceutical biotechnology,
several proteins have been selectively modified by TGase; these
are recombinant human interleukin-2 (IL-2), G-CSF, and human
growth hormone. In these examples, the selective conjugation is
due to the TGase active site structure, which is accessible only to
those glutamines present within flexible regions of the protein
substrate (33).
1.3.1. Ion Exchange When PEG is coupled to a protein’s amino groups, the resulting
Chromatography conjugate may have an isoelectric point (pI) different from that of
the starting native protein. Cation exchange chromatography
(CEX) is the method of choice for the separation of PEGylated
proteins because it exploits differences in charge at the protein
surface (36, 37). Effectively, PEG modifies the elution time of
proteins in ion exchange chromatography (IEX) separations,
either by coupling to the amines or shielding the charges on the
protein surface. Even in those situations where the net charge is
unaltered with respect to the starting protein, the presence of the
PEG moiety may decrease the interaction between the protein
and the chromatographic matrix, thus yielding a shorter elution
time for the PEG–protein conjugate compared to the starting
protein. In the case of CEX separations, the elution order of
PEG–protein conjugates is determined mainly by the number of
linked PEG chains: Highly PEGylated molecules tend to elute
first, followed by less PEGylated isomers and then by the unre-
acted protein (38); and any unreacted PEG that does not present
positive charges elutes in the column void volume.
Given that PEG–proteins tend to interact weakly with IEX
matrices, special consideration must be given to the buffer con-
ductivity and pH conditions. For this reason, it is convenient to
carry out an extensive dialysis of the PEGylation mixture against
the buffer that will be used for the CEX step in order to reach the
same ionic strength (as measured by conductometry) and pH
value of the column equilibration buffer. In addition, the reaction
mixture samples should be diluted and filtered to avoid high
back pressure and column fouling. Occasionally, a double-step
procedure may be suitable, where a first chromatographic step is
performed with a large-particle size resin to eliminate the free
polymer, followed by a second step in which a resin with higher
resolution is employed. The choice of buffers is a very important
step for successfully carrying out IEX separations. Usually the
equilibration buffer (A) has a low ionic strength, whereas the
elution buffer (B) contains a higher concentration of salt (NaCl).
In some cases, a change in pH can be also used between buf-
fers A and B. Small increases in the salt concentration or pH of
the buffer solution can effectively reduce the strength of the
interactions between PEG–proteins and the resin, causing the
conjugates to be eluted from the column before the un-PEGy-
lated proteins. A problem that is commonly encountered in the
purification of PEGylated proteins is the low capacity of the pores
of conventional IEX media; the effective diameter of these
pores can sometimes be too small to allow the penetration of
106 Mero et al.
1.4. PEG-Conjugate The first issue to be faced with the characterization of PEG-
Characterization conjugates deals with the accurate determination of the amount
of attached PEG. Several methods are available such as colori-
metric assays, SEC, electrophoresis, and mass spectrometry (MS).
However, these methods are not suitable for separating and
identifying positional isomers of PEG; for these purposes, IEX is
generally better suited. The identification of PEGylation sites
within proteins is based mainly on the use of standard protein
sequence analysis methods, with peptide mapping and mass
spectrometry both falling within the scope of such types of
useful techniques.
The simplest and most rapid methods available for conducting
preliminary characterizations of a PEG–protein conjugate are
colorimetric assays. In the case of amino-PEGylation products, the
Habeeb assay can be used to quantify the amount of unreacted
protein primary amines with TNBS reagent, thus allowing one to
indirectly calculate the number of bound PEG chains (50). In a
similar approach, Ellman’s assay can be used to determine the
presence of any remaining free cysteines following PEG–thiol
conjugation (51). Finally, the iodine assay, based on the noncova-
lent interaction of iodine with the PEG backbone, can be used to
obtain both qualitative and quantitative information about the
polymer (35). The preceding methods are all described in detail
in the following sections.
To characterize the protein conformation in the conjugates,
various spectroscopic methods may be used. In particular, circular
dichroism, fluorescence, and UV spectra can all be applied to
analyze PEG–protein conjugates – thanks to the fact that PEG is
transparent to light at UV–visible wavelengths. For the interpre-
tation of such spectra, the reader is referred to dedicated books
on protein characterization (52).
1.4.1. Bicinchoninic Acid The protein concentration in a non-PEGylated sample can usu-
Assay ally be determined by simply measuring the spectrophotometric
absorbance of the aromatic amino acids residues at l = 280 nm.
This approach may also be acceptable for measuring the concen-
tration of a PEG–protein conjugate sample after first confirming
that the absorbance of the protein is not altered by PEG coupling.
Alternatively, a colorimetric assay can be carried out to estimate
the protein concentration. The bicinchoninic acid (BCA) assay,
for example, is the most commonly used technique because it is
less affected than other types of dye-binding assays by the presence
of PEG. BCA protein assay kits are commercially available from
a number of different suppliers (e.g., Sigma-Aldrich, Bio-Rad,
Covalent Conjugation of Poly(Ethylene Glycol) to Proteins and Peptides 109
1.4.2. Ion Exchange IEX, as previously discussed in Subheading 1.3.1, is the most
Chromatography widely used technique for the fractionation and purification of
PEGylated proteins on a preparative scale. IEX is also very useful
for analytical purposes because it allows the efficient separation of
positional isomers (54). In particular, our laboratory has found
that analytical strong cation exchange columns (e.g., TSKgel
SP-5PW, 7.5 mm × 7.5 cm (Tosoh); and HiLoad™ 16/10 SP
Sepharose™ HP (GE Healthcare)) can provide good results for
PEGylated samples.
1.4.4. Size-Exclusion SEC, or gel filtration, is widely used to estimate the molecular
Chromatography weight (MW) of native (unmodified) proteins through the use of
a standard calibration curve. As PEGylated proteins show a larger
hydrodynamic volume than native proteins of the same nominal
MW, SEC (and, similarly, sodium dodecyl sulfate polyacrylamide
gel electrophoresis (SDS-PAGE)) cannot provide an accurate
determination of the exact MW of PEG–protein conjugates, but
can only be used to monitor a PEGylation reaction and character-
ize the homogeneity of the conjugate product. An interesting and
useful discussion on the effect of PEG on the apparent size of
conjugates and their behavior in SEC has recently appeared in the
literature (57).
110 Mero et al.
1.4.5. Sodium Dodecyl SDS-PAGE is a highly useful technique for determining the purity
Sulfate Polyacrylamide and molecular weight (MW) of native (unmodified) protein
Gel Electrophoresis samples. However, SDS-PAGE is not suitable as a direct method
to easily evaluate the MW of PEGylated proteins because proper
calibration standards are typically unavailable for such analyses.
During electrophoresis, the migration rate of PEG-conjugates
through the porous gel matrix is significantly slowed by the long
and heavily hydrated PEG chains. Consequently, PEGylated
proteins usually display apparent MW values on SDS-gels that do
not correlate with that of the free protein MW standards (54).
Generally, SDS-PAGE can only be used to qualitatively follow the
progress of a PEGylation reaction and the subsequent purifica-
tion procedures. For example, a significant shift in the SDS-PAGE
band position for a protein after PEGylation would provide
evidence in support of a success PEGylation experiment. Random
multi-PEGylation will typically yield several bands on an SDS-
PAGE gel, with each band migrating slower than that corre-
sponding to the native protein; on the contrary, only a single new
band should be expected to appear for monoPEGylated deriva-
tives. In some cases, using PEG molecules of different MWs
instead of native protein standards may enable a rough estimation
of the apparent MW of the conjugates (58, 59); however, it is
then necessary to use a specific iodine staining procedure to reveal
the PEG bands since PEG is negative toward conventional
protein stains. SDS-PAGE gels of varying degrees of crosslinking
Covalent Conjugation of Poly(Ethylene Glycol) to Proteins and Peptides 111
1.4.6. Mass Spectrometry To evaluate the molecular weight of PEGylated proteins, mass
of Conjugates spectrometry (MS) analyses are highly recommended. Typically,
MALDI-MS is employed for such determinations, even if these
types of spectra are sometimes complicated by PEG polydisper-
sity. For PEGylated proteins, the total MW is easily calculated as
the sum of the MW of the native protein and the MW of the conju-
gated PEG chains (60). Nevertheless, the MS technique does
present a few limits, such as (1) poor ionization efficiency with
large polymers, which can affect the detection sensitivity as well as
the accurate determination of the average MW and (2) degrada-
tion of the proteins during sample extraction and evaporation.
1.4.7. General Method The method used for the localization of the sites of PEG conjuga-
for Determination tion follows the strategy commonly employed for conventional
of PEGylation Sites protein sequence determinations. This approach is based on the
for Proteins Modified proteolytic digestion of the native (unmodified) protein and the
with Polydisperse PEGs conjugated protein, followed by a comparison of the two elution
patterns obtained by RP-HPLC. Subsequent analysis of each
peak in the RP-HPLC fingerprint by ESI-MS or MALDI-MS
allows the determination of peptide composition (61, 62) and the
site of amino acid PEGylation. The determination is carried out
by comparison of the fingerprint of the native protein and that of
the conjugate. The peptides that are missing in the conjugate
elution pattern represent those sequences that contain the poly-
mer. Typically, trypsin is the most commonly employed prote-
olytic enzyme; however, other proteolytic enzymes with different
digestion specificities may also be used depending on the sequence
of the protein under investigation. This is necessary in those cases
where the PEGylated peptide fragments contain more than one
potential site of PEGylation.
2. Materials
2.2. Protein PEGylation 1. Glycine solution: Use 200 mL of glycine (250 mM) in water,
pH 7.4 for each milliliter of the reaction mixture.
2. NaCNBH3 solution: Prepare 20 mM NaCNBH3 in the same
buffer as that used in the reaction mixture.
3. Hydroxylamine solution: Prepare 2 mL NH2OH, pH 7.3 in
water.
2.4. Conjugate 1. BCA Protein Assay Kit (Pierce): To prepare the BCA working
Characterization solution, mix 50 parts of reagent A (containing sodium car-
bonate, sodium bicarbonate, BCA, and sodium tartrate in
0.1 M sodium hydroxide) with one part of reagent B (con-
taining 4% CuSO4·5H2O) according to the manufacturer’s
instructions.
2. BaCl2 solution: 5% (w/v) barium chloride in 1N HCl.
3. Iodine solution: Dissolve 1.27 g of I2 in 100 mL of 2% (w/v)
KI in water.
4. Phosphate buffer: 20 mM phosphate buffer, pH 7.2.
5. Bicarbonate buffer: 4% (w/v) NaHCO3 buffer, pH 8.5.
6. Tris-Gdn buffer: 6 M guanidine hydrochloride, 50 mM Tris–
HCl, pH 9.0.
7. PepClean™ C-18 spin columns (Pierce, Rockford, IL).
3. Methods
3.1. Characterization 1. Dissolve the PEG sample (10–20 mg) (see Note 1) in 0.75 mL
of PEGylating Agents of deuterated solvent and perform the NMR analysis according
to the instrument manufacturer’s instructions.
3.1.1. NMR Spectroscopy
of PEGylating Agents In the 1H NMR spectrum, the integral values of the reactive
group signals can be compared with the integral values of the
backbone chain signals (–CH2–CH2–; e.g., PEG 5 kDa, 3.6 ppm,
491H) or with other characteristic signals of the polymer. For
example, Fig. 1 shows the NMR spectrum of commercial Boc-
PEG-NHS (5 kDa), where the H signals of the Boc group
(–C(CH3)3, 1.4 ppm, 9H) are compared with those arising from
the N-hydroxysuccinimide group (–NHS) (–CH2–CH2, 1.2 ppm,
4H) and the backbone chain signals. In this case, the analysis of
the integrals indicates that the polymer is activated with NHS at
only 60% of the maximum level, since the signal integration value
is 2.4 instead of the expected value of 4.
3.1.2. Analysis of PEG Diol 1. Equip an HPLC system with a suitable SEC column (see
Content in mPEG Batches Subheading 1.4.4 for a discussion on column selection).
Equilibrate the column with the desired elution buffer.
2. Solubilize the PEG sample (0.2 mM) in 1 mL of elution
buffer.
3. Load 20 mL of the sample solution onto the SEC column.
4. PEG does not absorb at wavelengths suitable for UV–visible
detection and can be revealed by employing a refractive index
detector, instead.
114 Mero et al.
Table 2
Preparation of test solutions for the TNBS assay
Table 3
Preparation of test solutions for Ellman’s assay
3.1.6. Mass Spectrometric 1. Dissolve PEG (20 mg) in 0.1% (v/v) TFA in water (5–10 mL).
Analyses of PEGylating 2. Mix one volume of saturated matrix solution with one volume
Agents of the PEG solution.
3. Load the matrix/PEG mixture (10–20 mL) onto the MALDI
sample plate and perform the MS analysis according to the
instrument manufacturer’s instructions.
3.2. Protein PEGylation 1. Prepare the protein solution (1–5 mg/mL) in 0.1 M borate
buffer, pH 8.0–9.0.
3.2.1. Random PEGylation
at Free Amino Groups 2. Determine the exact concentration of the protein by UV
of a Protein absorption using its molar extinction coefficient (66).
3. Add the amino-reactive PEG – in small amounts – to the protein
solution under gentle stirring. An excess of activated PEG is
usually required. The optimum ratio of PEG to each protein
amino group may range from 1 to 10, depending on the
particular PEG and the reactivity of the amino groups on
the protein. Table 4 lists some examples of protein conjuga-
tion experiments that have reported in the literature using
different ratios of PEG/protein, PEGs with different MWs
and different protein concentrations.
4. Incubate the reaction mixture at room temperature for 1–5 h.
5. Quench the reaction with glycine solution and stir for 1 h.
6. Eventually add 1 mL of hydroxylamine solution and stir for
30 min.
Table 4
PEGylation reaction conditions and yields as reported in the literature
for different molar ratios of NHS-activated PEG to protein NH2 groups
Protein
Reaction concentration Protein MW PEG MW PEG/protein
conditions (mg/mL) (kDa) (kDa) molar ratio Yield (%) References
3.2.4. PEGylation at Protein 1. Prepare a protein solution at 1–5 mg/mL in 0.1 M phos-
Carboxylic Groups phate buffer, pH 4.0–5.0 (see Note 5);
2. Add 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide (2–5 eq.
with respect to the amount of protein carboxylic acid groups)
and PEG-hydrazide (10–50 eq. with respect to the amount of
protein molecules).
118 Mero et al.
3.2.6. Selective PEGylation 1. Dissolve the peptide (2 mg/mL) in a suitable mixture of H2O
of Peptides in Structuring and a water-miscible organic solvent (e.g., H2O/DMF, 2:3
or Denaturing Media v/v; or H2O/TFE, 1:1 v/v);
2. Bring the pH of the peptide solution to 9–10.
3. Add PEG-NHS (1–3 eq. with respect to the peptide) to the
peptide solution.
4. Incubate the reaction mixture for 30 min under gentle stirring.
5. Quench the reaction mixture with glycine solution and con-
tinue stirring for 1 h.
6. Purify the PEG–protein conjugates as described in
Subheading 3.3, and characterize the products as described in
Subheading 3.4.
3.2.7. Amino PEGylation 1. Protect the most reactive amine groups of the peptide with a
of Peptides by Reversible suitable procedure (e.g., using t-Boc or Fmoc groups);
Protection 2. Purify the desired products by chromatography (e.g., RP-HPLC).
3. Dissolve the protected peptide in DMF, DMSO, or other sol-
vent at a final concentration of 5–10 mg/mL.
4. Add an activated amino-reactive PEG at an excess of 2–10 eq.
over the peptide.
5. Incubate the reaction mixture at room temperature for 4 h
under gentle stirring.
6. Quench the reaction with glycine solution and continue stir-
ring for 1 h.
Covalent Conjugation of Poly(Ethylene Glycol) to Proteins and Peptides 119
3.3. Conjugate After quenching the PEGylation reaction mixture, dialysis is typi-
Purification cally performed using regenerated cellulose membranes against
buffers with low ionic strength at 4°C (see Note 6) for 2 days with
continuous stirring. As an alternative to dialysis, ultrafiltration/dia-
filtration can also be used to exchange the buffer components of
the reaction. For both procedures, it is always important to verify
that the protein remains stable during all the processing steps. After
dialysis or ultrafiltration/diafiltration, the removal of unreacted
PEG, unreacted protein, and the separation of the different
PEGylated species can be achieved by using several different chro-
matographic techniques, as described in the following sections.
3.3.2. Cationic Exchange 1. Equilibrate a cation ion exchange column with CEX-buffer A
Chromatography (see Note 7) according to the manufacturer’s instructions.
For a TSKgel SP-5PW column (21.5 mm × 15 cm, 10 mm), it
is recommended to use a flow rate of 5–8 mL/min.
2. Load the dialyzed reaction mixture onto the column.
3. Elute the PEGylated products by slowly increasing the elu-
tion gradient with CEX-buffer B.
4. Analyze the eluted fractions for the presence of PEG by per-
forming an iodine assay, and for the presence of protein by
monitoring the UV absorption. Collect and pool the frac-
tions containing the PEGylated products.
5. Concentrate and exchange the buffer against CEX-buffer A.
Keep the solution at 4°C for short-term storage or at −20°C
for long-term storage (see Note 8).
3.3.3. Reversed Phase 1. Connect C4 (or C18) RP-HPLC column to the HPLC system.
HPLC 2. Equilibrate the C4 column (250 × 21.1 mm, 10 mm) with
RP-buffer A at a flow rate of 8 mL/min.
3. A column temperature of ~45°C is recommended for run-
ning the RP-HPLC procedure.
4. Load the dialyzed reaction mixture onto the column at
5–10 mg/mL (total protein concentration).
5. Elute the column initially with RP-buffer A.
6. Continue the elution using a moderately shallow gradient
(1–2% per min) with RP-buffer B (see Note 9).
7. Collect and pool the fractions containing protein (as detected
by monitoring the UV absorbance). Check for the presence
of PEG by performing an iodine assay.
8. Concentrate and exchange the buffer against an appropriate
saline solution and keep at 4°C for short-term storage or
−20°C for long-term storage (see Note 8).
3.4.2. Ion Exchange 1. Pre-equilibrate the column (7.5 × 75 cm, 5-mm particle size)
Chromatography with CEX-buffer A at a flow rate of 1 mL/min.
2. Load 200 mL of the PEG–protein conjugates (1 mg/mL
protein) dissolved in CEX-buffer A.
3. Elute the products with CEX-buffer B using a shallow elution
gradient.
4. Analyze the eluate with a UV–visible or fluorescence detector
at a suitable wavelength.
5. In case further analysis of the samples is desired (e.g., SDS
electrophoresis, mass spectrometry), collect the fractions
containing the conjugate and use dialysis or ultrafiltration to
change the buffer.
6. Lyophilize the conjugate products and store at −20°C until
use (see Note 8).
3.4.4. Size-Exclusion 1. Equilibrate the size-exclusion column and the refractive index
Chromatography (RI) detector with elution buffer for 1 h at a flow rate of
1 mL/min.
2. Load 20 mL of the PEG–protein conjugates (0.1–0.5 mg/
mL protein).
3. Elute the product with the same elution buffer used to equili-
brate the column in Step 1.
4. To analyze the eluate, the system can be connected to two
channels: a UV–visible or fluorescence detector and a RI
detector.
3.4.6. Mass Spectrometry 1. Dissolve the PEG–protein conjugate sample (20 mg) in a 0.1%
of PEG–Protein Conjugates (v/v) TFA aqueous solution (5–10 mL).
2. Mix a saturated matrix solution with the PEG–protein sample
solution in the ratio of 1:1 (v/v).
3. Load the mixture (10–20 mL) onto the sample plate and
perform the MS analysis procedure after solvent evaporation.
3.4.8. Determination Follow Steps 1–6 in Subheading 3.4.7 above, and then continue
of PEGylation Sites with the following procedure:
for Proteins Modified
1. Desalt the native and PEGylated protein digestion mixtures
with a Monodisperse PEG
using a PepClean™ C-18 spin column and analyze the prod-
ucts directly by ESI-MS.
2. For both the native protein and PEGylated protein samples,
identify all the resulting peptide fragments. Some of the pep-
tides obtained in the PEGylated sample may show an increase
in mass corresponding to the conjugation of a single chain of
polymer.
3. If more than one available site for conjugation is present
within the same fragment, a tandem mass spectrometry (MS/
MS) analysis is performed to determine which particular
amino acid is modified.
3.4.9. Degree of Protein 1. Prepare the native (unmodified) protein sample and the
Modification by the Habeeb PEGylated derivative at the same protein concentration (0.2–
Assay 0.8 mg/mL) in phosphate buffer, pH 7.2.
2. Prepare the TNBS reagent and perform the assay in test tubes
(in duplicate) at room temperature according to Table 5.
3. Incubate all the samples in a water bath at 40°C for 2 h, and
then add 250 mL of 10% (w/v) SDS and 125 mL of 1N HCl.
4. Read the absorbance of the solution at l = 335 nm using a
spectrophotometer.
124 Mero et al.
Table 5
Preparation of test solutions for the Habeeb assay
Table 6
Preparation of test solutions for the indirect Ellman’s assay
3.4.10. Degree of Cysteine 1. Prepare the native (unmodified) protein sample and the
Modification by the Indirect PEGylated derivative at the same protein concentration
Ellman’s Assay (0.2–0.8 mg/mL) in phosphate buffer, pH 7.2.
2. Prepare the Ellman’s reagent and perform the assay in test
tubes (in duplicate) at room temperature according to
Table 6.
3. Incubate all the samples for 15 min.
4. Read the absorbance at l = 412 nm using a
spectrophotometer.
The percentage of free SH groups is calculated by applying
the following formula:
% Free thiol groups = [(AP - AB)/(AN - AB)] ´ 100
Table 7
Preparation of test solutions for the iodine assay
Blank Sample
3.4.11. Qualitative Test A rapid, qualitative analysis of the total PEG content in a sample
for the Presence of PEG can be performed as follows:
by the Iodine Assay
1. To a clean tube, add 975 mL of deionized water, 250 mL of
BaCl2 solution, and 250 mL of iodine solution.
2. To the above mixture, add 25 mL of the PEG–protein conju-
gate sample solution.
3. The test is positive if the final mixture forms a dark precipi-
tate, or if it shows increased absorbance at l = 535 nm.
3.4.12. Quantitative Test A quantitative analysis of the total PEG content in a sample can
for the Amount of PEG be performed as follows (see Note 11):
by the Iodine Assay
1. Prepare the blank, PEG standard solutions (0.2–0.5 mg/
mL PEG) and unknown sample solutions according to
Table 7.
2. Incubate the solutions for 15 min and then read the absor-
bance at l = 535 nm.
3. Generate a calibration curve by plotting the measured absor-
bance values (535 nm) versus the known concentration val-
ues of the PEG standards.
4. The amount of PEG present in the unknown sample solu-
tions can be determined from comparison of the measured
absorbance values against the standard curve generated in
Step 3.
4. Notes
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Covalent Conjugation of Poly(Ethylene Glycol) to Proteins and Peptides 129