Drug Targets

Four major drug targets:

Exceptions: Colchicin (acts on tubulin), Cyclosporin (acts via immunophillins), etc.

BIMM118
 Drug Targets
BIMM118
 Drug Targets
BIMM118
 Drug Targets: Receptors

Responses to the extracellular environment involve cell membrane or

intracellular receptors whose engagement modulates cellular components
that generate, amplify, coordinate and terminate postreceptor signaling via
(cytoplasmic) second messengers.

Transmembrane signaling is accomplished by only a few mechanisms:

– Transmembrane ion channels: open or close upon binding of a ligand or upon
membrane depolarization
– G-protein-coupled receptors: Transmembrane receptor protein that stimulates
a GTP-binding signal transducer protein (G-protein) which in turn generates an
intracellular second messenger
– Nuclear receptors: Lipid soluble ligand that crosses the cell membrane and acts
on an intracellular receptor
– Kinase-linked receptors: Transmembrane receptor proteins with intrinsic or
associated kinase activity which is allosterically regulated by a ligand that binds to
the receptor’s extracellular domain
BIMM118
 Drug Targets: Receptors
BIMM118
 Receptors
• Rapidly acting (milliseconds) transmembrane ion channels: Multi-unit complexes
with central aqueous channel. Upon binding of a ligand, channel opening allows a
specific ion travel down its concentration gradient ==>
Transient cell membrane depolarization (post synaptic potential)
• Example: Nicotinic acetylcholine receptor: Pentameric structure (two alpha chains, one each
beta, gamma, and delta chain). Activation occurs by binding of two molecules ACh to the alpha
subunits, triggering the opening of the channel for Na+ and K+ ions.
Myasthenia gravis: Autoimmune disease caused by inactivating antibodies against NAchR
BIMM118
 Receptors

Many other types of transmembrane ion channels ==>

Ion channels are common drug targets!
• Voltage-gated channels:
• Gating: controlled by membrane polarization/depolarization
• Selectivity: Na+, K+ or Ca+ ions

• Intracellular ligand-gated channels:

• Ca+ controlled K+ channel
• ATP-sensitive K+ channel
• IP3-operated Ca+ channel (in the ER membrane)
BIMM118
 Calcium as Second Messenger
Ca++ ==> very important in regulating cellular and physiological responses
– Extracellular concentrations are 2 mM (EM, blood), and levels in cytoplasmic vesicles and the
ER can reach up to 10mM.
– Baseline cytosolic Ca2+ concentration is around 100 nM in resting cells.

Conc in mM ECF ICF

K+ 4.5 160
Na+ 144 7
Cl- 114 7
Ca++ 2.2 0.0001

– High gradient makes this a very fast and sensitive signaling system: only slight changes in
membrane permeability will result in dramatic changes in the concentration of [Ca2+]i.
– Low level of [Ca2+]i is also necessary to facilitate a phosphate oriented cellular metabolism
(high calcium and high phosphate concentrations are incompatible!!)
==> Evolutionary challenge: Maintain calcium gradient !!!
– Evolvement of proteins that bind Ca2+ with high affinity, but reject magnesium!

– Two classes of Ca-binding proteins:

• membrane-integrated (unlimited capacity --> transporter systems: Ca-channels, calcium pumps)
• non-membranous (limited capacity --> not only buffering, but processing of signal through
conformational changes that enable interaction with target proteins: Calmodulin, Troponin C ...)
BIMM118
 Calcium as Second Messenger
Sources of Ca++:
• Extracellular compartment: (predominantly in nerve, cardiac and smooth muscle cells)
Three types of plasma-membrane localized calcium channels:

– Voltage operated calcium channels:

Action potental depolarizes plasma membrane, which results in the opening of “voltage”
dependent calcium channels (channels can be opened by increase in extracellular K+).

Each channel protein has four homologous domains, each containing six membrane spanning
α-helices (the fourth one functions as the “voltage” sensor.
BIMM118
 Calcium as Second Messenger
Three types:
Type Properties Location/Function Blockers
Plasma membrane of many cells;
High activation threshold; Dihydropyridines;
L slow inactivation
main Ca++ source for contraction in
verapamil; diltiazem
smooth and cardiac muscle
Low activation threshold; Main Ca++ source for transmitter ω-Conotoxin
N slow inactivation release by nerve terminals (snail venom)
Widely distributed; important in
Low activation threshold; Mibefradil; (verapamil;
T fast inactivation
cardiac pacemaker and Purkinje
diltiazem)
cells

– Ligand gated calcium channels:

Calcium channels opened after ligand binding to the receptor (e.g. glutamate/NMDA receptor;
ATP receptor; nicotinic ACh receptors ( muscarinic ACh receptors signal through G-Proteins
--> slower), prostaglandin receptors

– Store operated calcium channels:

Activated by emptying of intracellular stores, exact mechanism unknown
BIMM118
 Calcium as Second Messenger
Intracellular compartment: (predominantly in muscle cells)
– Calcium stored in mM concentrations in endo/sarcoplasmatic reticulum bound to Calsequestrin .
(Previously mitochondria were thought to play an important role as Ca++-stores, but the uptake rate
is 10x lower than that of the ER/SR -> not useful)

Calcium release from the ER/SR is regulated by two receptors in the ER/SR membrane:
– Ryanodine receptors (RyR):
• Named after sensitivity to Ryanodine: plant alkaloid, irreversible inhibitor
• Very important in skeletal muscle: direct coupling of RyRs with the dihydropyridine receptors of the T-tubules
(dihydropyridine receptors are closely related to the L-type Ca++ channels) (see Ca++ effects)
• Activity of RyRs in non-muscle cell lacking T-tubules regulated by cyclic ADP ribose
• Caffeine: reversible activator of RYRs

– IP3- Receptors (IP3R):

• Inositol-1,4,5-triphosphate is produced through the
activity of receptor activated phospholipases C -->
diffuses through cytoplasm and binds IP3R
BIMM118
 Calcium as Second Messenger
Removal of Ca++ :
• Ca++ - pumps:
Activity of these pumps is induced by increases in cytosolic calcium.

– Plasma membrane Na+/Ca2+ exchanger (mainly in excitable cells, e.g. cardiac cells)
three Na+- ions are exchanged for one Ca++-ion
Digitalis alkaloids: Na+/ K+-ATPase inhibitors => intracellular Na+ raises => Na+/Ca2+ exchange less efficient =>
Ca2+ intracellular increases => stronger contractions

– Plasma membrane Ca2+-ATPase (PMCA)

two Ca++- ions are transported per ATP molecule hydrolyzed; regulated by CaM, PKA or PKC

– SR/ER Ca++-ATPase (SERCA):

80% (!) of integral membrane protein of SR
target of thapsigargin ( => Ca++-release from intracellular stores)

• Ca++ - buffers:
Low affinity (!) but high capacity (50-100 Ca++-ions/molecule)
– Calsequestrin (very acidic, 37% of amino acids are aspartic and glutamic acid),
– Calreticulin, Parvalbumin
BIMM118
 Calcium as Second Messenger
Ca++ Sensors:
• Annexins:
Family of proteins w/ common feature that they interact w/ membranes in a Ca++- dependent manner.
Low affinity for Ca++-ions restricts action to membrane proximity (high local Ca++ conc.!);
implicated in the regulation of PLA2, cytoskeletal (re)organization and vesicle movement

• EF-hand proteins:
named after the shape created by the E and F α-helices of the Ca++-binding domain; high affinity
BIMM118
 Calcium as Second Messenger
– Calmodulin:
ubiquitous expression; binds 4 Ca++-ions; acts through stimulation of either protein kinases
(CaMKs)
or protein phosphatases (Calcineurin); also activates cAMP phosphodiesterase

– Troponin C:
restricted expression, regulates contraction of skeletal and heart muscle
BIMM118
 Calcium as Second Messenger
BIMM118
 Calcium as Second Messenger
Function of cytoplasmic free Ca++:
• Muscle contraction:
– Skeletal and cardiac muscle:
• Contraction (=actin-myosin interaction) controlled by proteins on actin filaments (tropomyosin w/ troponin)
• Troponin I inhibits formation of cross-bridges between actin and myosin => muscle relaxed.
• Troponin C combines with Ca2+-ions and blocks the action of Troponin I => muscle contracted
BIMM118
 Calcium as Second Messenger
– Smooth muscle:
Contraction controlled by proteins acting either on actin....
• NO Troponin=>regulation occurs through the CaM binding Caldesmon :
Low [Ca++]: Caldesmon forms complex with actin and tropomyosin => access of myosin to actin restricted
=>muscle relaxed.

… or on myosin
• Myosin light chains inhibit actin-myosin interaction:
phosphorylation of myosin light chain (MLC) by MLC kinase (MLCK) relieves this inhibition =>
phosphorylated myosin is able to interact w/ actin => contraction
BIMM118
 Calcium as Second Messenger
• Neuronal excitibility and secretion:
– Increase of [Ca++] induces fusion of the synaptic vesicles with the plasma mambrane =>
this causes exocytosis of neuro-transmitters into the synaptic cleft.
BIMM118
 Calcium as Second Messenger
• Immune response:
– TCR stimulation => [Ca++] increases => activates Calcineurin => dephosphorylates NFATc on
ser/thr => NFATc translocates to nucleus where it combines with NFATn and induces transcription
of IL-2 gene => T cell proliferation
Calcineurin: target of immunesuppressive drugs FK506 and ciclosporin, which form a complex with
immunophillins and compete with Ca++/CaM for binding to calcineurin => no NFATc activation
BIMM118
 G-Protein-coupled Receptors
GPCR: Large family of receptors with a probable common evolutionary precursor. Transmembrane protein
that is serpentine in shape, crossing the lipid bilayer seven times.

G-Proteins:
– Guanine nucleotide binding proteins:
participate in reversible, GTP-mediated interactions.

– Common features:
• bind GDP and GTP with high affinity, but adopt different structure depending on the bound nucleotide.
• GTP-bound complex has high affinity for other proteins (“acceptor’), affecting their enzymatic activity
• possess intrinsic GTPase activity that is usually activated by interaction with regulatory proteins (e.g. GAPs)
• covalent attachment of various lipids (myristoylation, palmitoylation,...) is responsible for membrane targeting

– Additional control exerted through:

• GTPase Activating Proteins (GAPs): function on small GTP binding proteins
• Guanine-nucleotide Exchange Factors (GEFs): promote GDP release
• Regulators of G-protein Signaling (RGSs): similar to GAPs, but act on heterotrimeric G-Proteins
BIMM118
 G-Protein-coupled Receptors
G-Proteins:
Two major groups:
• “Small GTP binding proteins” (act downstream of receptor: ras, rac etc.) => see growth factor
receptor signaling
• “Heterotrimeric G-proteins” (directly coupled to receptor and enzyme):
• Coupled to 7 transmembrane spanning receptors: (β-adrenergic R, PG-R)
• All members are heterotrimeric, consisting of α, β and γ subunits
BIMM118
 G-Protein-coupled Receptors
α, β and γ subunits:
α-subunit (23 isoforms): contains the GTP/GDP binding site, is responsible for identity
β (5 isoforms) and γ (12 isoforms) subunits: are identical or very similar; interchangeable in vitro;
most of them are ubiquitiously expressed; membrane anchored through prenylation of Gβ

– Gq and
– Golf (expressed only in olfactory cells) are coupled to PLCβ
– GT (=Transducin) is coupled to a cGMP phosphodiesterase and is expressed only in the rod cells of the
retina (these cells are INactivated by light!). Photons hit Rhodopsin => activated opsin is generated =>
facilitates GTP loading of GT => activates cGMP phosphodiesterase => cGMP (keeps Na+ and Ca2+
channels open to cause membrane depolarization => neuro-transmitter release) converted to 5’GMP
(inactive => channels closed) => membrane polarization => NO neurotransmitter release)
BIMM118
 G-Protein-coupled Receptors
Main targets:
Phospholipase Cβ:
see Lipid and Inositol Signaling

Adenylate cyclase:
• Two repeats of six transmembrane α-helices and two catalytic domains that convert ATP into cAMP
• Activated or inhibited by G-proteins (a brain specific isoform is also activated through activated CaM):
GTP-bound Gαs activates AC, GTP-bound Gαi inhibits activity (Forskolin: direct activator of AC => cAMP⇑)
BIMM118
 G-Protein-coupled Receptors
Cholera-toxin: causes ADP-ribosylation of Gsα => release of GTP inhibited => Gsα trapped in active form. cAMP
regulates secretion of fluid into the intestinum => enormous loss of liquid and electrolytes => death!

Pertussis-toxin: causes ADP-ribosylation of Giα, release of GDP inhibited => Giα locked in its INactive form => can not
inhibit AC!
BIMM118
 Cyclic Nucleotides

Targets of cAMP:

Protein Kinase A (PKA):

– Consists of four subunits: two regulatory
and two catalytic subunits => after cAMP
binding to the regulatory subunits the
catalytic subunits dissociate and
translocate to the target substrates.

– First identified process regulated by PKA

was glycogenolysis (PKA phosphorylates
glycogen phosphorylase kinase which in
turn activates glycogen phosphorylase.
PKA also phosphorylates and inactivates
glycogen synthase => release of glucose)
BIMM118
 Cyclic Nucleotides

– PKA also phosphorylates transcription factors: CREB

• CRE (cAMP response element) in the promoter of cAMP responsive genes
• CREB becomes phosphorylated by PKA that translocated to the nucleus
BIMM118
 Cyclic Nucleotides
• Guanylate Cyclase:
– Yields cyclic GMP
– Second messenger in only a few cell types (intestinal mucosa, vascular smooth
muscle)
– cGMP stimulates cGMP-dependent protein kinases
– Action terminated by hydrolysis of cGMP and dephosphorylation of protein kinase
substrates
– Nitric Oxide activates cytoplasmic guanylyl cyclase:
BIMM118
 Cyclic Nucleotides
Phosphodiesterases:
• Attenuate G-protein/AC coupled-receptor derived signals by converting cAMP to 5’AMP,
or cGMP to 5’GMP
• several families; activation creates feed-back loops

• Phosphodiesterase inhibitors:
Methylxanthines:
Caffeine, theophylline =>
enhance and prolong the signals
originating from adrenergic receptors

Sildenafil (Viagra®):
Specific PDE V inhibitor
BIMM118
 Regulation of Receptors

• Receptors not only initiate regulation of physiological and

biochemical function but are themselves subject to many regulatory
and homeostatic controls.
• Controls include regulation of synthesis and degradation of the
receptor by multiple mechanisms; covalent modification,
association with other regulatory proteins, and/or relocalization
within the cell.
• Modulating inputs may come from other receptors, directly or
indirectly.
• Receptors are always subject to feedback regulation by their own
signaling outputs.
BIMM118
 Regulation of Receptors

• Heterologous desensitization:
– Four residues in the cytosolic domain of the β-adrenergic receptor
can be phosphorylated by PKA
– Activity of all Gs protein – coupled receptors, not just the β-
adrenergic receptor, is reduced

• Homologous desensitization:
– Other residues in the cytosolic domain of the β-adrenergic
receptor are phosphorylated by the receptor-specific β-adrenergic
receptor kinase (BARK)
– BARK only phosphorylates the β-adrenergic receptor which
facilitates β-arrestin binding to the phosphorylated receptor
BIMM118
 Receptor Desensitization
BIMM118
 Receptor Down-Regulation

• Slower onset (hours to days), more prolonged effect

• Decreased synthesis of receptor proteins
• Increase in receptor internalization and degradation
• Internalization involves endocytosis of receptor: the endocytic vesicle
may ultimately return the receptor to the cell surface, or alternatively
may deliver the receptor to a lysosome for destruction.
• Endocytic vesicles are associated with phosphatases which can clear
phosphate from a receptor and ready it for reuse before returning it to
the plasma membrane.
BIMM118
 Nuclear Receptors

• Lipid soluble ligands that penetrate cell membrane (corticosteroids,

mineralocorticoids, sex steroids, Vitamin D, thyroid hormone)
• Receptors contain DNA-binding domains and act as ligand-regulated
transcriptional activators or suppressors(=> characteristic lag period of 30
minutes to several hours):
Ligand binding of the receptors triggers the formation of a dimeric complex that can interact with
specific DNA sequences (=“Response Elements”) to induce transcription. The resulting protein
products possess half-lifes that are significantly longer than those of other signaling
intermediates => Effects of nuclear receptor agonists can persist for hours or days after plasma
concentration is zero.
BIMM118
 Nuclear Receptors

• Examples:
– Glucocorticoids: Inhibit transcription of COX-2; induce transcription of Lipocortin
– Mineralcorticoids: Regulate expression of proteins involved in renal function
– Retinoids (Vit A derivatives): Control embryonic development of limbs and
organs; affect epidermal differentiation => dermatological use (Acne)
– PPARs (Peroxisome Proliferation-Activated Receptors): control metabolic
processes:
• PPARα: Target of Fibrates (cholesterol lowering drugs: stimulate β-
oxidation of fatty acids)
• PPARγ: Target of Glitazones (anti-diabetic drugs: induce expression of
proteins involved in insulin signaling => improved glucose uptake)
BIMM118