Distrib. Andinobates Virolo
Distrib. Andinobates Virolo
Distrib. Andinobates Virolo
Abstract.—Detailed information of geographic distribution is critical for the conservation and management of
endangered and endemic taxa. Such knowledge is limited for the Santander Poison Frog (Andinobates virolinensis),
a threatened frog endemic to the Cordillera Oriental of the Colombian Andes. Here, we use new and historical data
to model the potential distribution of this species and estimate its extent of occurrence. Our model predicted that
suitable habitat exists on the western slope of the Cordillera Oriental in Santander, Boyacá, and Cundinamarca
departments in Colombia. The occurrence of this species was strongly, positively associated with precipitation of
the driest month, and positively, but more weakly related to mean diurnal temperature range and isothermality.
Our models suggest the low elevations of the Chicamocha and Sogamoso canyons and the high elevations of the
Cordillera Oriental constitute unsuitable habitats for this species. We identified 10,828 km2 of suitable habitat, of
which about 3.5% is inside protected areas. Our findings suggest that A. virolinensis should be re-categorized from
Endangered to Vulnerable in the Red List of the International Union for the Conservation of Nature. Improving
protective measures, collaboration with local farmers, and expanding the network of national protected areas are
likely to benefit A. virolinensis and other species from this Andean region.
Key Words.—endemic species; extent of occurrence; geographic distribution; species distribution model
Figure 1. Adult male of Santander Poison Frog (Andinobates virolinensis) in Santander Department, Serranía de los Yariguíes,
municipality of San Vicente de Chucurí, vereda La Colorada, Colombia. Note one tadpole on back being transported to phytotelmata in
bromeliads. (Photographed by Carlos A. Hernández).
natural habitat (Amézquita and Rueda-Almonacid between 0800 and 1600. We identified specimens based
2004). Most information about the assessment of the on the original description of the species (Ruiz-Carranza
species is anecdotal. Consequently, understanding of and Ramírez-Pinilla 1992) and comparison with the
current conservation status and the nature of threats is key provided by Brown et al. (2011). We deposited
incomplete for A. virolinensis. This species is known specimens (UIS-A 5505, UIS-A 5506) in the Colección
from one national protected area (Santuario de Fauna y Herpetológica of Universidad Industrial de Santander.
Flora Guanentá Alto Río Fonce; Amézquita and Rueda-
Almonacid 2004), but the size of its local range in this Distribution data.—We compiled distribution
and other protected areas is unknown. data from our field surveys, published literature, and
Herein, we provide new locality records and develop specimens housed at Colección Herpetológica of
a species distribution model (SDM) for A. virolinensis. Universidad Industrial de Santander, Colombia (UIS);
We use our data and model to estimate the EOO for this Colección Herpetológica of Grupo de Ecofisiología del
species. We also review the representation of the species Comportamiento y Herpetología of Universidad de Los
in protected areas within its distributional range and Andes, Colombia (GECOH); the online catalogue of
propose an update to its conservation status following Instituto de Ciencias Naturales (ICN) of Universidad
IUCN guidelines. Lastly, we discuss conservation and Nacional de Colombia (http://www.biovirtual.unal.
research priorities that should contribute to the long- edu.co [Accessed 5 November 2015]); and Colección
term survival of A. virolinensis. de Vertebrados of Instituto Alexander von Humboldt,
Colombia (IAvH) through the SiB Colombia (http://
Materials and Methods www.sibcolombia.net [Accessed 5 November 2015]).
We assigned latitude/longitude to localities that lacked
Surveys.—We surveyed for the presence of A. coordinates based on site descriptions by the collectors
virolinensis in 24 localities in Santander Department and plotted their locations with Global Gazetteer Version
(Colombia). We selected these localities to include 2.3 (http://www.fallingrain.com [Accessed 11 January
areas where the species is known to be present, 2016]) and Google Earth (Google Inc., Mountain
unsurveyed areas within its previously hypothesized View, California, USA; Table 1). Although there is
range (Amézquita and Rueda-Almonacid 2004), and uncertainty around these coordinates, we expect them to
areas near but beyond its range limits as currently fall near or in the correct pixel of the environmental data
understood. We conducted surveys between January (pixel size is 30 arc-seconds, or about 1 km2; see next
2013 and March 2016 (8 mo in 2013, 5 mo in 2014, 6 paragraph). We used the Spatially Rarefy Occurrence
mo in 2015, and 1 mo in 2016), totaling 1,462 sampling analysis (package SDMtoolbox; Brown 2014) to reduce
hours. We performed diurnal visual encounter surveys sampling biases via spatial filtering (Anderson and Raza
(Crump and Scott 1994) and opportunistic observations 2010; Boria et al. 2014). This approach reduced our
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Herpetological Conservation and Biology
Figure 2. Habitats in the range of Santander Poison Frog (Andinobates virolinensis), Colombia. (A) Primary forest at type-locality,
municipality of Charalá, corregimiento of Virolín. (B) Secondary forest in municipality of Florián, vereda La Vueltiada. (C) Traditional
agroecosystem of mature mixed culture of native-shaded coffee and plantain trees in municipality of San Vicente de Chucurí, vereda
La Colorada. (D) Intensively grazed pastures near the type-locality (Santander Department). (Photographed by Carlos A. Hernández).
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Ramos et al.—Distribution and conservation of Andinobates virolinensis.
Table 1. Locality data (sorted from south to north) for Santander Poison Frog (Andinobates virolinensis) from Colombia. Date (month-
year) is for surveys conducted during this study. Dates in bold represent sites we did not survey for this study. Locality data (after
Spatially Rarefy Occurrence analysis) used in species distribution models are denoted (1). Coordinates inferred from Global Gazetteer
and Google Earth are marked (2). Coordinates are in decimal degrees (WGS-84 datum). Type Locality (sensu Ruiz-Carranza and
Ramírez-Pinilla 1992) includes coordinates based on subsequent surveys of Valderrama-Vernaza et al. (2010). Acronyms for museum
specimens are as in the text and elevation in meters above sea level.
We eliminated variables with low contribution and and Anderson (2014). We used recommended default
permutation importance scores (< 5%) in the full model. values for convergence threshold (10–5), maximum
We retained environmental variables with the highest number of iterations (500), maximum number of
jack-knife scores. We deleted variables that were highly background points (104), and default prevalence of the
correlated with these kept variables (Pearson r > 0.70). species (0.5). Lastly, we selected the logistic output
This process resulted in three bioclimatic variables for format, which yields continuous values ranging from 0 to
subsequent models (Table 2). 1 that indicate the probability of suitable environmental
Because of the low number of independent occur- conditions for the species (see Phillips and Dudík 2008).
rences (12), we generated models using the cross-
validated approach, with the minimum training presence Performance of models.—We evaluated model
(equal to the lowest presence decision threshold) to performance using (1) area under the curve (AUC) of
distinguish suitable from unsuitable areas (Pearson et the receiver operating characteristic (ROC) measure
al. 2007). This threshold identifies pixels predicted provided by MaxEnt, (2) success rate in jack-knife
to be at least as suitable as those where the species tests using the pValue Compute program from Pearson
has been recorded (Pearson et al. 2007). This method et al. (2007), and (3) sample size-corrected Akaike
has previously been used with sample sizes as small information criteria (AICc; Akaike 1974; Burnham and
as five records (e.g., Pearson et al. 2007; Anderson Anderson 2002) using ENMTools 1.3 (Warren et al.
and Raza 2010; Kamino et al. 2012; Chunco et al. 2010). Once we selected the best model (Table 3), its
2013; Shcheglovitova and Anderson 2013). To avoid logistic output was transformed to a binary prediction
overparameterization, we used linear plus quadratic model for the suitable habitat of the species (i.e., a
(LQ) and hinge (H) features (Shcheglovitova and presence/absence map) by applying the minimum
Anderson 2013; van Proosdij et al. 2016). We assessed training presence threshold value (0.401) obtained by
three alternative regularization multiplier values (0.5 MaxEnt. Then, we evaluated the final binary model
and 2.0; default setting is 1.0) following Radosavljevic by visual examination based on our knowledge of
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Herpetological Conservation and Biology
Figure 3. Distribution of Santander Poison Frog (Andinobates virolinensis) in the Cordillera Oriental of the Colombian Andes, Colombia.
(A) Location of the study area in north of South America. Rectangles represent the two methods used to define the study region for
calibrating distribution models of species. Method 1 is red. Method 2 (blue) defines a smaller region mainly in the Andes. Elevation
units are meters. (B) Regional map of historical (white circles) and new localities found during this study (green circles). Red polygon
indicates the range of the species sensu the International Union for the Conservation of Nature. (C) Spatially filtered localities used to
build the species distribution model (white circles). Locality details are in Table 1.
the natural history and geographic distribution of A. convex polygon enclosing all occurrence sites. We
virolinensis. This examination led us to the exclusion removed pixels identified as unsuitable habitats that
of a few small isolated areas located on the eastern were outside the documented altitudinal range of
slope of the Cordillera Oriental in Norte de Santander this species (i.e., 1,331–2,400 m; see Results), as
department, a region where no species of this genus is defined in the IUCN mapping protocols (https://www.
known to occur, and areas on the northwestern slope of conservationtraining.org [Accessed 16 March 2016]).
the Cordillera Central in Antioquia Department where Lastly, we calculated the area of the range polygon of
another species in the bombetes group (Andinobates the species as a proxy for the extent of occurrence of
opisthomelas) occurs (Acosta Galvis, A.R. 2017. Lista the species by summing the pixels within the final MCP.
de los anfibios de Colombia: Referencia en línea.
V.07.2017.0. Electronic database available at http:// Table 3. Performance statistics for two methods used to model
www.batrachia.com. [Accessed 28 December 2017]). the potential distribution of Santander Poison Frog (Andinobates
After our evaluation, we calculated the extent of virolinensis). An asterisk (*) denotes the combination of features
with highest performance values. AICc with a dash (--) are
occurrence based on pixels within the binary model. models with more parameters than occurrence points (i.e., > 12
parameters). The abbreviation Regul. = Regularization.
Minimum convex polygon.—We generated a
Success
minimum convex polygon (MCP) using Quantum GIS
Method Features Regul. AUC Rate AICc P
software (QGIS Development Team. 2016. Quantum
1 Linear plus 0.5 0.928 0.8 251.7 < 0.001
GIS Geographic Information System. Open Source quadratic
Geospatial Foundation Project. Version 2.8.2. Available
1 0.914 0.8 260.6 < 0.001
at http://qgis.osgeo.org [Accessed 22 January 2016]).
2 0.884 0.8 260.9 < 0.001
We used the Convex Hull function to create the smallest
Hinge 0.5 0.950 0.8 -- < 0.001
Table 2. Contribution percentage and permutation importance 1 0.954 0.8 -- < 0.001
of environmental variables used in distribution modeling of 2 0.955 1.0 257.6 < 0.001
Santander Poison Frog (Andinobates virolinensis). Variable codes
are defined in Appendix A. 2 Linear plus 0.5 0.948 0.6 242.1 < 0.001
quadratic
Environmental Contribution Permutation 1 0.936 0.8 247.8 < 0.001
Variable Code percentage importance
2 0.903 0.8 250.1 < 0.001
Precipitation of the BIO14 77.9 64.3
Driest Month Hinge 0.5 0.959 0.8 248.1 < 0.001
Mean Diurnal BIO2 17.1 19.7 1 0.960 0.8 246.1 < 0.001
Temperature Range 2 0.962* 1.0* 232.1* < 0.001
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Ramos et al.—Distribution and conservation of Andinobates virolinensis.
Figure 4. MaxEnt models of the potential geographic distribution of Santander Poison Frog (Andinobates virolinensis). (A) Logistic
output and (B) binary model (orange) after applying the decision threshold and visual validation. White circles indicate unfiltered
presence records (see Table 1). Elevation units are meters. (C) Protected areas (blue) near or in the binary model (orange). (D) Protected
areas (blue) near or in the minimum convex polygon (orange). Protected areas are: 1 = Parque Nacional Natural Serranía de los Yariguíes,
2 = Santuario de Fauna y Flora Guanentá Alto Río Fonce, 3 = Reserva Forestal Protectora Sierra El Peligro, and 4 = Reserva Forestal
Protectora Cuchilla El Minero.
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Herpetological Conservation and Biology
Table 4. Extent of occurrence (EOO) estimated for Santander Our model yielded very low habitat suitability scores
Poison Frog (Andinobates virolinensis) from the species distribution at high elevations (above about 2,400 m) in the Cordillera
model (SDM) and the minimum convex polygon (MCP).
Oriental and low elevations (below about 1,300 m)
Protected areas in Colombia are Parque Nacional Natural Serranía
de los Yariguíes (SY), Santuario de Fauna y Flora Guanentá Alto in the Chicamocha and Sogamoso canyons. Habitats
Río Fonce (GF), Reserva Forestal Protectora Nacional Cuchilla El beyond these unsuitable features were identified by the
Minero (CM), and Reserva Forestal Protectora Nacional Sierra El model as of low suitability and were clipped from the
Peligro (SP). final model based on the threshold value (Fig. 4B; see
EOO Methods). We estimated the total EOO for the species
EOO in protected
areas (km2) under to be 10,828 km2. The SDM showed that most of the
EOO protection predicted occurrence of this species (about 96.5% of
Method (km²) SY GF CM SP (%) EOO) is outside boundaries of protected areas (Fig. 4C;
SDM 10,828 311.8 30.6 18.7 15.3 3.47 Table 4).
MCP 6,973 446.9 2.1 - 11.9 6.61
Minimum convex polygon.—The EOO estimated
in Santander Department (UIS-A-3755) to northern with the MCP was 6,973 km2. The MCP (Fig. 4D)
Cundinamarca Department (ICN-12744; Figs. 3A and excludes large regions of Andean forest identified as
4). This represents an increase of at least 4,482 km2 over suitable habitat by the SDM (Fig. 4C). The MCP showed
the range reported by the IUCN (2,491 km2; Amézquita that a small portion of the predicted occurrence of this
and Rueda-Almonacid 2004). species (about 6.6% of EOO) is outside boundaries of
protected areas (Fig. 4D; Table 4).
Species distribution model.—Inclusion of
georeferenced localities generated models that better Discussion
represent the range limits of the species as currently
understood. Thus, we included these data in our The new records presented here improve our
distribution models. The extent of the study region knowledge of the geographical distribution of A.
affected model performance. Models calibrated mainly virolinensis, extend the range of the species, and
in the Andean region (Method 2) performed better than suggest areas for additional surveys where the species
models based on the broader region (Method 1). Method could be present. In Santander Department, the known
2 yielded a higher success rate than Method 1 (Table distribution includes the type locality and several
3), indicating low omission rates. Models with the additional locations through the western slope of the
hinge feature and high regularization multipliers (i.e., Cordillera Oriental. Single localities also occur in Boyacá
2.0) performed better and with less parameterization and Cundinamarca departments. The new locality
(Table 3). SDMs generated with Method 2 led to more record provided here from Boyacá Department fills the
statistically robust, less parameterized models and distribution gap between Santander and Cundinamarca
fewer predictions in environments where the species is departments. There is little or no information about
likely absent (Fig. 4A). The final model performed well A. virolinensis in several areas predicted to be suitable
with an AUC value of 0.957 ± 0.006 SD. The model by the models (e.g., southern Santander and northern
had a predictive success rate equal to 0.8 (P < 0.001), Boyacá and Cundinamarca). Factors not incorporated in
indicating low omission rates. These results indicate our models (e.g., land-cover, interspecies interactions,
that the model is informative for potential suitable diseases) may also limit the presence of A. virolinensis
habitat for A. virolinensis. in areas identified as suitable.
Predicted habitat suitability for A. virolinensis was According to the information available to date,
strongly associated with precipitation in the driest month we propose that the current IUCN status for A.
(contribution 77.9%) and modestly associated with virolinensis (i.e., Endangered, see Introduction) should
the mean diurnal temperature range and isothermality be downgraded to Vulnerable (VU), because its extent
(Table 2). Suitability increased sigmoidally with the pre- of occurrence (EOO) is > 5,000 km2 and < 20,000 km2
cipitation of the driest month, mean diurnal temperature (SDM = 10,828 km2, MCP = 6,973 km2). However, this
range, and isothermality. Suitability for A. virolinensis conservation status could change as new information is
was maximized around 50–60 mm of precipitation in the collected. The destruction of forests represents a major
driest month, 10–12° C for mean diurnal temperature threat for this species, as well as other species in this
range, and 83–93 for isothermality. The SDM predicted region of the Andes. This is especially true for Santander
suitable habitat for A. virolinensis on the western slope and Boyacá departments, where livestock grazing and
of the Cordillera Oriental in Santander, Boyacá, and intensive farming continue to increase (Sánchez-Cuervo
Cundinamarca departments (Fig. 4). et al. 2012). However, reliable data on how rapidly
forest destruction is occurring in the study area and how
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Ramos et al.—Distribution and conservation of Andinobates virolinensis.
this species responds to forest loss and degradation are However, some limitations are worth noting, including
lacking. The discovery of a population of A. virolinensis the limited occurrence data to build models using
on traditional sustainable agricultural systems at standard approaches and the absence of information
relatively high densities (42–73 adult individuals per ha; about changes in land use throughout the predicted range
Meza-Joya et al. 2015) suggests that it may be resilient of the species. Further surveys in unexplored or under-
to some types of land cover change, provided some key sampled areas, taking into consideration the detection
features of the native habitats are retained (e.g., large probabilities for the species, are needed. Such data
native trees with bromeliads). Estimations of detection would help generate more robust SDMs and improve
probabilities and local abundances are critical to assess understanding of the extent of occurrence and area of
occupancy and population trends for A. virolinensis. occupancy for this species.
Precipitation during the driest month was the most
important variable explaining the modeled range of A. Acknowledgments.—Collection and research permits
virolinensis (Table 2). Only two other predictors were in were granted by Autoridad Nacional de Licencias
our final model (mean diurnal range and isothermality) Ambientales (Resolución 0047-2015). Financial support
and these were much less influential. Areas with was provided by Conservation Leadership Programme
conditions outside favored range of precipitation during (Project # 02186714), Asociación Colombia Endémica,
the driest month (50–60 mm), and to a lesser extent, and Asociación Colombiana de Herpetología. We are
mean diurnal temperature range (10–12° C), likely very grateful to Daniel Mejía who kindly allowed us
represent unsuitable conditions for this species. High to use his unpublished locality records of Andinobates
elevation summits (above 2,400 m elevation) and low virolinensis and provided us with the data from Grupo
elevation canyons (below 1,300 m) may be outside the de Ecofisiología del Comportamiento y Herpetología
physiological tolerances and ecological requirements of of Universidad de Los Andes, Colombia (GECOH).
the species. The Chicamocha and Sogamoso canyons We thank Martha Ramírez for granting us access
reach depths of 400 m and host dry tropical forest and to specimens housed at herpetological collection of
semi-arid spiny tropical scrubland. High elevations Universidad Industrial de Santander (UIS). We also
(up to about 2,600 m) support forests and Páramo thank Claudia Infante, Jennifer Quintero, and Oscar
ecosystems characterized by low temperatures and Hernández, who collaborated during fieldwork. We
high solar radiation (Kattan et al. 2004; Navas 2006; also thank Daniel Mejía, Mauricio Torres, Ralph
Morales et al. 2007). Our inspections of the literature, Saporito, and Stefan Lötters for valuable suggestions
herpetological collections, and unpublished results from and comments on this paper.
surveys in and around these features have failed to
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Eliana Ramos is a Biologist with a Master’s degree and she is largely interested in herpetology. Her main
research interests are the ecology, natural history, and conservation of Neotropical amphibians and reptiles.
(Photographed by Carlos A. Hernández).
Fabio Leonardo Meza-Joya is a Biologist with a Master’s degree who has been studying amphibians and
reptiles in Colombia since 2009. His research interests span a wide variety of topics, including morphol-
ogy, taxonomy, ecology, natural history, evolution, and conservation of amphibian and reptiles. (Photo-
graphed by Eliana Ramos).
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Herpetological Conservation and Biology
Appendix A. Environmental variables used in species distribution models. Data are from WorldClim (Hijmans et al. 2005). Units are in
brackets.
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Appendix B. Sampling localities where Santander Poison Frog (Andinobates virolinensis) has not been recorded. Data sources are from this study and from additional surveys by the authors (ERP,
FLMJ, and CHJ). Coordinates are in decimal degrees (WGS-84 datum). ‘Effort’ is survey effort in total sampling hours (number of surveys). Date (month and year) is for most recent survey carried
out in each locality. Localities are sorted chronologically from older to recent.
69
11–2013 Santa Bárbara Santander Vereda Esparta, farm Monterey 64 (2) 7.0203°N, 72.9027°W 2,263 FLMJ
04–2014 Barrancabermeja Santander Vereda Pozo de Nutria, Quinta Estrella 186 (4) 7.0350°N, 73.6416°W 102 ERP and FLMJ
06–2014 San Gil Santander Vereda San José, farm Villa Mandarina 32 (1) 6.5214°N, 73.1075°W 1,584 This study
08–2014 Barrancabermeja Santander Universidad de La Paz, Reserva Santa Lucía 196 (4) 7.0818°N, 73.7490°W 104 ERP
11–2014 Guaca Santander Vereda Quebradas 32 (1) 6.9146°N, 72.8711°W 2,928 This study
Ramos et al.—Distribution and conservation of Andinobates virolinensis.
04–2015 Páramo Santander Vereda Juan Curí 10 (2) 6.3683°N, 73.1718°W 1,414 CHJ
06–2015 Sabana de Torres Santander Reserva Natural El Cabildo Verde 88 (3) 7.3521°N, 73.4992°W 193 This study
07–2015 San Vicente de Chucurí Santander Vereda La Lizama, Bioparque El Arboretum 162 (3) 7.0767°N, 73.5383°W 257 This study
09–2015 Ríonegro Santander Llano de Palmas, vereda La Honda 72 (4) 7.2458°N, 73.2102°W 845 FLMJ and CHJ
09–2015 El Carmen del Chucurí Santander El Centenario, vereda Los Andes 98 (2) 6.6896°N, 73.6154°W 502 This study
10–2015 Charta Santander Vereda La Rinconada, stream El Juncal 16 (1) 7.2858°N, 72.9641°W 2,119 FLMJ
11–2015 Matanza Santander Vereda Vulcaré, stream Vulcaré 32 (1) 7.3407°N, 72.9932°W 1,597 FLMJ and CHJ
11–2015 Guaduas Cundinamarca Vereda Chipauta 24 (1) 5.0654°N, 74.5632°W 1,636 FLMJ
12–2015 El Colegio Cundinamarca El Triunfo, Hacienda Misiones 56 (2) 4.5441°N, 74.4375°W 1,508 FLMJ
12–2015 Albán Cundinamarca Vereda El Garbanzal, Hacienda Rancho Grande 12 (1) 4.8733°N, 74.4434°W 2,098 FLMJ
12–2015 La Vega Cundinamarca Vereda San Juan 24 (1) 4.9791°N, 74.3214°W 1,528 FLMJ
03–2016 Charalá Santander Reserva Nuestro Sueño 20 (2) 6.2912°N, 73.1904°W 1,745 CHJ