Acsmedchemlett 8b00477 PDF
Acsmedchemlett 8b00477 PDF
Acsmedchemlett 8b00477 PDF
Cite This: ACS Med. Chem. Lett. 2019, 10, 431−436 pubs.acs.org/acsmedchemlett
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S Supporting Information
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strated that unnatural DOPA-containing peptides obtained from recorded a total of 44 active neurons (5 slices) with a regular
DOPA-quinone intermediates12,13 were characterized by anti- basal firing rate (1.71 ± 0.12 Hz), all of which responded with
PD activity on individual DAergic neurons in rat ex vivo inhibition of their firing rate, as expected from typical DAergic
midbrain slices.14 neurons following stimulation of their somato-dendritic
With the aim to investigate the role of quinone intermediates D2Rs.1−3,5,6,19,20 The firing remained inhibited under continu-
in DAergic neurons function, we focused our attention on the ous perfusion in quinpirole, such that the firing rate of the
synthesis of L-DOPA-quinone and on its possible interactions DAergic neurons was inhibited to 4.07 ± 3.56% of control after
with the GIRK channels activated in response to D 2 10 to 15 min in 100 nM quinpirole. This perfusion time was
autoreceptor stimulation. L-DOPA-quinone was synthesized selected to make sure that a clear steady-state level had been
by selective oxidation of protected L-tyrosine, by using 2- reached.21 However, when DOPA-quinone 3 (300 μM) was
iodoxybenzoic acid (IBX). Molecular dynamics (MD) simu- added to the medium, still in the continuous presence of
lations have been performed to rationalize the biological data, quinpirole, a partial recovery from firing inhibition was
suggesting an interaction mechanism between L-DOPA- observed, attaining 81.85 ± 19.08% of control after 15 min, a
quinone and a specific cysteine residue of GIRK2 that value that was significantly different from that in quipirole alone
encompasses the transmembrane protein.
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(P < 0.01; F(2,12) = 15.99, n = 5; Figure 1). The possible
desensitization of D2Rs by DOPA-quinone was ruled-out by
RESULTS AND DISCUSSION looking at its effect on the GIRK-mediated response by GABAB
L-DOPA-quinone has never been isolated in the past as a receptor stimulation.
consequence of its high reactivity to yield DOPAchrome,
followed by polymerization to melanin.15 The use of L-DOPA-
quinone that we made as intermediate for the preparation of
unnatural L-DOPA-containing peptides14 suggested its in-
creased stability when the α-amino functionality was protected.
For this reason, N-Boc-L-Tyr tert-butyl ester 1 was subjected to
IBX oxidation avoiding reducing conditions (Scheme 1). IBX
Figure 3. Crystal structure of GIRK2 channel (PDB code 4KFM). The its opening, revealing a concerted mechanism of gating in which
protein loops implied in channel gating, i.e., CD-loop, G-loop, and N- all protein monomers cooperatively work to allow the necessary
terminus, are shown in green, blue, and orange, respectively, together
global conformational change.28 Thus, C65 was covalently
with the sodium ion. Residues D228, H233, and E315, involved in
channel gating, are displayed together with C65. modified in all channel monomers prior to MD simulations.
The MD simulations confirmed the presence of the
interactions among 5-cDOPA and the two lysine residues K64
covalent docking protocol of AutoDock4.2,34 using a modified and K90, and revealed that the amino group of 5-cDOPA was
set of parameters (see Materials and Methods for details).35,36 able to form a strong salt bridge with the carboxylate group of
Since C65 is placed in front of the binding site of Na+ ions, we E315 (Figure 4), maintained for more than 85% of the
hypothesized that the catechol moiety of 5-cDOPA could even simulation, on average. The interaction with E315, which
occupy such pocket, thus interfering with the agonist-like effect belongs to the G-loop and is crucially involved in the channel
of Na+ in the modulation of GIRK2 gating. In fact, the gating mechanism, might have a key role in determining the
amplification of GIRK2-mediated current is concentration- effect of 5-cDOPA on GIRK-mediated current. In fact,
dependent since Na+ constitutes a mechanism of negative mutations of this particular residue, which is extremely
feedback on excessive electrical excitability, which occurs when conserved among all GIRK channels, can substantially alter
cellular Na+ concentration rise enough above normal levels.37 the protein functionality and/or abolish the channel-induced
Therefore Na+ is not supposed to be a constitutive element of current.29
GIRK2 channel, and we removed it from the protein structure Moreover, in the MD simulation of native GIRK2 we
prior to docking calculations. Interestingly, the calculation observed an interaction between the carboxylate group of
suggested that 5-cDOPA was more likely to be placed outside E315 and the side chain of the residue H233 in CD-loop (Figure
Na+ binding site rather than within the pocket (Figure 4). This is 3). During the movements of the CD-loop associated to channel
probably due to the presence of the carboxylic group in the gating, H233 should undergo a profound conformational
ligand, which is able to form strong interactions with the lysine rearrangement, inverting its orientation and climbing over the
residues surrounding the binding site (K64 and K90). CD-loop itself (Figure S8).37 Interestingly, the formation of the
To assess the reliability of the docking solution and to evaluate salt bridge between 5-cDOPA and E315 determined the
if 5-cDOPA could effectively interfere with GIRK2 opening, disruption of the interaction between E315 and H233; this
molecular dynamics (MD) simulations were also performed. produced a modification of H233 orientation totally opposite
The MD protocol was set up using the X-ray structure of wild- with respect to the conformational rearrangement that should be
type GIRK2 channel in complex with Na+ ions and PIO associated to channel gating. In fact, the imidazole ring of H233
cofactors as a template. After embedding the protein in a lipid moved within Na+ binding site after few nanoseconds of
bilayer and solvating the system on the “extracellular” and simulation and remained trapped between CD-loop and V276,
“intracellular” side (see Materials and Methods for details), 50 locked inside the pocket by the aromatic ring of 5-cDOPA
ns of MD simulations were performed. As shown in Figure S7, (Figure 4). Thus, the reciprocal disposition of 5-cDOPA and
the total energy of the native GIRK2 rapidly (after 1 ns) reached H233 would prevent this latter residue to move outside Na+
the equilibrium. Moreover, after about 2.5 ns, the root-mean binding site, blocking the conformational freedom of the whole
squared deviation of the protein α carbons with respect to the CD-loop and impeding the rearrangement required for channel
crystallographic structure showed an overall constant value opening.
around 2.0 Å. The same MD protocol was applied to the C65- In addition, 5-cDOPA forms hydrogen bonds with CD-loop
covalently modified protein, and the interactions observed residues like N231 or H233 itself that reinforce the conforma-
during the simulation between 5-cDOPA and the surrounding tional restraint of the CD-loop determined by the presence of
protein residues were analyzed. According to Wang and co- the covalent ligand. Through this network of interactions, 5-
workers, four Gβγ subunits must bind GIRK2 channel to allow cDOPA is anchored to and interconnects with different N-
434 DOI: 10.1021/acsmedchemlett.8b00477
ACS Med. Chem. Lett. 2019, 10, 431−436
ACS Medicinal Chemistry Letters Letter
quinone (DA-quinone), a compound that cannot be isolated The Supporting Information is available free of charge on the
due to its very high reactivity. In particular, we evaluated ACS Publications website at DOI: 10.1021/acsmedchem-
whether the alkylation of C65 by DA-quinone to afford 5-S- lett.8b00477.
cysteinyldopamine (5-cDA) might produce an effect on GIRK2 Slice preparation for electrophysiology; multielectrode
channel gating similar to that previously predicted for 5-cDOPA. array recordings; drugs used for electrophysiology;
In this latter case, covalent docking suggested that 5-cDA would covalent docking; molecular dynamics simulations;
preferentially occupy the Na+ binding site, interacting with the covalent docking results for DOPA-quinone bound to
protein loops implied in the channel gating. MD simulations C321; analysis of the MD simulation; superimposed
highlighted that the amino group of 5-cDA is able to form structures of GIRK2; MD simulation results of GIRK2
interactions with the residues that can also coordinate the Na+ with C65 and C321 concurrently alkylated by DOPA-
when this ion is present in the binding site. Particularly, a stable quinone; general information for reagents and synthetic
interaction with the carboxylate group of D228 is observed, and procedures; general information for the HPLC system;
it is maintained for about 80% of the simulation, on average. The HPLC spectrum of L-DOPA-quinone 3 (PDF)
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amino group of 5-cDA can also arrange stable hydrogen bonds
with the backbone carbonyls of D228 and other residues such as AUTHOR INFORMATION
R230, thus demonstrating to well fit the pocket constituting the Corresponding Authors
Na+ binding site to which it is strongly anchored (Figure 5). The *E-mail: [email protected].
orientation of 5-cDA results in stabilization by additional H- *E-mail: [email protected].
bonds between its hydroxy groups and residues N231 and V67. *E-mail: [email protected].
Particularly, the H-bond interaction with the backbone carbonyl
ORCID
of V67 was observed for more than 80% of the whole MD
simulation, on average. Bruno M. Bizzarri: 0000-0001-7085-5432
It is worth noting that the interaction between E315 and Raffaele Saladino: 0000-0002-4420-9063
H233 was maintained as in the reference simulation of wild-type Notes
The authors declare no competing financial interest.
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GIRK2 (Figure 3) and that no conformational rearrangement of
H233 is observed. However, 5-cDA is able to form a wide
network of interactions with CD-loop residues, and thus, a deep ACKNOWLEDGMENTS
tethering between N-terminus and CD-loop could stabilize the The Filas project MIGLIORA from Regione Lazio and the
channel in the pre-open conformation and prevent channel project PRONAT from CNCCS SCARL are acknowledged.
435 DOI: 10.1021/acsmedchemlett.8b00477
ACS Med. Chem. Lett. 2019, 10, 431−436
ACS Medicinal Chemistry Letters
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Letter