Biyani's Think Tank: Cell Biology & Genetics

Biyani's Think Tank
Concept based notes

Cell Biology & Genetics
[B.Sc. Part-I]
Shikha Mathur
and
Abhilasha sharma
Lecturer
Deptt. of Science
Biyani Girls College, Jaipur
2
Published by :
Think Tanks
Biyani Group of Colleges
Concept & Copyright :

Biyani Shikshan Samiti
Sector-3, Vidhyadhar Nagar,
Jaipur-302 023 (Rajasthan)
Ph : 0141-2338371, 2338591-95 Fax : 0141-2338007
E-mail : [email protected]
Website :www.gurukpo.com; www.biyanicolleges.org
Edition : 2012
Price :
While every effort is taken to avoid errors or omissions in this Publication, any
mistake or omission that may have crept in is not intentional. It may be taken note of
that neither the publisher nor the author will be responsible for any damage or loss of
any kind arising to anyone in any manner on account of such errors and omissions.
Leaser Type Setted by :

Biyani College Printing Department
Cell Biology and Genetics 3
Preface
I am glad to present this book, especially designed to serve the needs

of the students. The book has been written keeping in mind the general
weakness in understanding the fundamental concepts of the topics. The book is
self-explanatory and adopts the ―Teach Yourself‖ style. It is based on question-answer
pattern. The language of book is quite easy and understandable based on scientific
approach.
Any further improvement in the contents of the book by making corrections,
omission and inclusion is keen to be achieved based on suggestions from the readers for
which the author shall be obliged.
I acknowledge special thanks to Mr. Rajeev Biyani, Chairman & Dr. Sanjay Biyani,
Director (Acad.) Biyani Group of Colleges, who are the backbones and main concept
provider and also have been constant source of motivation throughout this Endeavour.
They played an active role in coordinating the various stages of this Endeavour and
spearheaded the publishing work.
I look forward to receiving valuable suggestions from professors of various
educational institutions, other faculty members and students for improvement of the
quality of the book. The reader may feel free to send in their comments and suggestions
to the under mentioned address.
Author
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Contents
S. No Chapter Name
1
Cell Structure
2 Cell Membrane
3
Nucleus
4 Nucleic Acid
5
Mendelism
6
Chromosomal Mutations
7
Cytoplasmic Inheritance
4 Glossary
5 MCQ
6 Case study
7 Previous question paper
Section A
Cell Structure
Q-1 Write down about structure and function of the animal cell.
Ans. The cell is the basic structural and functional unit of all known living organisms.
It is the smallest unit of life that is classified as a living thing, and is often called
the building block of life. Organisms can be classified as unicellular (consisting of
a single cell; including most bacteria) or multicellular (including plants and
animals). Humans contain about 10 trillion (1013) cells. Most plant and animal
cells are between 1 and 100 µm and therefore are visible only under the
microscope.
The word cell comes from the Latin cellula, meaning "a small room". The
descriptive term for the smallest living biological structure was coined by Robert
Hooke in a book he published in 1665 when he compared the cork cells he saw
through his microscope to the small rooms monks lived in.
Prokaryotic cells
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The prokaryote cell is simpler, and therefore smaller, than a eukaryote cell,
lacking a nucleus and most of the other organelles of eukaryotes. There are two
kinds of prokaryotes: bacteria and archaea; these share a similar structure.
Nuclear material of prokaryotic cell consist of a single chromosome that is in

direct contact with cytoplasm. Here, the undefined nuclear region in the
cytoplasm is called nucleoid.
A prokaryotic cell has three architectural regions:
On the outside, flagella and pili project from the cell's surface. These are
structures (not present in all prokaryotes) made of proteins that facilitate
movement and communication between cells;
Enclosing the cell is the cell envelope – generally consisting of a cell wall covering
a plasma membrane though some bacteria also have a further covering layer
called a capsule. The envelope gives rigidity to the cell and separates the interior
of the cell from its environment, serving as a protective filter. Though most
prokaryotes have a cell wall, there are exceptions such as Mycoplasma (bacteria)
and Thermoplasma (archaea). The cell wall consists of peptidoglycan in bacteria, and
acts as an additional barrier against exterior forces. It also prevents the cell from
expanding and finally bursting (cytolysis) from osmotic pressure against a
hypotonic environment. Some eukaryote cells (plant cells and fungi cells) also
have a cell wall;
Inside the cell is the cytoplasmic region that contains the cell genome (DNA) and
ribosomes and various sorts of inclusions. A prokaryotic chromosome is usually a
circular molecule (an exception is that of the bacterium Borrelia burgdorferi, which
causes Lyme disease). Though not forming a nucleus, the DNA is condensed in a
nucleoid. Prokaryotes can carry extrachromosomal DNA elements called plasmids,
which are usually circular. Plasmids enable additional functions, such as
antibiotic resistance.
Eukaryotic cells
Plants, animals, fungi, slime moulds, protozoa, & algae are all Eukaryotic. These
cells are about 15 times wider than a typical prokaryote and can be as much as
1000 times greater in volume. The major difference between prokaryotes and
eukaryotes is that eukaryotic cells contain membrane-bound compartments in
which specific metabolic activities take place. Most important among these is a
cell nucleus, a membrane-delineated compartment that houses the eukaryotic
cell's DNA. This nucleus gives the eukaryote its name, which means "true
nucleus." Other differences include:
The plasma membrane resembles that of prokaryotes in function, with minor

differences in the setup. Cell walls may or may not be present.
The eukaryotic DNA is organized in one or more linear molecules, called
chromosomes, which are associated with histone proteins. All chromosomal
DNA is stored in the cell nucleus, separated from the cytoplasm by a
membrane. Some eukaryotic organelles such as mitochondria also contain
some DNA.
Many eukaryotic cells are ciliated with primary cilia. Primary cilia play
important roles in chemosensation, mechanosensation, and thermosensation.
Cilia may thus be "viewed as sensory cellular antennae that coordinate a large
number of cellular signaling pathways, sometimes coupling the signaling to
ciliary motility or alternatively to cell division and differentiation."[5]
Eukaryotes can move using motile cilia or flagella. The flagella are more
complex than those of prokaryotes.
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Structure of a typical plant cell

Table 2: Comparison of structures between animal and plant cells
Typical animal cell Typical plant cell
Nucleus
o Nucleolus (within nucleus) Nucleus
Rough endoplasmic reticulum o Nucleolus (within nucleus)
(ER) Rough ER
Smooth ER Smooth ER
Ribosomes Ribosomes
Cytoskeleton Cytoskeleton
Organelles Golgi apparatus Golgi apparatus (dictiosomes)
Cytoplasm Cytoplasm
Mitochondria Mitochondria
Vesicles Plastids and its derivatives
Lysosomes Vacuole(s)
Centrosome Cell wall
o Centrioles
Subcellular components
All cells, whether prokaryotic or eukaryotic, have a membrane that envelops the
cell, separates its interior from its environment, regulates what moves in and out
(selectively permeable), and maintains the electric potential of the cell. Inside the
membrane, a salty cytoplasm takes up most of the cell volume. All cells possess
DNA, the hereditary material of genes, and RNA, containing the information
necessary to build various proteins such as enzymes, the cell's primary
machinery. There are also other kinds of biomolecules in cells. This article lists
these primary components of the cell, then briefly describe their function.
Membrane
The cytoplasm of a cell is surrounded by a cell membrane or plasma membrane.

The plasma membrane in plants and prokaryotes is usually covered by a cell wall.
This membrane serves to separate and protect a cell from its surrounding
environment and is made mostly from a double layer of lipids (hydrophobic fat-
like molecules) and hydrophilic phosphorus molecules. Hence, the layer is called
a phospholipid bilayer. It may also be called a fluid mosaic membrane.
Embedded within this membrane is a variety of protein molecules that act as
channels and pumps that move different molecules into and out of the cell. The
membrane is said to be 'semi-permeable', in that it can either let a substance
(molecule or ion) pass through freely, pass through to a limited extent or not pass
through at all. Cell surface membranes also contain receptor proteins that allow
cells to detect external signaling molecules such as hormones.
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Cytoskeleton
Bovine Pulmonary Artery Endothelial cell: nuclei stained blue, mitochondria

stained red, and F-actin, an important component in microfilaments, stained
green. Cell imaged on a fluorescent microscope.
The cytoskeleton acts to organize and maintain the cell's shape; anchors
organelles in place; helps during endocytosis, the uptake of external materials by
a cell, and cytokinesis, the separation of daughter cells after cell division; and
moves parts of the cell in processes of growth and mobility. The eukaryotic
cytoskeleton is composed of microfilaments, intermediate filaments and
microtubules. There is a great number of proteins associated with them, each
controlling a cell's structure by directing, bundling, and aligning filaments. The
prokaryotic cytoskeleton is less well-studied but is involved in the maintenance of
cell shape, polarity and cytokinesis.[6]
Genetic material
Two different kinds of genetic material exist: deoxyribonucleic acid (DNA) and
ribonucleic acid (RNA). Most organisms use DNA for their long-term information
storage, but some viruses (e.g., retroviruses) have RNA as their genetic material.
The biological information contained in an organism is encoded in its DNA or
RNA sequence. RNA is also used for information transport (e.g., mRNA) and
enzymatic functions (e.g., ribosomal RNA) in organisms that use DNA for the
genetic code itself. Transfer RNA (tRNA) molecules are used to add amino acids
during protein translation.
Prokaryotic genetic material is organized in a simple circular DNA molecule (the
bacterial chromosome) in the nucleoid region of the cytoplasm. Eukaryotic
genetic material is divided into different, linear molecules called chromosomes
inside a discrete nucleus, usually with additional genetic material in some
organelles like mitochondria and chloroplasts (see endosymbiotic theory).
A human cell has genetic material contained in the cell nucleus (the nuclear
genome) and in the mitochondria (the mitochondrial genome). In humans the
nuclear genome is divided into 23 pairs of linear DNA molecules called
chromosomes. The mitochondrial genome is a circular DNA molecule distinct
from the nuclear DNA. Although the mitochondrial DNA is very small compared
to nuclear chromosomes, it codes for 13 proteins involved in mitochondrial
energy production and specific tRNAs.
Foreign genetic material (most commonly DNA) can also be artificially

introduced into the cell by a process called transfection. This can be transient, if
the DNA is not inserted into the cell's genome, or stable, if it is. Certain viruses
also insert their genetic material into the genome.
Organelles
The human body contains many different organs, such as the heart, lung, and
kidney, with each organ performing a different function. Cells also have a set of
"little organs," called organelles, that are adapted and/or specialized for carrying
out one or more vital functions. Both eukaryotic and prokaryotic cells have
organelles but organelles in eukaryotes are generally more complex and may be
membrane bound.
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There are several types of organelles in a cell. Some (such as the nucleus and golgi
apparatus) are typically solitary, while others (such as mitochondria, peroxisomes
and lysosomes) can be numerous (hundreds to thousands). The cytosol is the
gelatinous fluid that fills the cell and surrounds the organelles.
Cell nucleus – eukaryotes only - A cell's information center, the cell nucleus is
the most conspicuous organelle found in a eukaryotic cell. It houses the cell's
chromosomes, and is the place where almost all DNA replication and RNA
synthesis (transcription) occur. The nucleus is spherical and separated from
the cytoplasm by a double membrane called the nuclear envelope. The nuclear
envelope isolates and protects a cell's DNA from various molecules that could
accidentally damage its structure or interfere with its processing. During
processing, DNA is transcribed, or copied into a special RNA, called
messenger RNA (mRNA). This mRNA is then transported out of the nucleus,
where it is translated into a specific protein molecule. The nucleolus is a
specialized region within the nucleus where ribosome subunits are assembled.
In prokaryotes, DNA processing takes place in the cytoplasm.
Mitochondria and Chloroplasts – eukaryotes only - the power generators:

Mitochondria are self-replicating organelles that occur in various numbers,
shapes, and sizes in the cytoplasm of all eukaryotic cells. Mitochondria play a
critical role in generating energy in the eukaryotic cell. Mitochondria generate
the cell's energy by oxidative phosphorylation, using oxygen to release energy
stored in cellular nutrients (typically pertaining to glucose) to generate ATP.
Mitochondria multiply by splitting in two. Respiration occurs in the cell
mitochondria.
Endoplasmic reticulum – eukaryotes only: The endoplasmic reticulum (ER) is

the transport network for molecules targeted for certain modifications and
specific destinations, as compared to molecules that float freely in the
cytoplasm. The ER has two forms: the rough ER, which has ribosomes on its
surface and secretes proteins into the cytoplasm, and the smooth ER, which
lacks them. Smooth ER plays a role in calcium sequestration and release.
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Golgi apparatus – eukaryotes only : The primary function of the Golgi apparatus
is to process and package the macromolecules such as proteins and lipids that are
synthesized by the cell.
Ribosomes: The ribosome is a large complex of RNA and protein molecules. They
each consist of two subunits, and act as an assembly line where RNA from the
nucleus is used to synthesise proteins from amino acids. Ribosomes can be found
either floating freely or bound to a membrane (the rough endoplasmatic
reticulum in eukaryotes, or the cell membrane in prokaryotes).
Lysosomes and Peroxisomes – eukaryotes only: Lysosomes contain digestive

enzymes (acid hydrolases). They digest excess or worn-out organelles, food
particles, and engulfed viruses or bacteria. Peroxisomes have enzymes that rid the
cell of toxic peroxides. The cell could not house these destructive enzymes if they
were not contained in a membrane-bound system.
Centrosome – the cytoskeleton organiser: The centrosome produces the

microtubules of a cell – a key component of the cytoskeleton. It directs the
transport through the ER and the Golgi apparatus. Centrosomes are composed of
two centrioles, which separate during cell division and help in the formation of
the mitotic spindle. A single centrosome is present in the animal cells. They are
also found in some fungi and algae cells.
Vacuoles: Vacuoles store food and waste. Some vacuoles store extra water. They
are often described as liquid filled space and are surrounded by a membrane.
Some cells, most notably Amoeba, have contractile vacuoles, which can pump
water out of the cell if there is too much water. The vacuoles of eukaryotic cells
are usually larger in those of plants than animals.
Structures outside the cell membrane
Many cells also have structures which exist wholly or partially outside the cell
membrane. These structures are notable because they are not protected from the
external environment by the impermeable cell membrane. In order to assemble
these structures export processes to carry macromolecules across the cell
membrane must be used.
Cell wall
Many types of prokaryotic and eukaryotic cell have a cell wall. The cell wall acts
to protect the cell mechanically and chemically from its environment, and is an
additional layer of protection to the cell membrane. Different types of cell have
cell walls made up of different materials; plant cell walls are primarily made up
of pectin, fungi cell walls are made up of chitin and bacteria cell walls are made
up of peptidoglycan.
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Prokaryotic
Capsule
A gelatinous capsule is present in some bacteria outside the cell membrane and
cell wall. The capsule may be polysaccharide as in pneumococci, meningococci or
polypeptide as Bacillus anthracis or hyaluronic acid as in streptococci. Capsules
are not marked by normal staining protocols and can be detected by special stain.
Flagella
Flagella are organelles for cellular mobility. The bacterial flagellum stretches from
cytoplasm through the cell membrane(s) and extrudes through the cell wall. They
are long and thick thread-like appendages, protein in nature. Are most commonly
found in bacteria cells but are found in animal cells as well.
Fimbriae (pili)
They are short and thin hair like filaments, formed of protein called pilin
(antigenic). Fimbriae are responsible for attachment of bacteria to specific
receptors of human cell (adherence). There are special types of pili called (sex pili)
involved in conjunction.[citation needed]
Functions
Growth and metabolism
Between successive cell divisions, cells grow through the functioning of cellular
metabolism. Cell metabolism is the process by which individual cells process
nutrient molecules. Metabolism has two distinct divisions: catabolism, in which
the cell breaks down complex molecules to produce energy and reducing power,
and anabolism, in which the cell uses energy and reducing power to construct
complex molecules and perform other biological functions. Complex sugars
consumed by the organism can be broken down into a less chemically complex
sugar molecule called glucose. Once inside the cell, glucose is broken down to
make adenosine triphosphate (ATP), a form of energy, through two different
pathways.
The first pathway, glycolysis, requires no oxygen and is referred to as anaerobic
metabolism. Each reaction is designed to produce some hydrogen ions that can
then be used to make energy packets (ATP). In prokaryotes, glycolysis is the only
method used for converting energy.
The second pathway, called the Krebs cycle, or citric acid cycle, occurs inside the
mitochondria and can generate enough ATP to run all the cell functions.
An overview of protein synthesis.
Within the nucleus of the cell (light blue), genes (DNA, dark blue) are transcribed
into RNA. This RNA is then subject to post-transcriptional modification and
control, resulting in a mature mRNA (red) that is then transported out of the
nucleus and into the cytoplasm (peach), where it undergoes translation into a
protein. mRNA is translated by ribosomes (purple) that match the three-base
codons of the mRNA to the three-base anti-codons of the appropriate tRNA.
Newly synthesized proteins (black) are often further modified, such as by binding
to an effector molecule (orange), to become fully active.
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Creation
Cell division involves a single cell (called a mother cell) dividing into two daughter
cells. This leads to growth in multicellular organisms (the growth of tissue) and to
procreation (vegetative reproduction) in unicellular organisms.
Prokaryotic cells divide by binary fission. Eukaryotic cells usually undergo a

process of nuclear division, called mitosis, followed by division of the cell, called
cytokinesis. A diploid cell may also undergo meiosis to produce haploid cells,
usually four. Haploid cells serve as gametes in multicellular organisms, fusing to
form new diploid cells.
DNA replication, or the process of duplicating a cell's genome, is required every

time a cell divides. Replication, like all cellular activities, requires specialized
proteins for carrying out the job.
Protein synthesis
Cells are capable of synthesizing new proteins, which are essential for the
modulation and maintenance of cellular activities. This process involves the
formation of new protein molecules from amino acid building blocks based on
information encoded in DNA/RNA. Protein synthesis generally consists of two
major steps: transcription and translation.
Transcription is the process where genetic information in DNA is used to produce

a complementary RNA strand. This RNA strand is then processed to give
messenger RNA (mRNA), which is free to migrate through the cell. mRNA
molecules bind to protein-RNA complexes called ribosomes located in the
cytosol, where they are translated into polypeptide sequences. The ribosome
mediates the formation of a polypeptide sequence based on the mRNA sequence.
The mRNA sequence directly relates to the polypeptide sequence by binding to
transfer RNA (tRNA) adapter molecules in binding pockets within the ribosome.
The new polypeptide then folds into a functional three-dimensional protein
molecule.
Movement or motility
Cells can move during many processes: such as wound healing, the immune
response and cancer metastasis. For wound healing to occur, white blood cells
and cells that ingest bacteria move to the wound site to kill the microorganisms
that cause infection.
At the same time fibroblasts (connective tissue cells) move there to remodel
damaged structures. In the case of tumor development, cells from a primary
tumor move away and spread to other parts of the body. Cell motility involves
many receptors, crosslinking, bundling, binding, adhesion, motor and other
proteins.[8] The process is divided into three steps – protrusion of the leading edge
of the cell, adhesion of the leading edge and de-adhesion at the cell body and
rear, and cytoskeletal contraction to pull the cell forward. Each step is driven by
physical forces generated by unique segments of the cytoskeleton.[9][10]
Q-3 Write down the difference between prokaryotic and eukaryotic cell
Ans.
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Cell Membrane
Q.1 Write down about structure and function of the cell membrane.
Ans. The cell membrane made-up of lipids, proteins, and carbohydrates.
Lipids
Lipid molecules are insoluble in water. Lipids are hydrophobic because the
molecules consist of long, 18-22 carbon, hydrocarbon backbones with only a small
amount of oxygen containing groups. Lipids are responsible for many functions
in organisms. They are one of the major components of waxes, pigments, steroid
hormones, and cell membranes. Fats, steriods, and phospholipids are very
important in the functioning of cell membranes.
Fats (triacylglycerols)
Two different classes of molecules are responsible for synthesis of fats:

Fatty acids attached to the alcohol glycerol. The fatty acids are long, unbranched
hydrocardons that terminate with an acidic carboxyl group. The fatty acid can be
of two types: saturated and unsaturated. Saturated fatty acids have no carbon-
carbon double bonds (they are "saturated" with hydrogen) while the unsaturated
fatty acids have one to four double bonds between adjacent carbon atoms. These
double bonds introduce "kinks" in the carbon chain which has important
consequences on the fluid nature of lipid membranes.To construct a fat, or
triacylglycerol, three fatty acid molecules are attached to the glycerol through an
22
ester bond between the carboxyl group of the fatty acid and the three alcohol
groups of a glycerol molecule.
An unsaturated fat has at least one unsaturated fatty acid whereas a saturated fat
has none. Becuase the double bond of the unsaturated fatty acid introduces kinks
in the hydrocarbon backbone the fat will not pack into a regular structure and
thus remain fluid at low temperatures. A saturated fat though will pack well and
be a solid a low temperatures.
Fats play important role in energy storage and as insulating molecules. Per gram,
fats contain twice as much energy as carbohydrates. Layers of fat also surround
the vital organs of animals to provide cushion them, insulation is also provide by
layers of under the skin of animals.
Phospholipids
Phospholipids contain only two fatty acid tails attached to a glycerol head. This
occurs by a condensation reaction similar to the one discussed above. The third
alcohol group of the glycerol is attached to a phoshpate molecule. The phoshate
group is then attached to other small moluecules such as choline. The phosphate
group along with the glycerol group make the head of the phospholipid
hydrophillic, whereas the fatty acid tail is hydrophobic. Thus phospholipids are
amphipatic: water loving and water hating. When phospholipids are in an
aqueous solution they will self assemble into micelles or bilayers, structures that
exclude water molecules from the hydrophobic tails while keeping the
hydrophillic head in contact with the aqueous solution.
Phospholipids serve a major function in the cells of all organisms: they form the
phospholipid membranes that surrounds the cell and intracellular structures
such as the mitochondria. The cell membrane is a fluid, semi-permeable bilayer
that seperates the cell's contents of from the environment, see animation below.
The membrane is fluid at physiological temperatures and allows cells to change
shape due to physical constraints or changing cellular volumes. The phospholipid
membrane allows free difusion of some small molecules such as oxygen, carbon
dioxide, and small hydrocarbons, but not water, charged ions, or other larger
molecules such as glucose. This semi-permeable nature of the membrane allows
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the cell to maintain the composition of the cytosol independent of the external
environm
Steroids
The steroids are from lipid family and based on a molecule with four fused
carbon rings. This plays an important role in many hormones of animals and
cholesterol. Cholesterol is an important component of the cell membrane in
animals and functions to maintain membrane fluidity becuase it prevents packing
of the fatty acid tails.
The Fluid Quality of Membranes :

To keep the membrane fluid at physiological temperatures the cell alters the
composition of the phospholipids. The right ratio of saturated to unsaturated
fatty acids keeps the membrane fluid at any temperature conducive to life. For
example winter wheat responds to decreasing temperatures by increasing the
amount of unsaturated fatty acids in cell membranes. In animal cells cholesterol
helps to prevent the packing of fatty acid tails and thus lowers the requiremnt of
unsaturated fatty acids. This helps maintain the fluid nature of the cell membrane
without it becomming too liquid at body temperature. The fluidity of the
membrane is demonstrated in the following animation. The lipids in the
membrane are in random bulk flow moving about 22 µm (micrometers) per
second. Phospholipids freely move in the same layer of the membrane and rarely
flip to the other layer. Flipping rarely occurs because flipping requires the
hyrophillic head to enter the hydrophobic region of the bilayer.
The Mosaic Quality of Membranes
Proteins :
Because the cell membrane is only semi-permable the cell needs a way to
communicate with other cells and exchange nutrients with the extracellular space.
These roles are primarily filled by proteins. Proteins are a seperate class of
molecules unrelated to the lipids and are composed of amino acids. Membrane
proteins are classified into two major categories, integral proteins and peripheral
proteins. Integral proteins are transmembrane proteins, with hydrophobic
regions that completely span the hydrophobic interior of the membrane. The
parts of the protein exposed to the interior and exterior of the cell are
hydrophillic. Integral proteins can serve as pores that selectively allow ions or
nutrients into the cell. They also transmit signals into and out of the cell. Unlike
intergral proteins that span the membrane, peripheral proteins reside on only one
side of the membrane and are often attached to integral proteins.Some peripheral
proteins serve as anchor points for the cytoskeleton or extracellular fibers.
Proteins are much larger than lipids and move more slowly, but some do move in
seemingly directed manner while others drift.
Carbohydrates :
The extracellular surface of the cell membrane is decorated with carbohydrate
groups attached to lipids, glycolipids, or proteins, glycoproteins. These short
carbohydrates, or oligosaccharides, are usually chains of 15 or fewer sugar
molecules. Oligosaccharides give a cell identity (i.e., distinguishing self from non-
self) and are the distinguishing factor in human blood types and transplant
rejection.
Membranes are asymmetric :
As discussed above and can be seen in the picture, we can conclude that the cell
membrane is asymmetric. The extracellular face of the membrane is in contact
with the extracellular matrix. The extracellular side of the membrane contains
oligosaccharides that distinguish the cell as self. It also possesses the end of
integral proteins that interact with signals from other cells and sense the
extracellular environment. The inner membrane is in contact the contents of the
cell. This side of the membrane anchors to the cytoskeleton and contains the end
of integral proteins that relay signals received on the external side.
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Summary: Membranes as Mosaics of Structure and Function :
The biological membrane is a group of many different proteins embedded in the
fluid matrix of the lipid bilayer. The lipid bilayer is the main fabric of the
membrane, and its structure creates a semi-permeable membrane. The
hydrophobic core impedes the difusion of hydrophilic structures, such as ions
and polar molecules but allows hydrophobic molecules, which can dissolve in the
membrane, cross it with ease. Proteins determine most of the membrane's specific
functions. The plasma membrane and the membranes of the various organelles
each have unique collections of proteins.
The cell membrane functions as a semi-permeable barrier, allowing a very few
molecules across it while fencing the majority of organically produced chemicals
inside the cell. Electron microscopic examinations of cell membranes have led to
the development of the lipid bilayer model (also referred to as the fluid-mosaic
model).
Cell Membrane Transport
Q.2 Write a short note on passive transport.

Ans. Passive transport is one of the cellular process in which molecules and other
substances move across the membranes.
In the processes of passive there is no involvement of any chemical energy so it is
different from active transport in this manner. Passive transport relies on the
innate permeability of the cell membrane and its component proteins and lipids.
There are four main types of passive transport:
Diffusion :-
Diffusion describes the spread of particles through random motion from regions
of higher concentration to regions of lower concentration. The time dependence of
the statistical distribution in space is given by the diffusion equation. The concept
of diffusion is tied to that of mass transfer driven by a concentration gradient.
Diffusion is invoked in the social sciences to describe the spread of ideas.
Facilitative Diffusion:-
Facilitated diffusion, also called carrier-mediated diffusion, is the movement of
molecules across the cell membrane via special transport proteins that are
embedded within the cellular membrane. Many large molecules, such as glucose,
are insoluble in lipids and too large to fit through the membrane pores. Therefore,
it will bind with its specific carrier proteins, and the complex will then be bonded
to a receptor site and moved through the cellular membrane. Bear in mind,
however, that facilitated diffusion is a passive process, and the solutes still move
down the concentration gradient
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Filtration :-
Molecules across the cell membrane due to hydrostatic pressure generated by the
cardiovascular system. Depending on the size of the membrane pores, only
solutes of a certain size may pass through it. For example, the membrane pores of
the Bowman's capsule in the kidneys are very small, and only albumins, the
smallest of the proteins, have any chance of being filtered through. On the other
hand, the membrane pores of liver cells are extremely large, to allow a variety of
solutes to pass through and be metabolized.
Osmosis:-
Osmosis is the diffusion of water molecules across a selectively permeable
membrane. The net movement of water molecules through a partially permeable
membrane from a solution of high water potential to an area of low water
potential. A cell with a less negative water potential will draw in water but this
depends on other factors as well such as solute potential (pressure in the cell e.g.
solute molecules) and pressure potential (external pressure e.g. cell wall). Because
the cell wall is a wall around the wall of a cell of a cell like a cell membrane.
Q.3 What do you understand by active transport? Explain it.

Ans. Active transport is an energy mediated process of moving molecules and other
substances across membranes.
Active transport differs from passive transport in that it utilizes chemical energy
in the form of adenosine triphosphate, or ATP, to move molecules against the
concentration gradient from an area of lower concentration to an area of higher
concentration.
There are two types of active transport:
Primary active transport :

Primary active transport directly utilizes chemical energy to move molecules
through a membrane.
The Active transport is the mediated process of moving molecules and other
substances across membranes.
There are two types of active transport:
Secondary active transport :

In secondary active transport, molecules are moved through a membrane as the
direct result of the diffusion of another substance.
The sodium-calcium exchanger, or antiporter, uses the normal diffusion of
sodium ions into the cell to power the transport of calcium out of the cell (and
across a higher concentration gradient).
In another example, the glucose symporter uses the normal diffusion of sodium
ions into the cell to piggyback the transport of glucose into the cell as well.
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Cytoplasmic Organelles
Q.4 Describe structure and functions of mitochondria?

Ans.
Structure
A mitochondrion contains outer and inner membranes composed of phospholipid

bilayers and proteins.The two membranes, however, have different properties.
Because of this double-membraned organization, there are five distinct
compartments within the mitochondrion. They are:
1. the outer mitochondrial membrane,

2. the intermembrane space (the space between the outer and inner membranes),
3. the inner mitochondrial membrane,
4. the cristae space (formed by infoldings of the inner membrane), and
5. the matrix (space within the inner membrane).
Function
Mitochondria are organelles appearing in all eukaryotic cells which produce ATP
as useful energy for the cell by oxidative phosphorylation. The proteins for the
adenosine 5'-triphosphate (ATP)-generating electron transport of the respiration
chain are located in the inner mitochondrial membrane. Mitochondria contain
many enzymes of the citric acid cycle and for fatty acid β-oxidation. Many of
them are coded for by nuclear DNA.
Energy production
The main function of the mitochondrion is the production of energy, in the form
of adenosine triphosphate (ATP). The cell uses this energy to perform the specific
work necessary for cell survival and function.
The raw materials used to generate ATP are the foods that we eat, or tissues
within the body that are broken down in a process called catabolism. The breaking
down of food into simpler molecules such as carbohydrates, fats, and protein is
called metabolism. These molecules are then transferred into the mitochondria,
where further processing occurs. The reactions within the mitochondria produce
specific molecules that can have their electrical charges separated within the inner
mitochondrial membrane. These charged molecules are processed within the five
electron transport chain complexes to finally combine with oxygen to make ATP.
The process of the charged substances combining with oxygen is called oxidation,
while the chemical reaction making ATP is called phosphorylation. The overall
process is called oxidative phosphorylation. The product produced by this process is
ATP.
Programmed cell death :

32
Cell death can occur either by injury due to toxic exposure, by mechanical
damage, or by an orderly process called programmed cell death or apoptosis.
Programmed cell death occurs during development as the organism is pruning
away unwanted, excess cells. It also occurs during infections with viruses, cancer
therapy, or in the immune response to illness. The process of programmed cell
death is another function of mitochondria.
Normally, ATP production is coupled to oxygen consumption. During abnormal
states such as fever, cancer, or stroke, or when dysfunction occurs within the
mitochondria, more oxygen is consumed or required than is actually used to
make ATP. The mitochondria become partially ―uncoupled‖ and produce highly
reactive oxygen species called free radicals. When the production of free radicals
overwhelms the mitochondria’s ability to ―detoxify‖ them, the excess free radicals
damage mitochondrial function by changing the mitochondrial DNA, proteins,
and membranes. As this process continues, it can induce the cell to undergo
apoptosis. Abnormal cell death due to mitochondrial dysfunction can interfere
with organ function.
Cell-specific functions :
Other functions of mitochondria are related to the cell type in which they are
found. Mitochondria are involved in building, breaking down, and recycling
products needed for proper cell functioning. For example, some of the building
blocks of DNA and RNA occur within the mitochondria. Mitochondria are also
involved in making parts of blood and hormones such as estrogen and
testosterone. They are required for cholesterol metabolism, neurotransmitter
metabolism, and detoxification of ammonia in the urea cycle. Thus, if
mitochondria do not function properly, not only energy production but also cell-
specific products needed for normal cell functioning will be affected.
Q-3 What is electron transport system?
Ans Eelectron transport chain (ETC) couples electron transfer between an electron
donor (such as NADH) and an electron acceptor (such as O2) with the transfer of
H+ ions (protons) across a membrane. The resulting electrochemical proton
gradient is used to generate chemical energy in the form of adenosine
triphosphate (ATP). Electron transport chains are the cellular mechanisms used
for extracting energy from sunlight in photosynthesis and also from redox
reactions, such as the oxidation of sugars (respiration).
In chloroplasts, light drives the conversion of water to oxygen and NADP+ to
NADPH with transfer of H+ ions across chloroplast membranes. In mitochondria,
it is the conversion of oxygen to water, NADH to NAD+ and succinate to
fumarate that generates a proton. Electron transport chains are major sites of
premature electron leakage to oxygen, generating superoxide and potentially
resulting in increased oxidative stress.
Electron transport chains in mitochondria

Most eukaryotic cells have mitochondria, which produce ATP from products of
the citric acid cycle, fatty acid oxidation, and amino acid oxidation. At the
mitochondrial inner membrane, electrons from NADH and succinate pass
through the electron transport chain to oxygen, which is reduced to water. The
electron transport chain comprises an enzymatic series of electron donors and
acceptors. Each electron donor passes electrons to a more electronegative
acceptor, which in turn donates these electrons to another acceptor, a process that
continues down the series until electrons are passed to oxygen, the most
electronegative and terminal electron acceptor in the chain. Passage of electrons
between donor and acceptor releases energy, which is used to generate a proton
gradient across the mitochondrial membrane by actively ―pumping‖ protons into
the intermembrane space, producing a thermodynamic state that has the potential
to do work. The entire process is called oxidative phosphorylation, since ADP is
phosphorylated to ATP using the energy of hydrogen oxidation in many steps
34
Four membrane-bound complexes have been identified in mitochondria. Each is
an extremely complex transmembrane structure that is embedded in the inner
membrane. Three of them are proton pumps. The structures are electrically
connected by lipid-soluble electron carriers and water-soluble electron carriers.
The overall electron transport chain:
NADH → Complex I → Q → Complex III → cytochrome c → Complex IV → O2

↑
Complex II
↑
FADH
Complex I
In Complex I (NADH dehydrogenase, also called NADH:ubiquinone

oxidoreductase; EC 1.6.5.3) two electrons are removed from NADH and
transferred to a lipid-soluble carrier, ubiquinone (Q). The reduced product,
ubiquinol (QH2) freely diffuses within the membrane, and Complex I translocates
four protons (H+) across the membrane, thus producing a proton gradient.
Complex I is one of the main sites at which premature electron leakage to oxygen
occurs, thus being one of the main sites of production of harmful superoxide.[3]
The pathway of electrons occurs as follows:
NADH is oxidized to NAD+, by reducing Flavin mononucleotide to FMNH2 in

one two-electron step. FMNH2 is then oxidized in two one-electron steps, through
a semiquinone intermediate. Each electron thus transfers from the FMNH2 to an
Fe-S cluster, from the Fe-S cluster to ubiquinone (Q). Transfer of the first electron
results in the free-radical (semiquinone) form of Q, and transfer of the second
electron reduces the semiquinone form to the ubiquinol form, QH2. During this
process, four protons are translocated from the mitochondrial matrix to the
intermembrane space. [3]
Complex II
In Complex II (succinate dehydrogenase; EC 1.3.5.1) additional electrons are

delivered into the quinone pool (Q) originating from succinate and transferred
(via FAD) to Q. Complex II consists of four protein subunits: SDHA, SDHB,
SDHC, and SDHD. Other electron donors (e.g., fatty acids and glycerol 3-
phosphate) also direct electrons into Q (via FAD).
Complex III
In Complex III (cytochrome bc1 complex; EC 1.10.2.2), the Q-cycle contributes to

the proton gradient by an asymmetric absorption/release of protons. Two
electrons are removed from QH2 at the QO site and sequentially transferred to two
molecules of cytochrome c, a water-soluble electron carrier located within the
intermembrane space. The two other electrons sequentially pass across the
protein to the Qi site where the quinone part of ubiquinone is reduced to quinol.
A proton gradient is formed by two quinol (4H+4e-) oxidations at the Qo site to
form one quinol (2H+2e-) at the Qi site. (in total six protons are translocated: two
protons reduce quinone to quinol and four protons are released from two
ubiquinol molecules).
When electron transfer is reduced (by a high membrane potential or respiratory

inhibitors such as antimycin A), Complex III may leak electrons to molecular
oxygen, resulting in superoxide formation.
Complex IV
In Complex IV (cytochrome c oxidase; EC 1.9.3.1), sometimes called cytochrome

A3, four electrons are removed from four molecules of cytochrome c and
transferred to molecular oxygen (O2), producing two molecules of water. At the
same time, four protons are translocated across the membrane, contributing to the
proton gradient. The activity of cytochrome c oxidase is inhibited by cyanide
Q.4 Write a short note on Endoplasmic Reticulum.

Ans. Endoplasmic reticulum (ER) is a membranous labyrinth so extensive that it
accounts for more than half the total membrane in many eukaryotic cells. The
word endoplasmic means "within" the cytoplasm, and the word reticulum is
derived from a word meaning "network." The ER consists of a network of
membranous tubules and sacs called cisternae. The ER membrane separates its
internal compartment, the cisternal space, from the cystosol. Because the ER
membrane is continuous with the nuclear envelope, the space between the two
membranes of the envelope is continuous with the cisternal space of the ER.
There are two specific regions of ER that are different in structure and function.
The two forms are rough ER and smooth ER. The rough ER appears rough
because of ribosomes. The ribosomes are attached to ER making appear bumpy.
36
Smooth ER has its name simply beacuse its cytoplasmic surface does not contain
ribosomes. Rough ER specializes in protein synthesis. The endoplasmic reticulum
is a transport system. Protein molecules move from the rough ER into the smooth
ER, which then sensds them enclosed within the vesicles usually to the Golgi
complex. The smooth ER of various cell types functions in diverse metabolic
processes, including the synthesis of lipids, carbohydrate metabolism, and the
detoxification of drugs and other poisons. Enzymes in the smooth ER are
important to the synthesis of fats, phospolipids, steroids, and other lipids. The
enzymes detoxify drugs and other poisons, especially in the liver cells. This
makes it easier to flush the toxic out of the body.
Q.5 What are Ribosomes?

Ans. Ribosomes are the protein-synthesizing complex of the cell and are present in all
organisms from bacteria to man to green plants. Ribosomes have two subunits;
the smaller subunit, 30 S for the bacterial and 40 S for the eukaryotic ribosome,
containing a single ribosomal RNA and 21–33 proteins (depending on the
organism), 15 of which share homology between 30 S and 40 S ribosomal
subunits.1 The small ribosomal subunit is responsible for initial interactions with
mRNA, and the correct positioning of the ribosome for translation start. mRNA
decoding and tRNA fidelity verification is carried out by the small subunit.2 The
larger subunit of ribosomes, 50 S for the bacterial and 60 S for the eukaryotic
ribosome, is composed of two orthree rRNAs and from 33 to 47 proteins, with 17
of these proteins conserved between 50 S and 60 S ribosomal subunits.1 The large
subunit houses the peptidyl transferase reaction center and the nascent
polypeptide exit tunnel.
38
Section B
Nucleus
Q.1 What do you know about chromosome?

Ans. A chromosome is an organized structure of DNA and protein found in cells. It is
a single piece of coiled DNA containing many genes, regulatory elements and
other nucleotide sequences. Chromosomes also contain DNA-bound proteins,
which serve to package the DNA and control its functions.
Chromosomes vary widely between different organisms. The DNA molecule may
be circular or linear, and can be composed of 100,000 to 10,000,000,000[1]
nucleotides in a long chain. Typically, eukaryotic cells (cells with nuclei) have
large linear chromosomes and prokaryotic cells (cells without defined nuclei)
have smaller circular chromosomes, although there are many exceptions to this
rule. Also, cells may contain more than one type of chromosome; for example,
mitochondria in most eukaryotes and chloroplasts in plants have their own small
chromosomes.
In eukaryotes, nuclear chromosomes are packaged by proteins into a condensed

structure called chromatin. This allows the very long DNA molecules to fit into
the cell nucleus. The structure of chromosomes and chromatin varies through the
cell cycle. Chromosomes are the essential unit for cellular division and must be
replicated, divided, and passed successfully to their daughter cells so as to ensure
the genetic diversity and survival of their progeny. Chromosomes may exist as
either duplicated or unduplicated. Unduplicated chromosomes are single linear
strands, whereas duplicated chromosomes contain two identical copies (called
chromatids) joined by a centromere.
Compaction of the duplicated chromosomes during mitosis and meiosis results in

the classic four-arm structure (pictured to the right). Chromosomal recombination
plays a vital role in genetic diversity. If these structures are manipulated
incorrectly, through processes known as chromosomal instability and
translocation, the cell may undergo mitotic catastrophe and die, or it may
unexpectedly evade apoptosis leading to the progression of cancer.
Q.2 Describe cell division.

Ans. Cell division is the process by which a parent cell divides into two or more
daughter cells.Cell division is usually a small segment of a larger cell cycle. This
type of cell division in eukaryotes is known as mitosis, and leaves the daughter
cell capable of dividing again. The corresponding sort of cell division in
prokaryotes is known as binary fission. In another type of cell division present
only in eukaryotes, called meiosis, a cell is permanently transformed into a
gamete and may not divide again until fertilization. Right before the parent cell
splits, it undergoes DNA replication.
40
Q.3 Write a short note on lampbrush chromosome.

Ans. A Lampbrush chromosome (first seen by Flemming in 1882) is the largest
chromosome known and is found in the amphibian oocytes (immature eggs).
Lampbrush chromosomes occur during the diplotene stage of meiosis I. They are
meiotic bivalents, each consisting of 2 sister chromatids. Lampbrush
chromosomes are clearly visible even in the light microscope, where they are seen
to be organized into a series of large chromatin loops emanating from a linear
chromosomal axis.
A given loop always contains the same DNA sequence, and it remains extended
in the same manner as the oocyte grows. These chromosomes are producing large
amounts of RNA for the oocyte, and most of the genes present in the DNA loops
are being actively expressed. The majority of the DNA, however, is not in loops
but remains highly condensed in the chromomeres on the axis, where genes are
generally not expressed. It is thought that the interphase chromosomes of all
eucaryotes are similarly arranged in loops. Although these loops are normally too
small and fragile to be easily observed in a light microscope, other methods can
be used to infer their presence. For example, it has become possible to assess the
frequency with which two loci along an interphase chromosome are paired with
each other, thus revealing candidates for the sites on chromatin that form the
closely apposed bases of loop structures. These experiments and others suggest
that the DNA in human chromosomes is organized into loops of different lengths.
A typical loop might contain between 50,000 and 200,000 nucleotide pairs of
DNA, although loops of a million nucleotide pairs have also been suggested.
Giant chromosomes in the lampbrush form are useful model for studying
chromosome organization and gene expression during meiotic prophase, since
they allow the individual transcription units to be visualized.
Q.4 Write a note on polytene chromosome.

Ans. Polytene chromosomes are giant chromosomes common to many dipteran (two-
winged) flies. They begin as normal chromosomes, but through repeated rounds
of DNA replication without any cell division (called endoreplication), they
become large, banded chromosomes (see figure). For unknown reasons, the
centromeric regions of the chromosomes do not endoreplicate very well. As a
result, the centromeres of all the chromosomes bundle together in a mass called
the chromocenter.
Polytene chromosomes are usually found in the larvae, where it is believed these
many-replicated chromosomes allow for much faster larval growth than if the
cells remained diploid. Simply because each cell now has many copies of each
gene, it can transcribe at a much higher rate than with only two copies in diploid
cells.
The polytene chromosomes at the right are from the salivary glands of the fruit
fly Drosophila melanogaster. the bands on each chromosome are like a road map,
unique to each chromosome and well defined enough to allow high resolution
42
mapping of each chromosome. The Drosophila Genome Project uses polytene
chromosomes as a framework for the map.
Nucleic Acid
Q-1 What is DNA? Explain with suitable diagram.

Ans. Deoxyribonucleic acid is a nucleic acid containing the genetic instructions used
in the development and functioning of all known living organisms (with the
exception of RNA viruses). The DNA segments carrying this genetic information
are called genes. Likewise, other DNA sequences have structural purposes, or are
involved in regulating the use of this genetic information. Along with RNA and
proteins, DNA is one of the three major macromolecules that are essential for all
known forms of life.
DNA consists of two long polymers of simple units called nucleotides, with
backbones made of sugars and phosphate groups joined by ester bonds. These
two strands run in opposite directions to each other and are therefore anti-
parallel. Attached to each sugar is one of four types of molecules called
nucleobases (informally, bases). It is the sequence of these four nucleobases along
the backbone that encodes information. This information is read using the genetic
code, which specifies the sequence of the amino acids within proteins. The code is
read by copying stretches of DNA into the related nucleic acid RNA in a process
called transcription.
Within cells DNA is organized into long structures called chromosomes. During
cell division these chromosomes are duplicated in the process of DNA replication,
providing each cell its own complete set of chromosomes. Eukaryotic organisms
(animals, plants, fungi, and protists) store most of their DNA inside the cell
nucleus and some of their DNA in organelles, such as mitochondria or
chloroplasts.[1] In contrast, prokaryotes (bacteria and archaea) store their DNA
only in the cytoplasm. Within the chromosomes, chromatin proteins such as
histones compact and organize DNA. These compact structures guide the
interactions between DNA and other proteins, helping control which parts of the
DNA are transcribed.
44
Grooves
Twin helical strands form the DNA backbone. Another double helix may be
found by tracing the spaces, or grooves, between the strands. These voids are
adjacent to the base pairs and may provide a binding site. As the strands are not
directly opposite each other, the grooves are unequally sized. One groove, the
major groove, is 22 Å wide and the other, the minor groove, is 12 Å wide.[14] The
narrowness of the minor groove means that the edges of the bases are more
accessible in the major groove. As a result, proteins like transcription factors that
can bind to specific sequences in double-stranded DNA usually make contacts to
the sides of the bases exposed in the major groove.[15] This situation varies in
unusual conformations of DNA within the cell , but the major and minor grooves
are always named to reflect the differences in size that would be seen if the DNA
is twisted back into the ordinary B form.
Q.2 What do you understand by RNA?
Ans. Ribonucleic acid is one of the three major macromolecules (along with DNA and
proteins) essential for all known forms of life. Like DNA, RNA is made up of a
long chain of components called nucleotides. Each nucleotide consists of a
nucleobase, a ribose sugar, and a phosphate group. The sequence of nucleotides
allows RNA to encode genetic information. All cellular organisms use messenger
RNA (mRNA) to carry the genetic information that directs the synthesis of
proteins. In addition, many viruses use RNA instead of DNA as their genetic
material.
Some RNA molecules play an active role in cells by catalyzing biological

reactions, controlling gene expression, or sensing and communicating responses
to cellular signals. One of these active processes is protein synthesis, a universal
function whereby mRNA molecules direct the assembly of proteins on ribosomes.
This process uses transfer RNA (tRNA) molecules to deliver amino acids to the
ribosome, where ribosomal RNA (rRNA) links amino acids together to form
proteins.
The chemical structure of RNA is very similar to that of DNA, with two
differences: (a) RNA contains the sugar ribose, while DNA contains the slightly
different sugar deoxyribose (a type of ribose that lacks one oxygen atom), and (b)
RNA has the nucleobase uracil while DNA contains thymine. Unlike DNA, most
RNA molecules are single-stranded and can adopt very complex three-
dimensional structures.
Structure
46
Each nucleotide in RNA contains a ribose sugar, with carbons numbered 1'
through 5'. A base is attached to the 1' position, in general, adenine (A), cytosine
(C), guanine (G), or uracil (U). Adenine and guanine are purines, cytosine, and
uracil are pyrimidines. A phosphate group is attached to the 3' position of one
ribose and the 5' position of the next. The phosphate groups have a negative
charge each at physiological pH, making RNA a charged molecule (polyanion).
The bases may form hydrogen bonds between cytosine and guanine, between
adenine and uracil and between guanine and uracil.[4] However, other
interactions are possible, such as a group of adenine bases binding to each other
in a bulge, or the GNRA tetraloop that has a guanine–adenine base-pair.
An important structural feature of RNA that distinguishes it from DNA is the

presence of a hydroxyl group at the 2' position of the ribose sugar. The presence
of this functional group causes the helix to adopt the A-form geometry rather
than the B-form most commonly observed in DNA. This results in a very deep
and narrow major groove and a shallow and wide minor groove.[7] A second
consequence of the presence of the 2'-hydroxyl group is that in conformationally
flexible regions of an RNA molecule (that is, not involved in formation of a
double helix), it can chemically attack the adjacent phosphodiester bond to cleave
the backbone.
Secondary structure of a telomerase RNA.
RNA is transcribed with only four bases (adenine, cytosine, guanine and uracil),
but these bases and attached sugars can be modified in numerous ways as the
RNAs mature. Pseudouridine (Ψ), in which the linkage between uracil and ribose
is changed from a C–N bond to a C–C bond, and ribothymidine (T) are found in
various places (the most notable ones being in the TΨC loop of tRNA).[10] Another
notable modified base is hypoxanthine, a deaminated adenine base whose
nucleoside is called inosine (I). Inosine plays a key role in the wobble hypothesis
of the genetic code.[11]
There are nearly 100 other naturally occurring modified nucleosides, of which
pseudouridine and nucleosides with 2'-O-methylribose are the most common.
The specific roles of many of these modifications in RNA are not fully
understood. However, it is notable that, in ribosomal RNA, many of the post-
transcriptional modifications occur in highly functional regions, such as the
peptidyl transferase center and the subunit interface, implying that they are
important for normal function.
The functional form of single-stranded RNA molecules, just like proteins,

frequently requires a specific tertiary structure. The scaffold for this structure is
provided by secondary structural elements that are hydrogen bonds within the
molecule. This leads to several recognizable "domains" of secondary structure like
hairpin loops, bulges, and internal loops. Since RNA is charged, metal ions such
as Mg2+ are needed to stabilise many secondary and tertiary structures.
Synthesis
Synthesis of RNA is usually catalyzed by an enzyme—RNA polymerase—using

DNA as a template, a process known as transcription. Initiation of transcription
begins with the binding of the enzyme to a promoter sequence in the DNA
(usually found "upstream" of a gene). The DNA double helix is unwound by the
helicase activity of the enzyme. The enzyme then progresses along the template
strand in the 3’ to 5’ direction, synthesizing a complementary RNA molecule with
elongation occurring in the 5’ to 3’ direction. The DNA sequence also dictates
where termination of RNA synthesis will occur.
RNAs are often modified by enzymes after transcription. For example, a poly(A)
tail and a 5' cap are added to eukaryotic pre-mRNA and introns are removed by
the spliceosome.
There are also a number of RNA-dependent RNA polymerases that use RNA as
their template for synthesis of a new strand of RNA. For instance, a number of
RNA viruses (such as poliovirus) use this type of enzyme to replicate their genetic
material. Also, RNA-dependent RNA polymerase is part of the RNA interference
pathway in many organisms.
Types of RNA
Messenger RNA (mRNA) is the RNA that carries information from DNA to the
ribosome, the sites of protein synthesis (translation) in the cell. The coding
48
sequence of the mRNA determines the amino acid sequence in the protein that is
produced. Many RNAs do not code for protein however (about 97% of the
transcriptional output is non-protein-coding in eukaryotes
These so-called non-coding RNAs ("ncRNA") can be encoded by their own genes
(RNA genes), but can also derive from mRNA introns. The most prominent
examples of non-coding RNAs are transfer RNA (tRNA) and ribosomal RNA
(rRNA), both of which are involved in the process of translation.[1] There are also
non-coding RNAs involved in gene regulation, RNA processing and other roles.
Certain RNAs are able to catalyse chemical reactions such as cutting and ligating
other RNA molecules, and the catalysis of peptide bond formation in the
ribosome; these are known as ribozymes.
In translation
Messenger RNA (mRNA) carries information about a protein sequence to the

ribosomes, the protein synthesis factories in the cell. It is coded so that every three
nucleotides (a codon) correspond to one amino acid. In eukaryotic cells, once
precursor mRNA (pre-mRNA) has been transcribed from DNA, it is processed to
mature mRNA. This removes its introns—non-coding sections of the pre-mRNA.
The mRNA is then exported from the nucleus to the cytoplasm, where it is bound
to ribosomes and translated into its corresponding protein form with the help of
tRNA. In prokaryotic cells, which do not have nucleus and cytoplasm
compartments, mRNA can bind to ribosomes while it is being transcribed from
DNA. After a certain amount of time the message degrades into its component
nucleotides with the assistance of ribonucleases.[20]
Transfer RNA (tRNA) is a small RNA chain of about 80 nucleotides that transfers
a specific amino acid to a growing polypeptide chain at the ribosomal site of
protein synthesis during translation. It has sites for amino acid attachment and an
anticodon region for codon recognition that binds to a specific sequence on the
messenger RNA chain through hydrogen bonding.[25]
Ribosomal RNA (rRNA) is the catalytic component of the ribosomes. Eukaryotic

ribosomes contain four different rRNA molecules: 18S, 5.8S, 28S and 5S rRNA.
Three of the rRNA molecules are synthesized in the nucleolus, and one is
synthesized elsewhere. In the cytoplasm, ribosomal RNA and protein combine to
form a nucleoprotein called a ribosome. The ribosome binds mRNA and carries
out protein synthesis. Several ribosomes may be attached to a single mRNA at
any time.[20] Nearly all the RNA found in a typical eukaryotic cell is rRNA.
Transfer-messenger RNA (tmRNA) is found in many bacteria and plastids. It
tags proteins encoded by mRNAs that lack stop codons for degradation and
prevents the ribosome from stalling.[27]
Reverse transcribing viruses replicate their genomes by reverse transcribing DNA

copies from their RNA; these DNA copies are then transcribed to new RNA.
Retrotransposons also spread by copying DNA and RNA from one another,[50]
and telomerase contains an RNA that is used as template for building the ends of
eukaryotic chromosomes.[51]
Double-stranded RNA
Double-stranded RNA (dsRNA) is RNA with two complementary strands, similar

to the DNA found in all cells. dsRNA forms the genetic material of some viruses
(double-stranded RNA viruses). Double-stranded RNA such as viral RNA or
siRNA can trigger RNA interference in eukaryotes, as well as interferon response
in vertebrates.
Q.3 What do you understand by genetic code?

Ans. The sequence of nucleotides in DNA or RNA that determines the specific amino
acid sequence in the synthesis of proteins. It is the biochemical basis of heredity
and nearly universal in all organisms. The genetic code is the set of rules by
which information encoded in genetic material (DNA or RNA sequences) is
translated into proteins (amino acid sequences) by living cells. A more precise
term for the concept might be "genetic cipher". The code defines a mapping
between tri-nucleotide sequences, called codons, and amino acids. A triplet codon
in a nucleic acid sequence usually specifies a single amino acid (though in some
cases the same codon triplet in different locations can code unambiguously for
two different amino acids, the correct choice at each location being determined by
context). Because the vast majority of genes are encoded with exactly the same
code (see the RNA codon table), this particular code is often referred to as the
canonical or standard genetic code, or simply the genetic code, though in fact
there are many variant codes. Thus the canonical genetic code is not universal.
For example, in humans, protein synthesis in mitochondria relies on a genetic
code that varies from the canonical code.
50
It is important to know that not all genetic information is stored using the genetic
code. All organisms' DNA contain regulatory sequences, intergenic segments, and
chromosomal structural areas that can contribute greatly to phenotype but
operate using distinct sets of rules that may or may not be as straightforward as
the codon-to-amino acid paradigm that usually underlies the genetic code (see
epigenetics).
Transfer of information via the genetic code :
The genome of an organism is inscribed in DNA, or in some viruses RNA. The
portion of the genome that codes for a protein or an RNA is referred to as a gene.
Those genes that code for proteins are composed of tri-nucleotide units called
codons, each coding for a single amino acid. Each nucleotide sub-unit consists of
a phosphate, deoxyribose sugar and one of the 4 nitrogenous nucleotide bases.
The purine bases adenine (A) and guanine (G) are larger and consist of two
aromatic rings. The pyrimidine bases cytosine (C) and thymine (T) are smaller
and consist of only one aromatic ring. In the double-helix configuration, two
strands of DNA are joined to each other by hydrogen bonds in an arrangement
known as base pairing. These bonds almost always form between an adenine base
on one strand and a thymine on the other strand and between a cytosine base on
one strand and a guanine base on the other. This means that the number of A and
T residues will be the same in a given double helix, as will the number of G and C
residues. In RNA, thymine (T) is replaced by uracil (U), and the deoxyribose is
substituted by ribose.
Each protein-coding gene is transcribed into a template molecule of the related
polymer RNA, known as messenger RNA or mRNA. This, in turn, is translated
on the ribosome into an amino acid chain or polypeptide. The process of
translation requires transfer RNAs specific for individual amino acids with the
amino acids covalently attached to them, guanosine triphosphate as an energy
source, and a number of translation factors. tRNAs have anticodons
complementary to the codons in mRNA and can be "charged" covalently with
amino acids at their 3' terminal CCA ends. Individual tRNAs are charged with
specific amino acids by enzymes known as aminoacyl tRNA synthetases, which
have high specificity for both their cognate amino acids and tRNAs. The high
specificity of these enzymes is a major reason why the fidelity of protein
translation is maintained.
There are 4³ = 64 different codon combinations possible with a triplet codon of
three nucleotides; all 64 codons are assigned for either amino acids or stop signals
during translation. If, for example, an RNA sequence, UUUAAACCC is
considered and the reading-frame starts with the first U (by convention, 5' to 3'),
there are three codons, namely, UUU, AAA and CCC, each of which specifies one
amino acid. This RNA sequence will be translated into an amino acid sequence,
three amino acids long. A comparison may be made with computer science,
where the codon is similar to a word, which is the standard "chunk" for handling
data (like one amino acid of a protein), and a nucleotide is similar to a bit, in that
it is the smallest unit.
The standard genetic code is shown in the following tables. Table 1 shows what
amino acid each of the 64 codons specifies. Table 2 shows what codons specify
each of the 20 standard amino acids involved in translation. These are called
forward and reverse codon tables, respectively. For example, the codon AAU
represents the amino acid asparagine, and UGU and UGC represent cysteine
(standard three-letter designations, Asn and Cys, respectively).
Q.4 Describe protein synthsis.

Ans. Protein biosynthesis is the process in which cells build or manufacture proteins.
The term is sometimes used to refer only to protein translation but more often it
refers to a multi-step process, beginning with amino acid synthesis and
transcription of nuclear DNA into messenger RNA, which is then used as input
for translation.
52
The cistron DNA is transcribed into a variety of RNA intermediates. The last
version is used as a template in synthesis of a polypeptide chain. Proteins can
often be synthesized directly from genes by translating mRNA. When a protein
must be available on short notice or in large quantities, a protein precursor is
produced. A proprotein is an inactive protein containing one or more inhibitory
peptides that can be activated when the inhibitory sequence is removed by
proteolysis during posttranslational modification. A preprotein is a form that
contains a signal sequence (an N-terminal signal peptide) that specifies its
insertion into or through membranes, i.e., targets them for secretion. The signal
peptide is cleaved off in the endoplasmic reticulum.[1] Preproproteins have both
sequences (inhibitory and signal) still present.
For synthesis of protein, a succession of tRNA molecules charged with

appropriate amino acids have to be brought together with an mRNA molecule
and matched up by base-pairing through their anti-codons with each of its
successive codons. The amino acids then have to be linked together to extend the
growing protein chain, and the tRNAs, relieved of their burdens, have to be
released. This whole complex of processes is carried out by a giant
multimolecular machine, the ribosome, formed of two main chains of RNA, called
ribosomal RNA (rRNA), and more than 50 different proteins. This molecular
juggernaut latches onto the end of an mRNA molecule and then trundles along it,
capturing loaded tRNA molecules and stitching together the amino acids they
carry to form a new protein chain.
Transcription:
Simply stated transcription is the synthesis of RNA from a DNA template. Also
important is the concept that transcription, whether prokaryotic or eukaryotic,
has three main events.
1. Initiation - binding of RNA polymerase to double-stranded DNA; this step

involves a transition to single-strandedness in the region of binding; RNA
polymerase binds at a sequence of DNA called the promoter. Initiation is the
most important step in gene expression!!!
2. Elongation - the covalent addition of nucleotides to the 3' end of the growing
polynucleotide chain; this involves the development of a short stretch of DNA
that is transiently single-stranded
3. Termination - the recognition of the transcription termination sequence and the
release of RNA polymerase
Although transcription is performed by RNA Polymerase, the enzyme needs
other proteins to produce the transcript. These factors are either associated
directly with RNA Polymerase or add in building the actual transcription
apparatus. The general term for these associated proteins is transcription factor.
Transcription factor - any protein other than RNA Polymerase that is required
for transcription
Functions of Transcription Factors
bind to RNA Polymerase

bind another transcription factor
bind to cis-acting DNA sequences
RNA Polymerase and the group of protein that directly interact with it are called the
basal transcription apparatus. This is the apparatus that is directly responsible for
transcription.
Basal transcription apparatus - RNA polymerase + general factors; both needed to

initiate transcription
Other factors, those that interact directly or through a coactivator with the proteins of
the basal transcription apparatus, are also important for transcription. These generally
have a positive effect on transcription, but occasionally they can repress gene expression
through transcripion. These factors are called upstream factors.
Upstream factors - ubiquitous factors that increase the efficiency of transcription

initiation; set of factors unique to each promoter
Functions of Upstream Factors
influence the initiation of transcription by contacting members of the basal

apparatus
promotes assembly of the apparatus
may bind coactivators that interact with the basal apparatus
typically bind to TFIID, TFIIB or TFIIA
TFIID provides various TAFs that can be interacted with; if TAFs are unique to a
specific promoter, then the interaction can control promoter specific transcription
most interactions are positive in nature and induce transcription
repressors may prevent the building of the basal apparatus
54
Finally, some factors are turned in a temporal or spatial manner, or directly in
response to the environment. These factors provide the final link in controlling
gene expression. These are termed inducible factors.
Inducible factors - act in the same manner as an upstream factor but their
synthesis is regulated in a temporal or spatial manner
Given all of the discussion regarding the basal transcription apparatus, and
upstream and inducible factors, we can know arrive at a definition of a promoter.
The definition is reflects the interaction of the all of the important proteins and
the DNA to which the bind.
Promoter - all the DNA sequences containing binding sites for RNA polymerase
and the transcription factors necessary for normal transcription
Translation:
1. Initiation
The small subunit of the ribosome binds to a site "upstream" (on the 5' side) of
the start of the message.
It proceeds downstream (5' -> 3') until it encounters the start codon AUG. (The
region between the mRNA cap and the AUG is known as the 5'-untranslated
region [5'-UTR].)
Here it is joined by the large subunit and a special initiator tRNA.
The initiator tRNA binds to the P site (shown in pink) on the ribosome.
In eukaryotes, initiator tRNA carries methionine (Met). (Bacteria use a
modified methionine designated fMet.)
2. Elongation
An aminoacyl-tRNA (a tRNA covalently bound to its amino acid) able to base

pair with the next codon on the mRNA arrives at the A site (green) associated
with:
o an elongation factor (called EF-Tu in bacteria; EF-1 in eukaryotes)
o GTP (the source of the needed energy)
The preceding amino acid (Met at the start of translation) is covalently linked
to the incoming amino acid with a peptide bond (shown in red).
The initiator tRNA is released from the P site.
The ribosome moves one codon downstream.
This shifts the more recently-arrived tRNA, with its attached peptide, to the P
site and opens the A site for the arrival of a new aminoacyl-tRNA.
This last step is promoted by another protein elongation factor (called EF-G in
bacteria; EF-2 in eukaryotes) and the energy of another molecule of GTP.
Note: the initiator tRNA is the only member of the tRNA family that can bind
directly to the P site. The P site is so-named because, with the exception of
initiator tRNA, it binds only to a peptidyl-tRNA molecule; that is, a tRNA with
the growing peptide attached.
The A site is so-named because it binds only to the incoming aminoacyl-tRNA;

that is the tRNA bringing the next amino acid. So, for example, the tRNA that
brings Met into the interior of the polypeptide can bind only to the A site.
3. Termination
The end of translation occurs when the ribosome reaches one or more STOP
codons (UAA, UAG, UGA). (The nucleotides from this point to the poly(A) tail
make up the 3'-untranslated region [3'-UTR] of the mRNA.)
There are no tRNA molecules with anticodons for STOP codons. However,
protein release factors recognize these codons when they arrive at the A site.
Binding of these proteins —along with a molecule of GTP — releases the
polypeptide from the ribosome. The ribosome splits into its subunits, which
can later be reassembled for another round of protein synthesis.
56
Q.3 What is wobble hypothesis?
Ans Wobble Effect
The Wobble effect hypothesis discovered by Frances Crick, states that rules of
base pairing are relaxed at the third position, so that a base can pair with more
than one complementary base. The Wobble Effect, or sloppy pairing is where the
5' end of an anticodon can shift or "wobble" to allow pairing with more than one
nitrogen base on the codon. This happens to minimize the total number of tRNA
molecules necessary for translation. Because there are a huge number of three
base combinations, if wobble did not exist, there would have to be an equal
number of tRNA for every combination. With wobble, though, one tRNA
molecule can bindwith multiple codons, as long as the first two bases in the tRNA
are correct. Notable Wobbles 5'end of anticodon Pairs with 3' end of codon G > U
or C C > G A > U U > A or G I > U,C, or A
Section C
Mendelism
Q.1 Describe Mendel's Laws.

Ans. The principles of heredity were written by the Augustinian monk Gregor Mendel
in 1865. Mendel discovered that by crossing white flower and purple flower
plants, the result was not a blend. Rather than being a mix of the two, the
offspring was purple flowered. He then conceived the idea of heredity units,
which he called "factors", one which is a recessive characteristic and the other
dominant. Mendel said that factors, later called genes, normally occur in pairs in
ordinary body cells, yet segregate during the formation of sex cells. Each member
of the pair becomes part of the separate sex cell. The dominant gene, such as the
purple flower in Mendel's plants, will hide the recessive gene, the white flower.
After Mendel self-fertilized the F1 generation and obtained the 3:1 ratio, he
correctly theorized that genes can be paired in three different ways for each trait;
AA, aa, and Aa. The capital A represents the dominant factor and lowercase a
represents the recessive. (The last combination listed above, Aa, will occur
roughly twice as often as each of the other two, as it can be made in two different
ways, Aa or aA.)
Mendel stated that each individual has two factors for each trait, one from each
parent. The two factors may or may not contain the same information. If the two
factors are identical, the individual is called homozygous for the trait. If the two
factors have different information, the individual is called heterozygous. The
alternative forms of a factor are called alleles. The genotype of an individual is
made up of the many alleles it possesses. An individual's physical appearance, or
phenotype, is determined by its alleles as well as by its environment. An
individual possesses two alleles for each trait; one allele is given by the female
parent and the other by the male parent. They are passed on when an individual
matures and produces gametes: egg and sperm. When gametes form, the paired
alleles separate randomly so that each gamete receives a copy of one of the two
alleles. The presence of an allele doesn't promise that the trait will be expressed in
58
the individual that possesses it. In heterozygous individuals the only allele that is
expressed is the dominant. The recessive allele is present but its expression is
hidden.
Mendel summarized his findings in two laws; the Law of Segregation and the
Law of Independent Assortment.
Law of Segregation (The "First Law") :

The Law of Segregation states that when any individual produces gametes, the
copies of a gene separate, so that each gamete receives only one copy. A gamete
will receive one allele or the other. The direct proof of this was later found when
the process of meiosis came to be known. In meiosis the paternal and maternal
chromosomes get separated and the alleles with the characters are segregated into
two different gametes.
Law of Independent Assortment (The "Second Law") :

The Law of Independent Assortment, also known as "Inheritance Law", states that
alleles of different genes assort independently of one another during gamete
formation. While Mendel's experiments with mixing one trait always resulted in a
3:1 ratio (Fig. 1) between dominant and recessive phenotypes, his experiments
with mixing two traits (dihybrid cross) showed 9:3:3:1 ratios (Fig. 2). But the
9:3:3:1 table shows that each of the two genes are independently inherited with a
3:1 ratio. Mendel concluded that different traits are inherited independently of
each other, so that there is no relation, for example, between a cat's color and tail
length. This is actually only true for genes that are not linked to each other.
Independent assortment occurs during meiosis I in eukaryotic organisms,
specifically metaphase I of meiosis, to produce a gamete with a mixture of the
organism's maternal and paternal chromosomes. Along with chromosomal
crossover, this process aids in increasing genetic diversity by producing novel
genetic combinations.
Of the 46 chromosomes in a normal diploid human cell, half are maternally-
derived (from the mother's egg) and half are paternally-derived (from the father's
sperm). This occurs as sexual reproduction involves the fusion of two haploid
gametes (the egg and sperm) to produce a new organism having the full
complement of chromosomes. During gametogenesis - the production of new
gametes by an adult - the normal complement of 46 chromosomes needs to be
halved to 23 to ensure that the resulting haploid gamete can join with another
gamete to produce a diploid organism. An error in the number of chromosomes,
such as those caused by a diploid gamete joining with a haploid gamete, is
termed aneuploidy.
In independent assortment the chromosomes that end up in a newly-formed
gamete are randomly sorted from all possible combinations of maternal and
paternal chromosomes. Because gametes end up with a random mix instead of a
pre-defined "set" from either parent, gametes are therefore considered assorted
independently. As such, the gamete can end up with any combination of paternal
or maternal chromosomes. Any of the possible combinations of gametes formed
from maternal and paternal chromosomes will occur with equal frequency. For
human gametes, with 23 pairs of chromosomes, the number of possibilities is 223
or 8,388,608 possible combinations. The gametes will normally end up with 23
chromosomes, but the origin of any particular one will be randomly selected from
paternal or maternal chromosomes. This contributes to the genetic variability of
progeny.
Figure 2: The genotypes of two independent
Figure 1: Dominant and recessive traits show a 9:3:3:1 ratio in the F2 generation. Figure 3: The color alleles of
phenotypes. In this example, coat color is indicated by B Mirabilis jalapa are not
(1) Parental generation. (2) F1 (brown, dominant) or b (white) while tail dominant or recessive.
generation. (3) F2 generation. length is indicated by S (short, dominant) or s (1) Parental generation. (2) F1
Dominant (red) and recessive (long). When parents are homozygous for generation. (3) F2 generation.
60
(white) phenotype look alike in each trait ('SSbb and ssBB), their children in The "red" and "white" allele
the F1 (first) generation and show the F1 generation are heterozygous at both together make a "pink"
a 3:1 ratio in the F2 (second) loci and only show the dominant phenotypes. phenotype, resulting in a 1:2:1
generation If the children mate with each other, in the F2 ratio of red:pink:white in the F2
generation all combination of coat color and generation.
tail length occur: 9 are brown/short (purple
boxes), 3 are white/short (pink boxes), 3 are
brown/long (blue boxes) and 1 is white/long
(green box).
Chromosomal Mutations
Q.2 Describe polyploidy.

Ans. Polyploidy
The occurrence of related forms possessing chromosome numbers which are
multiples of a basic number (n), the haploid number. Forms having 3n
chromosomes are triploids; 4n, tetraploids; 5n, pentaploids, and so on.
Autopolyploids are forms derived by the multiplication of chromosomes from a
single diploid organism. As a result the homologous chromosomes come from the
same source. These are distinguished from allopolyploids, which are forms
derived from a hybrid between two diploid organisms. As a result, the
homologous chromosomes come from different sources. About one-third of the
species of vascular plants have originated at least partly by polyploidy, and as
many more appear to have ancestries which involve ancient occurrences of
polyploidy. The condition can be induced artificially with the drug colchicine and
the production of polyploid individuals has become a valuable tool for plant
breeding.
In animals, most examples of polyploidy occur in groups which are
parthenogenetic, or in species which reproduce asexually by fission. See Breeding
(plant), Chromosome aberration, Gene, Genetics, Plant evolution, Speciation
In addition to polyploid organisms in which all of the body cells contain
multiples of the basic chromosome number, most plants and animals contain
particular tissues that are polyploid or polytene. Both polyploid and polytene
cells contain extra copies of DNA, but they differ in the physical appearance of
the chromosomes. In polytene cells the replicated copies of the DNA remain
physically associated to produce giant chromosomes that are continuously visible
and have a banded pattern. The term polyploid has been applied to several types
of cells: multinucleate cells; cells in which the chromosomes cyclically condense
but do not undergo nuclear or cellular division (this process is termed
endomitosis); and cells in which the chromosomes appear to be continually in
interphase, yet the replicated chromosomes are not associated in visible polytene
chromosomes.
Cytoplasmic Inheritance
Q.3 Cytoplasmic inheritance.

Ans. When most people think of DNA, they think of it as stored in chromosomes that
replicate inside the nucleus.[citation needed] Extranuclear inheritance is the
transmission of genes that occur outside the nucleus. It is found in most
62
eukaryotes and is commonly known to occur in cytoplasmic organelles such as
mitochondria and chloroplasts or from cellular parasites like viruses or bacteria.
Contents
* 1 Extranuclear Inheritance of Organelles
* 2 Extranuclear Inheritance of Parasites
* 3 Types of Extranuclear Inheritance
Extranuclear Inheritance of Organelles :
Mitochondria are organelles which function to produce energy as a result of
cellular respiration. Chloroplasts are organelles which function to produce sugars
via photosynthesis in plants and algae. The genes located in mitochondria and
chloroplasts are very important for proper cellular function, yet the genomes
replicate independently of the DNA located in the nucleus, which is typically
arranged in chromosomes that only replicate one time preceding cellular division.
The extranuclear genomes of mitochondria and chloroplasts however replicate
independently of cell division. They replicate in response to a cells increasing
energy needs which adjust during that cells lifespan. Since they replicate
independently, genomic recombination of these genomes is rarely found in
offspring contrary to nuclear genomes, in which recombination is favored.
Extranuclear Inheritance of Parasites :
Extranuclear transmission of viral genomes and symbiotic bacteria is also
possible. An example of viral genome transmission is perinatal transmission. This
occurs from mother to fetus during the perinatal period, which begins before
birth and ends about 1 month after birth. During this time viral material may be
passed from mother to child in the bloodstream or breastmilk. This is of particular
concern with mothers carrying HIV or Hepatitis C viruses (2,3). Examples of
cytoplasmic symbiotic bacteria have also been found to be inherited in organisms
such as insects and protists.
Types of Extranuclear Inheritance :
Three general types of extranuclear inheritance exist. These are vegetative
segregation, uniparental inheritance and biparental inheritance.
• Vegetative segregation results from random replication and partitioning of
cytoplasmic organelles. It occurs with chloroplasts and mitochondria
during mitotic cell divisions and results in daughter cells that contain a
random sample of the parent cell’s organelles. An example of vegetative
segregation is with mitochondria of asexually replicating yeast cells (8).
• Uniparental inheritance occurs in extranuclear genes when only one parent
contributes organellar DNA to the offspring. A classic example of
uniparental gene transmisison is the maternal inheritance of human
mitochondria. The mother’s mitochondria are transmitted to the offspring
at fertilization via the egg. The father’s mitochondrial genes are not
transmitted to the offspring via the sperm. Very rare cases which require
further investigation have been reported of paternal mitochondrial
inheritance in humans, in which the father’s mitochondrial genome is
found in offspring. Chloroplast genes can also inherit uniparentally during
sexual reproduction. They are historically thought to inherit maternally,
but paternal inheritance in many species is increasingly being identified.
The mechanisms of uniparental inheritance from species to species differ
greatly and are quite complicated. For instance, chloroplasts have been
found to exhibit maternal, paternal and biparental modes even within the
same species.
• Biparental inheritance occurs in extranuclear genes when both parents
contribute organellar DNA to the offspring. It may be less common than
uniparental extranuclear inheritance, and usually occurs in a permissible
species only a fraction of the time. An example of biparental mitochondrial
inheritance is in the yeast, [[Saccharomyces cerevisiae]]. When two haploid
cells of opposite mating type fuse they can both contribute mitochondria to
the resulting diploid offspring

64
Glossary
Acellular: -Without cellular organization.
Amphipathic:- Molecules with hydrophobic and hydrophilic ends e.g.

phospholipids.
denosine triphosphate (ATP):- An organic compound rich in energy having there

phosphate groups joined by high energy bonds .On hydrolysis it produces
adenosine diphosphate ,-PO4 and energy.
Aneuploids: - The organisms having chromosomes of a set present in different

numbers.
Cell: - the structural and functional unit of all living organisms (plants and
animals) which is a mass of protoplasm enclosed by plasma –membrane and
contains one to many nuclei.
Cell division:-The process of division of pre-existing (parental) cell into two new
daughter cell.
Chiasma (Pl. chiasmata):-These are the point of contact and interchange between
the chromatids to two homologous chromosomes of a pair observed at diplotene
stage of the meiosis. These are points where crossing over takes place.
Codon: - A sequence of three nucleotides in one of the two strands of a DNA

double helix, or in a molecule of messenger RAN, that determines which of 20
amino acids will be inserted at a particular position in a polypeptide chain.
Crossing over: - Exchange of segments of homologous chromosomes at meiosis.

Diplotene :-A stage in the first prophase of meiosis , in which each of the synaptic
chromosomes get doubled by splitting .It comes after pachytene and is followed
by diakinesis .
Duplication:-The presence of a block of genes twice in a particular chromosome

or the same chromosome complement represented twice in an organism.
Eukaryotic cell: - A type of cell which possesses a well defined nuclear

membranes.
Genome: - The total complement of genes of an organism.
Glycolysis:-Anaerobic process of glucose dissimilation to pyruvic acid or latic

acid.
Heterochromatin: - Darkly stained part of the chromatin in the interphase nucleus

which represents the condensed chromatin and the results due to failure of its
conversion into a nuclear reticulum.
Linkage:-The tendency of alleles of different characters to be inherited together to

the next generation.
Meiosis:-Process of cell division where tow cell divisions occur in succession with
duplication of chromosomes only once .Thus four cells are formed ,each with half
the number of chromosomes as present in the parent cell.
Nucleotide: - the smallest unit of nucleic acid (DNA or RAN) formed of a

molecule of phosphoric acid, suger and a nitrogenous base(either a purine or a
pyrimidine).
Osmosis :-The passage of a fluid through a semi-permeable membrane due to

osmotic pressure.
Prokaryotic cell:-A type of cell in which the nuclear substances are not enclosed
within a membrane.
Purine :- Double ring, nitrogen containing base which is an important component
of DNA and RNA and certain other biologically active substances. Two purines ,
the adenine and guanine are found in both DNA and RNA.
Pyrimidine :- single ring nitrogen containing base that is also a component of

DNA and RNA. The eytosine and thymine are the two pyrimidines found in
DNA While eytosine and uracil are the two pyrimidines of RNA.
Transcription :- The transfer of a particular nucleotide sequence from DNA to a

completementary sequence in RNA by means of RNA polymerase.
Translocation: - The exchange of parts between two nonhomologous

chromosomes , following breakage, either spontanecous or reduced.
66
Unit membrane:- The membrane formed of two layers of lipid molecules
sandwiched between the two layers of protein molecules .It forms the outer
boundary of almost all the cell organelles.
Multiple Choice Questions

1. Fluid Mosaic model of plasma membrabe was first suggested by:-
(1) R . Brown
(2) Danielli and Davson in 1935
(3)Robertson in 1959
(4) Singer and Nicolson in 1972
Ans (4)
2. All cells come From pre- existing cells was first given by:-
(1) M. J. Schleiden
(2) Theodore Schwann
(3) H.J. Dutrochet
(4) Rudolf Virchow
Ans(4)
3. Mitochondria were first observed by:-

(1) Robert Brown in 1990
(2) Attman in 1986
(3) Benda in 1897
(4) None of the above
Ans(2)
4. If a bacteriophage having S35 infects a normal bacterium growing on normal

medium the bacteriophages produced after the death of bacterium will:-
(1) Incorporate S 35 into their particles.
(2) Not incorporate S35 into their particles.
(3) Incorporate S35 into their protein coat
(4) Incorporate S35 into their nucleic acid
Ans(2)
5. Main amino acids in the plasma membrane are:-
(1)Arginine and lysine (2) Histidine and glycine
(3)Tryptophan and alanine (4) Methionine and Tryptophan

Ans(1)
68
6. Lignin is a polymer of :-
(1) Galactouronic acid (2) Xylose (3) Glucose (4) Fructose
Ans(2)
7. Mitochondrial cristae are sites of:-

(1) Breakdown of macromolecules (2) Protein synthesis
(3) Phosphorylation of flavoprotains (4)Oxidation reduction reaction
Ans (4)
8. The cell wall of bacteria is composed of :-

(a)Chitin (2)Murein (3)Cellulose (4)Suberin
Ans(2)
9. Smallest cell organelles are

(1) Microsome (2) lysosomes (3) Dictyosomes (4) Ribosomes
Ans(4)
10. Polytene chromosomes are formed due to

(1) Mitosis (2) Meiosis (3) Endomitosis (4) Endomixis
Ans(3)
11. Which of the following represents the correct order in prophase :-

(1) Zygotene , Diplotene , Pachytene , Leptotene , Diakinesis
(2) Diakinesis , Diplotene Leptotene , Pachytene , Zygotene
(3) Leptotene , Zygotene , Pachytene, Diplotene , Diakinesis
(4) Pachytene , Leptotene , Zygotene , Diplotene, Diakinesis
Ans(3)
12. A red green colour blind male would have inherited the gave for this defect
from:-
(1) His mother
(2) His father
(3) Both mother and father
(4) Either mother of father
Ans(1)
13. In a plasmolyed cell , the space between cell wall and cell membrane is filled with:-
(1) Hypertonic solution (2) Hypotonic Solution
(3) Isotonic solution (4) There is no solution in the space
Ans(1)
14. L- shaped chromosomes are also called:-

(1) Acrocentric (2) Telocentric (3) Sub –metacentric (4) None of these
Ans(3)
15. A cell plate is laid during :-

(1) cytokinesis (2) Karyokinesis (3) Interphase (4) None of these
Ans(1)
16. In cell cycle , DNA replication occurs during:-

(1) G 1 phase (2) G2 Phase (3) Metaphase (4) Anaphase (5) S- Phase
Ans(5)
17. Spindle fibres are made up of :-

(1) Tubulin (2) Humulin (3) Intermediate filament (4) Flagellin
Ans(1)
18. F1 Particles present in mitochondria are :-

(1) Episome (2) Sphaerosomes (3) Oxysomes (4) Microsomes
Ans(3)
19. If a dihybrid for a quantitative character is crossed to a dominant homozygous.

Individual for
the same character , the phenotypic ratio of the progeny would be :-
(1) 1: 1: 1: 1 (2) 1: 2: 1 (3) 3: 1 (4) 13:3
Ans(2)
20. One of the following acts as a an initiator codon:-

(1) U U U (2) U U C (3) A U G (4) A A A
Ans(3)
21. In Mirabilis , when two pink flowered varieties were crossed , the progeny had 20 red
flowered plants, 41 pink flowered plants and 19 white flowered plants . The inheritance
of flower colour in Mirabilis was due to :-
(1) Complementary genes (2) Incomplete dominance of a gene
(3) Duplicate genes (4) Epistatic gene
Ans(2)
22. The human beings having x x y or x x y y chromosomes develop :-

70
(1) Klinefelter’s syndrome (2) Turner’s syndrome
(3)Down’s syndrome (4) None of the abone
Ans (1)
23. One of the following is a specific stain for D N A

(1) Basic fuchsin (2) Fehling’s solution
(3) Iodine solution (4) Benedict’s reagent
Ans (1)
24. Lampbrush chromosomes are found in :

(1) Salivary gland cells of Drosophila (2) Oocytes of amphibians
(3)Spermatocytesof amphibians (4) Gonads of man
Ans (2)
25. DNA replication occurs through the activity of :-

(1) DNA Polymerase (2) RNA Polymerase
(3) Ribonuclease (4) Deoxyribonuclease
Ans(1)
Case study
1. French biologist cue not crossed wild grey coloured mice with white (albino) mice
In the first generation all were grey. From many litters he obtained in F2 198 grey
and 72 white mice.
(a)Propose a hypothesis to explain these results?
(b)On the basis of hypothesis ,diagram the cross and compare the
observed results with those expected.
Ans : In a cross between grey and white only grey mice appear in F 1. It means grey
colour is dominant over white .In F2 generation grey and white mice appear in
the ratio of 198:72 or 2.75:1. This mean that the cross follows the monohybrid
cross of mendel and exhibits phenomenon of segregation and complete
dominance. This experiment and result of the cross can be tabulated as follows:-
Grey mice x White mice

GG gg
Gg
Grey mice
GG Gg Gg gg
Grey Grey Grey White grey
In the above cross the grey and white are expected to appear in the ratio of
3:1;but in the experiment the ratio is found to be 2.75:1.
72
B.Sc. (Part I) Examination, 2011

(Faculty of Science)
[Also Common with Subsidiary Paper of B.Sc. (Hons.) Part I]
(Three – Year Scheme of 10+2+3 Pattern)
Zoology
Second Paper
Cell Biology and Genetics
Year – 2011
Time allowed : Three Hour Maximum Marks : 33

Question No. 1 part-I is compulsory. Attempt four questions from Part-II
selecting at least one question from each section. All questions in Part-II
carry equal 6 marks.
Part-I
1. Answer the following question in short (Maximum 25 words) 1 x 9 = 9

(i) What are the desmosomes ?
(ii) Explain the function of centriole ?
(iii) What is phagocytosis ?
(iv) What is inerphase ?
(v) What are exons ?
(vi) What is euchromatain ?
(vii) Explain the process of crossing over
(viii) What do you understand by aneuploidy
(ix) In the context of ABO blood groups, where are the antigens and antibodies
present in the blood.
Part-II
Section-A
2. Describe the structure, chemical composition and functions of mitochondria
.
3. Draw neat and labeled diagrams of the following : -
(a) A typical animal cell, as seen by an electron microscope.
(b) T. s. of flagellum.
4. Write notes on the following
(a) Sodium pump (b) Polymorphism in lysosomes
Section-B
5. Explain the mechanism of protein synthesis
6 Draw beat and labeled diagrams of the process of meiosis. No description is
required
7. Write notes on the following: -
(a) Different between mitosis and meiosis
(b) Okazaki fragments.
Section-C
8. What do you understand by linkage? What id its importance? Explain different
types of linkages with suitable examples.
9. Discuss mendal`s laws with examples.
10. Write notes on the following:-
(a) Supplementary genes (b) Rh factor and its significance.
________
74

Zoology
Second Paper
Year – 2010
Question No. 1 part-I is compulsory. Attempt four questions from Part-II selecting at
least one question from each section. All questions in Part-II carry equal 6 marks.
Part-I
1. Answer the following question in short (Maximum 25 words): 1x9=9
(i) Give two exceptions of cell theory.
(ii) Who has propounded the fluid mosaic model of plasma membrane?
(iii) Which stage of cell cycle is suitable for chromosome study?
(iv) Which are termination codons?
(v) What type of cell division takes place during grafting and cell culture?
(vi) Explain in brief the law of incomplete dominance.
(vii) Give two example of translocation mutation.
(viii) What is linkage?
(ix) Why in cytoplasm inheritance, are the material characters inherited in
offspring?
Part-II
Section-A
2. Differentiate between prokaryotic and eukaryotic cell.
3. Draw neat and labeled diagram of plasma membrance.
4. Explain biogenesis of mitochondria.
Section-B
5. Write details account on structure and function of nuclear envelope.
6. Explain the process of DNA replication in eukaryotic cell.
7. Write short notes on the following:
(a) Call cycle
(b) Genetic code
Section-C
8. Explain the brief the work of Mendel and write their significance.
9. Explain chromosomal mutation with suitable example.
10. Write short notes on following:
(i) Epitasis
(ii) ABO blood groups
76

Zoology
Second Paper
Year – 2009
Part-I
(i) Who has propounded the fluid mosaic model of plasma membrance?
(ii) What is active transport?
(iii) Who has discovered the ribosome in animal cell?
(iv) What is Barr body? Write its location in the cell.
(v) In which animals are the polytene chromosomes found?
(vi) What is central dogmaof protein synthesis?
(vii) In which chromatids does crossing over take place ?
(viii) Give two examples of lethal genes.
(ix) Write factors responsible for imduced mutation.
Part-II
Section-A
(i) Plasma membrance
(ii) Passive transport
3. Describe chemiosmotic hypothesis of Mitchell.
4. Describe in brief:
(i) Rough endoplasmic reticulum
(ii) Lysosomes
Section-B
5. Draw neat, labeled diagram of D.N.A.
6. Explain the experiment of Mselson and Stahl.
7. Describe the process of protein synthesis in eukaryotic cell.
Section-C
8. How many contrasting characters were taken by Mendel for his experiment to
give law of independent assortment? Give genotypic ratio of F2 generation.
9. Describe in brief:
(i) Chromosome mapping
(ii) Linkage in Drosophila
11. Describe multiple allele inheritance with suitable examples.
_________
78

Zoology
Second Paper
Year – 2008
Part-I
(i) Give three characteristics of mitochondrial DNA.
(ii) What is unit membrane concept?
(iii) Differentiate active and passive transports.
(iv) Give three features of Prokaryotes.
(v) What is erythroblastosis feetalis?
(vi) Give three characteristics of genetic code.
(vii) What are high energy compounds?
(viii) Give three features of Lampbrush chro-mosome.
(ix) What are introns and exons?
Part-II
Section-A
(i) Cell theory. (ii) Cytoskeleton
3. Describe the structure, functions and biogenesis of mitochondria.
(i) Golgi body (ii) Ribosome
Section-B
5. What are chromosomes? Describe the detail structure of the eukaryotic
chromosome with the help of nucleosome concept.
(i) DNA replication on the following:
(ii) Lampbrush chromosome.
(i) Call cycle (ii) Transcription
Section-C
8. Explain in brief Mendel’s laws of inheritance. What is test corss.
9. Write short notes on any two of the following:
(i) Chromosomal mutations (ii) Polyploidy
(ii) Multiple gene inheritance
10. Explain in brief cytoplasmic inheritance.
**********
80
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What is the purpose and scope of the book?

What is the purpose and scope of the book?

What are some of the topics covered in the book?

What are some of the topics covered in the book?

Biyani's Think Tank

Concept based notes

Concept & Copyright :

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Nuclear material of prokaryotic cell consist of a single chromosome that is in

A prokaryotic cell has three architectural regions:

The plasma membrane resembles that of prokaryotes in function, with minor

Structure of a typical plant cell

The cytoplasm of a cell is surrounded by a cell membrane or plasma membrane.

Bovine Pulmonary Artery Endothelial cell: nuclei stained blue, mitochondria

Foreign genetic material (most commonly DNA) can also be artificially

Mitochondria and Chloroplasts – eukaryotes only - the power generators:

Endoplasmic reticulum – eukaryotes only: The endoplasmic reticulum (ER) is

Lysosomes and Peroxisomes – eukaryotes only: Lysosomes contain digestive

Centrosome – the cytoskeleton organiser: The centrosome produces the

Structures outside the cell membrane

Growth and metabolism

An overview of protein synthesis.

Prokaryotic cells divide by binary fission. Eukaryotic cells usually undergo a

DNA replication, or the process of duplicating a cell's genome, is required every

Transcription is the process where genetic information in DNA is used to produce

Two different classes of molecules are responsible for synthesis of fats:

The Fluid Quality of Membranes :

Cell Membrane Transport

Q.2 Write a short note on passive transport.

Q.3 What do you understand by active transport? Explain it.

Primary active transport :

Secondary active transport :

Q.4 Describe structure and functions of mitochondria?

A mitochondrion contains outer and inner membranes composed of phospholipid

1. the outer mitochondrial membrane,

Programmed cell death :

Electron transport chains in mitochondria

NADH → Complex I → Q → Complex III → cytochrome c → Complex IV → O2

In Complex I (NADH dehydrogenase, also called NADH:ubiquinone

The pathway of electrons occurs as follows:

NADH is oxidized to NAD+, by reducing Flavin mononucleotide to FMNH2 in

In Complex II (succinate dehydrogenase; EC 1.3.5.1) additional electrons are

In Complex III (cytochrome bc1 complex; EC 1.10.2.2), the Q-cycle contributes to

When electron transfer is reduced (by a high membrane potential or respiratory

In Complex IV (cytochrome c oxidase; EC 1.9.3.1), sometimes called cytochrome

Q.4 Write a short note on Endoplasmic Reticulum.

Q.5 What are Ribosomes?

Q.1 What do you know about chromosome?

In eukaryotes, nuclear chromosomes are packaged by proteins into a condensed

Compaction of the duplicated chromosomes during mitosis and meiosis results in

Q.2 Describe cell division.

Q.3 Write a short note on lampbrush chromosome.

Q.4 Write a note on polytene chromosome.

Q-1 What is DNA? Explain with suitable diagram.

Some RNA molecules play an active role in cells by catalyzing biological

An important structural feature of RNA that distinguishes it from DNA is the

Secondary structure of a telomerase RNA.

The functional form of single-stranded RNA molecules, just like proteins,