Use of The Spectrophotometer-2

USE OF THE SPECTROPHOTOMETER.....................
INTRODUCTION
In addition to the light microscope, the spectrophotometer is usually found in the

biological laboratory. This instrument allows the investigator to identify compounds of biological
interest and quantify them. Identification is determined by producing an absorption spectrum of a
compound (see the laboratory exercise on plant pigments, Exercise 10). Quantifying the amount
of the material present, usually in solution, is done: (a) directly if the substance is a strong
absorber of a measurable wavelength () of light; (b) indirectly by chemically modifying the
compound so that it is a strong absorber at a measurable wavelength of light; or (c) indirectly by
stoichiometrically coupling its reaction to the formation of another light absorbing compound.
MATERIALS
2,6-dichlorophenol indophenol, graduated cylinders, flasks, stir plates, stir bars,
micropipettors, spectrophotometer tubes, rulers, spectrophotometer
A. BEER-LAMBERT LAW
Spectrophotometry, or spectrophotometric analysis, refers to the quantitative

determination of the radiant energy ratio of incident to transmitted light beams at a given
wavelength. Spectrophotometers are instruments that allow for the determination of this ratio.
Spectrophotometers are designed to make these measurements over a given range of wavelengths
of the electromagnetic spectrum. Usually, in the biological laboratory a spectrophotometer will
allow for measurements in the UV and visible wavelengths.
If Pi is the intensity of the incident beam of light and P t is the intensity of the transmitted
light, then, by definition, the ratio Pt/Pi equals the transmittance, T, and log Pi/Pt equals the
absorbance, A. Thus:
A = -log T . . . . . . . . . . . . . . . . . . . . . . . . . . . (1)
A fundamental law of spectrophotometry is the Beer-Lambert law, or simply Beer’s Law,
that states that the amount of radiant energy absorbed (log P i/Pt) by a compound in solution is
proportional to its concentration and the length of the path that the light beam passes through the
solution:
log Pi / Pt = A = a c l . . . . . . . . . . . . . . . . . (2)
where:
c = concentration
l = path length
a = proportionality constant called absorptivity.
16
The absorptivity at a given wavelength is dependent upon the chemical structure of the
compound, which determines the probability that the wavelength of light will be absorbed. The
absorptivity constant is sometimes referred to as the extinction coefficient.
If the concentration is expressed in molarity, then a is called molar absorptivity or molar

extinction coefficient (e). Remember that a or e is dependent upon the wavelength.
Conventionally, the path length used is 1 cm, and thus, the units for e are cm-1 M-1. Note that A,
therefore, is a unitless value, which it should be, based on its definition above (i.e., a ratio).
A plot of the absorbance of a substance in solution at a given wavelength, as a function of

the molar amount of the substance present, is called a calibration plot or standard curve. If you
examine equation #2, you will see that the slope of a standard curve is e. Having determined e,
and knowing l (the pathlength is 1 cm), the concentration of the substance in any other similar
sample can be determined using equation #2, Beer's Law.
An absorbance spectrum of a given compound is a graphical representation of the

absorbance at each wavelength over a given wavelength range (usually UV - visible), that is, A
vs . Chemically different compounds have their own distinctive absorbance spectrum. You will
be determining an absorbance spectrum for the electron acceptor 2,6-dichlorophenol inophenol
(DCPIP) and will also plot absorbance spectra in a future lab exercise on plant pigments.
B. THE INSTRUMENT
There are four essential parts to a spectrophotometer:
1. light source
2. monochromator or filter
3. sample cell with holder
4. detector
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Figure 2.1.Essential parts of the spectrophotometer
Light sources can vary. Most use a tungsten filament as an emitter of visual light and a
deuterium-discharge tube as a source of UV. The wavelength of light is selected by a
monochromator, which consists of a prism or diffraction grating to disperse the light and to
separate its component wavelengths and a narrow slit to select the desired wavelength. It is
important that the light being allowed to enter the cell be of a single wavelength for maximum
sensitivity and a minimum of interference by other compounds that may be present. The cell that
holds the solution must be made of a substance that does not absorb at the wavelength in use. For
the visible spectra, glass or plastic is used. For work in the UV wavelength range, quartz is used.
The detector converts the radiant energy of the transmitted light into an electrical signal,
the strength of which is proportional to the intensity of light transmitted (actually the number of
photons striking its surface). A phototube is often used for this purpose. The electronics of the
spectrophotometer convert this signal into a reading of transmittance or absorbance.
Light sources do not emit the same light intensity over the entire spectrum; indeed, each
source has its own inherent emission spectrum. Therefore, when determining an absorbance
spectrum, it is important to adjust for the difference in light intensity at each wavelength of
18
incident light. This can be done manually (using a “ZERO CONTROL” knob) or automatically,
depending on the sophistication of the instrument.
C. Directions for Spectronic® 20 Genesys ™ Spectrophotometer
1. Choose A from the A/T/C button to select for absorbance mode.

2. Press nm  or nm  to select for correct wavelength.
3. Insert your blank into the cell holder and close the sample door.
4. Press the 0 ABS/100%T button to zero the absorbance.
5. Remove blank and insert your sample into the cell holder. Close door, and read
absorbance from the LED display.
D. PREPARING A STANDARD CURVE AND CALCULATING THE MOLAR

EXTINCTION COEFFICIENT
1. Prepare 100 ml of 1 mM 2,6-dichlorophenol indophenol (DCPIP) in distilled

water (DW) using the glassware provided. Make sure all the DCPIP goes into
solution. (The molecular weight of DCPIP is 290.08. g mole-1)
2. Dilute the solution 1:10 by adding 10 ml of 1 mM DCPIP to 90 ml of DW to form

a 100 M stock solution of DCPIP.
3. Using the Table 2.2, prepare a serial dilution series of different concentrations of
DCPIP in the spectrophotometer tubes provided. Take care to label each tube
with a marker pen to indicate the appropriate concentration. Remember to use a
new pipette tip for each manipulation.
4. Check that the dilution curve is correct by eye. Tube #9 should be the deepest
blue in color.
5. Adjust  setting to 500 nm. Zero the spectrophotometer using tube #1.
6. Remove tube #1 and place tube #9 in the spectrophotometer and record the
absorbance value.
7. Repeat steps 5 and 6 at 10-nm increments from 500-700 nm. Zero at each
wavelength before taking a measurement. Record values in Table 2.1. Plot these
data (absorbance: y-axis; : x-axis) on the graph paper provided and determine
the absorbance maximum, the wavelength at which DCPIP reaches its highest
absorbance.
8. Set the wavelength to the absorbance maximum and readjust the zero control at
this wavelength.
19
9. Determine the absorbance of tubes #1-9 at this wavelength. Record values in
Table 2.2 and construct a standard curve on the graph paper provided.
10. Determine the molar extinction coefficient for the dye from your standard curve.
Enter this value below, for it will be used in a later laboratory exercise.
micromolar Extinction Coefficient DCPIP @ _______ nm = ________
TABLE 2.1 Absorbance of Tube # 9 as a Function of Wavelength
Wavelength (nm) Absorbance

500
510
520
530
540
550
560
570
580
590
600
610
620
630
640
650
660
670
680
690
20
700
21
Table 2.2 Absorbance at max as a Function of DCPIP Concentration
Tube # Absorbance ml of stock ml distilled Final

(at max) solution water concentration of
DCPIP (µM)
1 0.0 5.0 0
2 0.05 4.95 1.0
3 0.25 4.75 5.0
4 0.5 4.50 10.0
5 1.0 4.0 20.0
6 1.5 3.5 30.0
7 2.5 2.5 50.0
8 4.0 1.0 80.0
9 5.0 0.0 100.0
11. You are provided with an additional sample containing an unknown concentration of
DCPIP. Using your standard curve from part 9, determine the concentration of your
unknown.
Unknown # Unknown absorbance _______________
Unknown Concentration
12. Knowing the molar extinction coefficient for DCPIP, Determine the concentration of your
unknown Using Beer’s law. Recall that A = ecl
Calculated “unknown” concentration using Beer’s law _______________
22

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USE OF THE SPECTROPHOTOMETER.....................

In addition to the light microscope, the spectrophotometer is usually found in the

Spectrophotometry, or spectrophotometric analysis, refers to the quantitative

If the concentration is expressed in molarity, then a is called molar absorptivity or molar

A plot of the absorbance of a substance in solution at a given wavelength, as a function of

An absorbance spectrum of a given compound is a graphical representation of the

There are four essential parts to a spectrophotometer:

C. Directions for Spectronic® 20 Genesys ™ Spectrophotometer

1. Choose A from the A/T/C button to select for absorbance mode.

D. PREPARING A STANDARD CURVE AND CALCULATING THE MOLAR

1. Prepare 100 ml of 1 mM 2,6-dichlorophenol indophenol (DCPIP) in distilled

2. Dilute the solution 1:10 by adding 10 ml of 1 mM DCPIP to 90 ml of DW to form

micromolar Extinction Coefficient DCPIP @ _ nm = __

TABLE 2.1 Absorbance of Tube # 9 as a Function of Wavelength

Wavelength (nm) Absorbance

Tube # Absorbance ml of stock ml distilled Final

Unknown # Unknown absorbance _______________

Calculated “unknown” concentration using Beer’s law _______________

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