Gene Splicing

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1.

GENE SPLICING
Is a process in which fragments of DNA from one or more organisms are combined; or
cutting the DNA of a gene to add base pairs.
It began getting world wide attention in 1973, when the first genetically modified organism
was recreated.
Herbert W. Boyer and Stanley N. Cohen created the first DNA recombinant organism.
Paul Berg created the first DNA recombinant molecule.

Important Details
Genetic engineering involves the manipulations of genes in organisms.
Normally happens prior to the mRNA translation
The virus or plasmid vectors carry the DNA fragments into cells.
If genetic material from other species is added to the host, it is called transgenic.
If genetic material from the same species or species that can naturally breed with the host
is added, it is called cisgenic.
Scientist are able to cut and attached fragments of DNA by using restriction enzymes.
Fragments are attached by using ligase.
DNA is usually cut at the recognition points on the DNA strand.

Gene Splicing Mechanism


There are serval types of common alternative splicing events:
Exon Skipping
- This is the most common known alternative splicing mechanism in which
exon(s) are included or excluded from the final gene transcript leading to
extended or shortened mRNA variants.
- Its purpose is to restore the reading frame within the gene.
- Mainly used to help with Duchenne muscular dystrophy.

Intron Retention
- An event in which an intron is retained in the final transcript. In humans 2-5 %
of the genes have been reported to retain introns.
Alternative 3' splice site and 5' splice site
- Alternative gene splicing includes joining of different 5' and 3' splice site. In
this splicing mechanism, two or more alternative 5' splice site compete for
joining to two or more alternate 3' splice site.

Gene Splicing Process


Step 1: Plasmid is extracted from the bacteria, and the gene of interest is targeted.
Step 2: The gene of interest is identified and isolated.
Step 3: Restriction enzymes are added to target the specific section in the gene sequence so
that they are separated from rest of the strand.
Step 4: The gene is then linked together with the plasmid by using ligase.
Step 5: The recombinant DNA is then re-inserted in the bacteria and then the bacteria is
inserted into the host organism.

2. Plasmid
A circular form of DNA often used as a vector in genetic engineering.
A small DNA molecule within a cell that is physically separated from a chromosomal DNA
and can replicate independently. They are most commonly found in bacteria as small circular,
double-stranded DNA molecules; however, plasmids are sometimes present in archaea and
eukaryotic organisms.
Are considered replicons, a unit of DNA capable of replicating autonomously within a suitable
host. However, plasmids, like viruses, are not generally classified as life. Plasmids can be
transmitted from one bacterium to another (even of another species) via three main
mechanisms: transformation, transduction, and conjugation. This host-to-host transfer of
genetic material is called horizontal gene transfer, and plasmids can be considered part of the
mobilome.

Plasmid three main feature


- Multiple cloning site
- Origin of replication
- Selectable marker

3. Nitrosamines
Nitrosamines are important group of mutagens found in tobacco, and may also be formed in
smoked meats and fish via the interaction of amines in food with nitrites added as preservatives.
Sleiman identified the formation of carcinogenic tobacco-specific nitrosamines (TSNAs) from
the reaction of adsorbed nicotine with nitrous acid.
Nitrosamines are formed by reaction of secondary or tertiary amines with a nitrosating agent.
In foods, the nitrosating agent is usually nitrous anhydride, formed from nitrite in acidic,
aqueous solution. Food constituents and the physical make-up of the food can effect
nitrosamine formation. Ascorbic acid and sulfur dioxide are used to inhibit nitrosamine
formation in foods.
The possible formation of nitrosamines from amine present in or derived from the diet occurs
by reaction with nitrous acid at pH 4. In man, gastric juice attains a pH of 1.1. Such high
concentrations of hydrogen ions give rise to nitrosyl cation NO , a highly reactive nitrosating
agent. The presence of meat, myoglobin, or hemoglobin serve to neutralize this cation by
reacting with Fe 2 . Fish and cheese do not provide this neutralization, hence permitting the
nitrosation of the present amines to possible carcinogenic nitrosamines.

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