Chapter 26

26
Chapter Review
t Clades can be distinguished by their shared derived characters.
SU M MA RY OF K E Y C ONC E P T S
Monophyletic group
26.1
Polyphyletic group
Phylogenies show evolutionary relationships (pp. 548551)
t Linnaeuss binomial classification system gives organisms two-
CONCEPT
part names: a genus plus a specific epithet.

t In the Linnaean system, species are grouped in increasingly
broad taxa: Related genera are placed in the same family, families in orders, orders in classes, classes in phyla, phyla in kingdoms, and (more recently) kingdoms in domains.
t Systematists depict evolutionary relationships as branching phylogenetic trees. Many systematists propose that classification
be based entirely on evolutionary relationships.
Branch point
Most recent
common
ancestor
Paraphyletic group
Taxon A
Taxon B
t Among phylogenies, the most parsimonious tree is the one that
Sister taxa
Taxon C
Taxon D
? Explain the logic of using shared derived characters to infer

phylogeny.
Taxon E
Polytomy
Taxon F
Taxon G
CONCEPT
Basal taxon
t Unless branch lengths are proportional to time or genetic
change, a phylogenetic tree indicates only patterns of descent.

t Much information can be learned about a species from its evolutionary history; hence, phylogenies are useful in a wide range of
applications.
?
Humans and chimpanzees are sister species. Explain what that means.
CONCEPT
26.2
Phylogenies are inferred from morphological and molecular

data (pp. 551553)
t Organisms with similar morphologies or DNA sequences are
likely to be more closely related than organisms with very different structures and genetic sequences.
t To infer phylogeny, homology (similarity due to shared ancestry) must be distinguished from analogy (similarity due to convergent evolution).
t Computer programs are used to align comparable DNA sequences and to distinguish molecular homologies from coincidental matches between taxa that diverged long ago.
? Why is it necessary to distinguish homology from analogy to infer
phylogeny?
CONCEPT
26.3
Shared characters are used to construct phylogenetic trees

(pp. 553559)
t A clade is a monophyletic grouping that includes an ancestral
species and all of its descendants.
requires the fewest evolutionary changes. The most likely tree is

the one based on the most likely pattern of changes.
t Well-supported phylogenetic hypotheses are consistent with a
wide range of data.
26.4
An organisms evolutionary history is documented in its

genome (pp. 559560)
t Orthologous genes are homologous genes found in different
species as a result of speciation. Paralogous genes are homologous genes within a species that result from gene duplication;
such genes can diverge and potentially take on new functions.
t Distantly related species often have many orthologous genes.
The small variation in gene number in organisms of varying
complexity suggests that genes are versatile and may have multiple functions.
? When reconstructing phylogenies, is it better to compare orthologous or paralogous genes? Explain.
CONCEPT
26.5
Molecular clocks help track evolutionary time (pp. 560562)

t Some regions of DNA change at a rate consistent enough to
serve as a molecular clock, in which the amount of genetic

change is used to estimate the date of past evolutionary events.
Other DNA regions change in a less predictable way.
t Molecular clock analyses suggest that the most common strain
of HIV jumped from primates to humans in the early 1900s.
?
Describe some assumptions and limitations of molecular clocks.
CONCEPT
26.6
Our understanding of the tree of life continues to change

based on new data (pp. 562564)
t Past classification systems have given way to the current view of
the tree of life, which consists of three great domains: Bacteria,

Archaea, and Eukarya.
CHAPTER 26
Phylogeny and the Tree of Life
565
L E V E L 2 : APP L IC AT I O N/ A N A LYSI S
3. In Figure 26.4, which similarly inclusive taxon descended from

the same common ancestor as Canidae?
a. Felidae
c. Carnivora
b. Mustelidae
d. Lutra
4. Three living species X, Y, and Z share a common ancestor T, as

do extinct species U and V. A grouping that consists of species
T, X, Y, and Z (but not U or V) makes up
a. a monophyletic taxon.
b. an ingroup, with species U as the outgroup.
c. a paraphyletic group.
d. a polyphyletic group.
Character
Dolphin
2. To apply parsimony to constructing a phylogenetic tree,

a. choose the tree that assumes all evolutionary changes are
equally probable.
b. choose the tree in which the branch points are based on as
many shared derived characters as possible.
c. choose the tree that represents the fewest evolutionary
changes, in either DNA sequences or morphology.
d. choose the tree with the fewest branch points.
Leopard
1. In a comparison of birds and mammals, the condition of having four limbs is

a. a shared ancestral character.
b. a shared derived character.
c. a character useful for distinguishing birds from mammals.
d. an example of analogy rather than homology.
Turtle
L E V E L 1 : K N O W L E D G E/ CO M P RE HE N S I O N
Salamander
T ES T Y OU R U N D E RS TAN D I NG
8. E VO L U T ION C ON N E C T IO N
Darwin suggested looking at a species close relatives to learn
what its ancestors may have been like. How does his suggestion
anticipate recent methods, such as phylogenetic bracketing
and the use of outgroups in cladistic analysis?
9. S CI EN T IFIC I N Q U IR Y
D R A W I T (a) Draw a phylogenetic tree based on characters
15 in the table below. Place hatch marks on the tree to indicate the origin(s) of characters 16. (b) Assume that tuna and
dolphins are sister species and redraw the phylogenetic tree
accordingly. Use hatch marks to indicate the origin(s) of characters 16. (c) How many evolutionary changes are required in
each tree? Which tree is most parsimonious?
Tuna
? Why was the five-kingdom system abandoned for a three-domain

system?
LE V E L 3 : S Y N T H E S I S / E VA L U AT I O N
Lamprey
otes are most closely related to archaea, while data from some
other genes suggest a closer relationship to bacteria.
t Genetic analyses indicate that extensive horizontal gene transfer
has occurred throughout the evolutionary history of life.
Lancelet
(outgroup)
t Phylogenies based in part on rRNA genes suggest that eukary-
(1) Backbone
(2) Hinged jaw
(3) Four limbs
1*
(4) Amnion
(5) Milk
(6) Dorsal fin
*Although adult dolphins have only two obvious limbs (their flippers), as embryos they have two hind-limb buds, for a total of four limbs.
10. W RI TE A B O U T A T H E ME : IN FO RM AT I O N
In a short essay (100150 words), explain how genetic informationalong with an understanding of the process of descent
with modificationenables scientists to reconstruct phylogenies that extend hundreds of millions of years back in time.
11. SYN T H ES IZE YOU R K N O WL ED GE
5. Based on the tree below, which statement is not correct?

Salamander
Lizard
Goat
Human
a. The salamander lineage is a basal taxon.

b. Salamanders are a sister group to the group containing lizards, goats, and humans.
c. Salamanders are as closely related to goats as to humans.
d. Lizards are more closely related to salamanders than to
humans.
6. If you were using cladistics to build a phylogenetic tree of cats,

which of the following would be the best outgroup?
c. lion
a. wolf
d. leopard
b. domestic cat
7. The relative lengths of the frog and mouse branches in the
phylogenetic tree in Figure 26.13 indicate that
a. frogs evolved before mice.
b. mice evolved before frogs.
c. the homolog has evolved more rapidly in mice.
d. the homolog has evolved more slowly in mice.
566
UNIT FIVE
The Evolutionary History of Biological Diversity
This West Indian manatee (Trichechus manatus) is an aquatic

mammal. Like amphibians and reptiles, mammals are tetrapods (vertebrates with four limbs). Explain why manatees are
considered tetrapods even though they lack hind limbs, and
suggest traits that manatees likely share with leopards and
other mammals (see Figure 26.12b). How might early members
of the manatee lineage have differed from todays manatees?
For selected answers, see Appendix A.
Students Go to MasteringBiology for assignments, the eText, and the

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26

Phylogenies show evolutionary relationships (pp. 548551)

t Linnaeuss binomial classification system gives organisms two-

part names: a genus plus a specific epithet.

t Among phylogenies, the most parsimonious tree is the one that

? Explain the logic of using shared derived characters to infer

t Unless branch lengths are proportional to time or genetic

change, a phylogenetic tree indicates only patterns of descent.

Phylogenies are inferred from morphological and molecular

Shared characters are used to construct phylogenetic trees

species and all of its descendants.

requires the fewest evolutionary changes. The most likely tree is

An organisms evolutionary history is documented in its

Molecular clocks help track evolutionary time (pp. 560562)

serve as a molecular clock, in which the amount of genetic

Describe some assumptions and limitations of molecular clocks.

Our understanding of the tree of life continues to change

the tree of life, which consists of three great domains: Bacteria,

Phylogeny and the Tree of Life

3. In Figure 26.4, which similarly inclusive taxon descended from

4. Three living species X, Y, and Z share a common ancestor T, as

2. To apply parsimony to constructing a phylogenetic tree,

1. In a comparison of birds and mammals, the condition of having four limbs is

? Why was the five-kingdom system abandoned for a three-domain

t Phylogenies based in part on rRNA genes suggest that eukary-

(2) Hinged jaw

(3) Four limbs

(6) Dorsal fin

5. Based on the tree below, which statement is not correct?

a. The salamander lineage is a basal taxon.

6. If you were using cladistics to build a phylogenetic tree of cats,

The Evolutionary History of Biological Diversity

This West Indian manatee (Trichechus manatus) is an aquatic

Students Go to MasteringBiology for assignments, the eText, and the

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