Biology Unit 5
Biology Unit 5
Biology Unit 5
Oestrogen
Started the repair of the endometrium following menstruation. Also
stimulates luteinising hormones.
Luteinising Hormone
This brings about ovulation i.e. the release of the secondary oocyte and
corpus luteum formation. It also stimulates progesterone production from
the corpus luteum
Progesterone
Thickens the endometrium and causes secretion of mucus from its cells.
Also progesterone inhibits FSH.
Therefore:
Hyperglycaemia
The water potential of the blood is lowered causing the movement of the
water from the cells into the blood by osmosis.
This-dehydrates the cells
When the glucose reserves of glycogen have been used up the body
responds by metabolising stored fat than proteins. The products produce
toxins
The raising of the blood glucose level causes the alpha cells to reduce the
secretion of glucagon. This is negative feedback.
The action of glucagon is antagonistic to that of insulin. The two are
mutually exclusive when on is working the other is not. This allows very
sensitive control of blood glucose levels about a set point.
Diabetes Mellitus
Type 1
Normally occurs early in the life and may be due to an autoimmune
response whereby the bodys own immune system attacks its own beta
cells of the pancreas. It develops quickly over a few weeks
Insufficient insulin is produced. Blood sugar levels become high and stay
high, but body cells do not receive enough glucose. Proteins and fats are
broken down.
Symptoms: weight loss and weakness. Glucose is excreted in the urine.
The person is thirsty. Possible lack of consciousness.
Treatment:
Insulin injections 2-4 times a day but the dose must be accurate as if the
does is too high hyperglycaemia results. Insulin cannot be taken orally
as the protein hormone would be digested
Type 2
Occurs in older people especially overweight. Usually produce lots of
insulin but liver and muscle dont respond to it.
Treatment:
Exercise and diet to lose weight, may be supplemented by insulin
injections. Drugs to stimulate insulin production may also be taken.
The protein hormone combines with the receptor site on the target
cell membrane to form an hormone-receptor complex
Thermoregulation
There are 3 ways that the body gains or loses heat:
Heat Loss
Vasodilation
Hypothalamus send impulses to the skin arterioles, there muscle relaxes
and the dilate to fill blood and supple more to the surface capillaries
This gives:
1) A shorter diffusion distances for heat to reach the skin surface
2) More heat at the skin surface
Heat is rapidly Conducted through the short distance to the skin surface
where it is Radiated away from the body.
Sweating
More sweat secreted onto skin surface. Body heat is used to evaporate
water
Pilorelaxtion
Impulses cause the hair erector muscle to relax. Less air is trapped
this reducing the insulating effect of body hair.
Long term heat exposure
Body accumulates by reducing the hormone thyroxin, to decrease the
metabolic rate.
Behavioural mechanism
Many animals are nocturnal avoiding the hot part of the day. Human seek
shade, a breeze and rest to have less muscle activity, less muscle
respiration and therefore less heat produced.
Heat Gains
Vasoconstriction
In cold conditions the superficial arterioles contract, so reducing the
quantity of blood reaching the skin surface in its capillaries. This way little
heat is lost be radiation from the skin surface
Sweating
Decreased rate of sweating
Shivering
Involuntary contraction which produces metabolic heat through the
extra respiration needed for energy
Insulation
It is an effective means of reducing heat loss from the body e.g. a
jumper adds a extr layer of air and other behavioural responses.
Metabolic Rate
Protein Synthesis
The expression of a gene (DNA in a nucleus) involves the production of
protein (on ribosomes or in a cytoplasm)
RNA-ribonucleic acid
Ribonucleic acid mononucleotide is made of 3 main parts:
1) Ribose sugar
2) Nitrogen base; guanine cytosine, adiene and uracil
3) Phosphate
It is a single chain that is shorter then DNA
Types of RNA
There are three types, messenger RNA, transfer RNA and ribosomal RNA
1) Messenger RNA- a single strand, synthesised in the nucleus then
leaving t direct protein synthesis
2) Transfer RNA- a single strand folded into a clover leaf shape. It
carries the amino acid needed for protein synthesis.
3) Ribosonal RNA ( what ribosomes are made of)
Genetic Code
This is the sequence of bases carrying genetic information. The RNA base
works in triplets to make sufficient codes to stand for 20 amino acids.
As there are 4 different bases; this means there are 64 3 letter codes to
stand for 20 amino acids so:
Gene Mutation
Any change in the DNA quantity or structure is called a Mutation.
A mutation in a body cell is not passed on to the next generation.
However, a mutation in a gamete is.
A gene mutation is a change in one or more nucleotide bases. (Downs
syndrome, an extra chromosome. 21 is a chromosome mutation.
A sequence of DNA codons is transcribed onto mRNA then translated into
a sequence of amino acids.
Therefore a change in a DNA base could cause a change in the amino acid
sequence.
Base Substitutions
Nonsense mutation.
If a base is changed (e.g. GTC ATC) instead of coding for glutamine we
code for Full stop.
A short non-functional protein is produced.
Mis-sense mutation.
If a base is changed (e.g. GTC GTG) instead of coding for glutamine we
code for histidine and this will affect the 3D tertiary structure formed by
hydrogen ions and disulphide bonds.
Silent mutation
Ia base is changed (e.g. GTC GTT) we still code for glutamine which has
more than one codon (a consequence of the degenerate code) so there is
no effect.
Base Deletions
If a single base is deleted, as bases are read in threes (codons) there will
be a frame shift. The gene is now read in the wrong 3 base groups and
the amino acid sequence will probably be totally different.
Causes of mutations
They happen spontaneously and randomly during mitosis or meiosis, with
a set frequency (mutation rate) they are permanent
They are assisted by external influences called mutagens (e.g. high
energy radiation, certain chemicals) which increase the mutation rate.
Cancer and uncontrolled cell division
The rate of cell division is controlled by 2 genes:
Photo-oncogenes which speed up cell division
Tumour suppresser genes which inhibit cell division
A proto-oncogene stimulates cell division by:
1) Producing growth factors at appropriate times.
2) Producing the correct no. of receptors on the cell membrane with which
the growth factors bind.
3) The binding stimulates the production of relay proteins within the cell.
4) The binding of relay proteins to DNA opens up the gene for cell division.
Mutation of a proto-oncogene into an oncogene
The transcriptional factor has a binding site white binds at the start of the
genes position on the DNA.
When it leaves the cytoplasm and enters the nucleus, the transcriptional
factor binds to the dna and the double helix opens.
mRNA is transcribed
when the gene is off the transcriptional factor binding site to the DNA is
blocked by an inhibitor.
Once the cut has been made, if the 4 unpaired bases on each end are read from
left to right they are the opposite of each other i.e they are palindromic.
Plasmids
A plasmid is a small loop of DNA inside the bacterial (prokaryote) cell in addition
to the bacterial chromosome.
It can be removed, cut open, have an etra gene put in, and sewn back up again.
In this way it is used as a vector (carry extra gene into the host cell).
Performing genetic engineering
-remove the plasmid from a bacterial cell.
-cut it open using a specific restriction endonuclease (e.g. Hind III) to form sticky
ends This will occur at the recognition site.
-cut out the required gene (e.g. for human insulin) from human DNA using the
same restriction endonuclease. (the required gene will then have
complementary bases making its sticky ends compared with the plasmid)
- Add the required gene to the opened plasmid.
- The complementary bases will form a weak link with hydrogen bonds.
-Use the enzyme DNA ligase to permanentl bond the gene and the plasmid. It
will bond the sugar-phosphate back bones (phospholipidiester bonds formed by
condensation reactions)
-Temperature shock the bacterium and bombard it with Ca++, this will transform
the bacterium and allow it to take up the recombinant plasmid.
Reverse transcriptase to make a gene
-mRna for human insulin is extracted from a cell, islets of Langerhans.
-Treated with reverse transcriptase to produce a single strand of DNA. DNA
nucleotides have to be supplied.
-Treated with DNA polymerase to form a double helix of DNA (synthetic gene)
again DNA nucleotides have to be supplied.
-The ends of the synthetic gene are cut, producing sticky ends using restriction
endonuclease.
-The same restriction endonuclease is used to open the plasmid as was used to
cut the synthetic gene.
-DNA ligase is used to incorporate the gene into the plasmid (forms
phosphodiester bonds).
Marker Genes
Antibiotic resistance markers
To check if a bacterial call has received the plasmid containing the new gene a
gene for resistance to an antibiotic e.g. tetracycline can be spliced alongside it. If
the cells are grown on a medium containing tetracycline, only the ones with the
antibiotic resistance gene will grow (they also have the new gene).
Flourescent markers
A certain species of jellyfish has the gene to produce a green fluorescent
pigment. This gene can be engineered out of the jellyfish and incorporated into a
bacterial plasmid; it will be obvious that the bacterium has taken up the plasmid
because the bacterium will fluoresce green. If a useful gene (e.g. human insulin)
is spliced in alongside you can quickly separate any that have not taken up the
plasmid.
Enzyme markers
When the lactase is secreted it will change the colour of a particular indicator
blue.
If a required gene is spliced within the lactase gene and the plasmid bearing
them is successfully taken up by a bacterium, it will not be able to make lactase
and the medium will stay colourless.
Untransformed bacteria with the original entire lactase gene would still produce
the lactase and turn the medium blue.
The polymerase-chain reaction
Detective work may rely on minute quantities of DNA (blood, sperm, skin cell)
used as evidence. PCR allows a way of copying fragments of DNA many times
thereby increasing the quantity of DNA that can be analysed.
1) A piece of DNA is targeted
2) Primers are made. These are short lengths of single stranded DNA (20-30
nucleotides) artificially synthesised to be complementary to one end of
each of the two original DNA strands.
3) Buffer is added and the DNA is heated to 95 degrees for 20s to separate
the strands in the target DNA by breaking the hydrogen bonds.
4) The primers are added and the solution allowed to cool to 55degrees so
that hydrogen bonds can form between the DNA and the complementary
primers.
a. The primersi. Provide the starting point for the DNA polymerase as it can
only build up from an existing sequence
ii. Prevent the two separated strands from rejoining.
5) DNA nucleotides (deoxyribose sugar, phosphate and base) and DNA
polymerase are added. The enzyme is extracted from heat tolerant
bacteria living in thermal springs ie. It is a thermostable enzyme.
The solution is heated to 72 degrees for 30s. This is the optimum
temperature for the enzyme and it allows two new strands of DNA to form
alongside the originals.
6) The process is repeated (every 2 minutes).
In vitro (PCR) an In Vivo (Mitosis) cloning
In Vitro
In Vitro is very rapid
In Vitro does not require living cells (complex culturing)
In Vivo
In Vivo is useful to transform another organism (plasmid used as a vector to
deliver the gene)
In Vivo has almost no risk of contamination as restriction endonucleases are so
specific (rogue DNA unlikely to have the sticky ends to enter the plasmid).
In Vivo is accurate. Mutations very rare, but PCR sometimes copies incorrectly.
In Vivo is precise (cuts out specific genes with no extra DNA).
In Vivo transformed bacteria can be grown on to make many gene products.
Electrophoresis
Gene Probes
Produced as follows:
Make a piece of DNA with the complementary base sequence to the gene.
Label it radioactivity
Genetic fingerprinting
Non-coding DNA is used (introns). Introns contain repetitive DNA called
sequences. The number and length of the core sequences vary uniquely with
individuals. Identical twins (identical genotype) have identical introns.
All the DNA is extracted from blood, sperm, root hair cells etc.
Its quantity can e magnified by the polymerase chain reaction (PCR)
Restriction endonucleases are used to cut the DNA (at specific points
called recognition sites determined by the base sequence) close to the
core sequence.
DNA segments are separated by gel electrophoresis.
The gel is immersed in alkali to make the DNA single stranded.
The gel is covered with a nylon membrane and a piece of absorbent paper.
The DNA is drawn up onto the membrane by capillary action and fixed in
position by UV light.
Radioactive gene probes (with a complementary base sequence to the
core sequences) are added different probes for different core sequences.
The probe will bind to the sections being looked for I they are present, if
they are not the gene probe will wash away (it has not bonded)
X-ray film is placed over the membrane. The remaining DNA will develop a
pattern of bonds, each one corresponding to the position of the DNA
fragments.
Interpreting results
If there seems to be a match, a machine auto-scans the fingerprint, and
calculates the odds of someone else having the same print.
DNA sequencing
Modify the 4 bases A, G, T, & C so that they cannot attach to the next base
in the sequence terminator nucleotides.
Put identical single strands (clones) of the DNA to be tested in each of 4
test tubes.
Add the nucleotides A G T & C
AAdd a small quantity of A terminator to test tube 1, and G T & C
terminators to test tubes 2 3 & 4
Add a *primer to start DNA synthesis
DNA polymerase is also added to catalyse the DNA synthesis.
The normal A competes with A* in test tube 1, randomly- so different sized
fragments form all ending in A.
All the *lengths of DNA are collected.
Restriction Mapping
A piece of DNA is cut with a series of known restriction endonucleases. Each
enzyme will make the cut at its own recognition site.
For a piece of DNA that has only one recognition site for each enzyme, each will
make only one cut.
If they are used in pairs, the cut lengths will differ depending on the pairing
chosen each time.
Uses
For 2 similar DNA where one DNA sequences is known; the degree of overlap can
be determined, meaning that only some of the DNA sample has unknown base
sequence far less work.
tRNA caries a specific amino acid; Amino acids joined by peptide bonds by
condensation reaction;
Plasmid = Small; circular piece of DNA; in prokaryote; that carries resistance
genes;
RNA polymerase; ataches to start of gene; H0bonds break one DNA strand is
used as template; it has complementary base pairings; the DNA base sequence
is copied into mRNA; introns are removed;
Oestrogen inhibits production of FSH; so preventing follicle development;
therefore ovulation;
Negative feedback = process that returned a certain level back to normal e.g.
returning body temp back to normal when cold or hot.
Totipotency & Cell specialisation
All cells contain the same genes, meaning that every cell can produce everything
that the body makes potentially.
-Some genes are permanently switched on e.g. for enzymes involved in
respiration.
-some genes are permanently switched off, e.g. insulin production gene in
the heart muscle cell.
Zygote Cells
A fertilized egg (zygote) and the first few cells produced from it have the ability
to develop into any type of cell in the body.
They are called totipotent cells.
Later these cells differentiate and become specialised for different functions.
(e.g. muscle clells to contract, bone cells for strength) ie the genes coding for
proteins to make the specialisation are switched on, extraneous genes are turned
off.
Turning off genes
There are two main ways of doing this.
-Preventing transcription and hence the production of mRNA.
-Breaking down the mRNA before its genetic code is translated.
can specialised cells ever develop into a different type of cell?
-Xylem, red blod cells have no nuclei no they have lost their DNA and
have no genes at all.
-Mature specialised cell lost their totipotency.
- Adult mammals have a few totipotent cells ie undifferentiated cells
capable of dividing e.g. skin, inner lining of small intestine, bone marrow. Bone
marrow cells make blood cells. Also embryonic stem cells.
-Under certain conditions stem cells can deveop into other types of cells.
They can be used to treat some disorders e.g. sickle cell anaemia.
Plants
Mature plants have many totipotent ells. E.g. a carrot root cell on nutrient
medium with appropriate hormones added it will form small carrot plants. This is
In vitro culturing and the new plant is a clone of the original plant.
-This charge different is a result of the distribution of four ions, K +, Na+, Cl-, and
COO- (protein).
-The protein is made inside cells and cant easily escape.
-Th ecell membrane contains sodium pumps using ATP energy for their active
transport. 3x Na+out of the cell, only 2K+ in. This creates a more negative charge
inside the cell.
-K+ concentration inside the cell and associate with protein (COO -) to try to
maintain electrochemical neutrality.
-Cl- accompanies Na+ ion gates within the membrane which provides a route
whereby K can escape along its diffusion greadient as they are not completely
closed. Relatievly few K+ escape however because they are still attracted to
overall negative charge inside the cell (also Na + gates but they are completely
closed.)
-This means slight positive charge is set up outside the cell membrane making
the inside more negative with respect to the ouside i.e. we have resting
potential, charge different of -70mV.
Na+ gate
COO-
K+ gate
3xNa
+
2xK
+
Cl+
Na+ pump
-Depolarisation takes place. This is when the charge acros the membrane is
reversed to give a positive charge inside the cell.
- The proteins making the ion channels change shape and open or close
depending upon the voltage across the membrane (voltage gated channels)
-The energy of the stimulus causes sodium ion channels to open and massive
amounts of sodium ions diffuse in along their concentration gradient such that
the positive charge they carry first neutralised the negatively charged interior
then reverses it ie depolarises it.
-Once a few sodium ions (Na+) gates have opened, and Na+ started to diffuse in,
many more Na+ gates open to positive feed back.
-When some Na+ have entered a generator potential has been produced.
Eventually so many Na+ have entered, and the interio is so positive with respect
to outside that the threshold value has ben passed and an action potential is
formed.
-The action potential is at around +40mV.
-Cl- is left behind with its negative charge thus making a potential difference
between the inside and outside of the cell which is the reverse of the resting
potential.
Na+ huge
amounts
COO-
K
+
ClAction Potential ^
Repolarisation
-Na+ gates close now.
- K+ gates open and there is a diffusion out of K + along its diffusion and electrical
gradient, from the interior of the neurone. This causes more K + gates to open
and a massive outward diffusion of K+ so that the cell interior is once again
negative.
-The is a temporary K+ over shoot which causes the membrane potential to
become slightly more negative in the cell then at resting potential. This is called
Hyperpolarisation.
-K+ gates close now. Na+ pumps which exchange sodium for K+ will re-establish
the normal Na and K distributions once more. This is the resting potential.
NB
-For a short time after an action potential a further action potential cannot be
generated. The Na+ and K+ channels have to reshape themselves. This is called
the refractory period.
Repolarisation
K+ Huge
Amount
3xNa+
2xK+