Antibacterial 3
Antibacterial 3
Antibacterial 3
MONOBACTAMS
-LACTAMASE INHIBITORS
1. Thienamycin (Carbapenems)
Acylamino side
chain absent
OH
Plays a role
in -lactamase
resistance
Opposite
stereochemistry
to penicillins
Merck 1976
Carbon
H
H
H3C
NH3
S
N
O
CO2
Carbapenam nucleus
1. Thienamycin
Thienamycin analogues used in the clinic
H OH
Me
H OH
Me
H OH
Me
NH
HN
Imipenem
N
CO2
H
N
O
C
Me
Meropenem
Me
S
N
CO2
H
N
Me
O
C
Ertapenem(2002)
N
CO2
CO2
In general, the carbapenems have the broadest spectrum of ac=vity of all the -lactam an=bio=cs
2. Monobactams
Nocardicins (Fujisawa 1975)
HO2C
D
HC
H2N
O
CH2
OH
H
N
CH2
H
OH
Nocardicin A
N
C
O
H
CO2H
2. Monobactams
Clinically useful monobactam
Me
N
Me
CO2H
O
H
N
Me
Aztreonam
H2N
S
N
O
SO3-
3. -Lactamase inhbitors
-Lactams as substrates/inhibitors of Transpeptidases and -Lactamases
Hydrophobic barrier
Outer
membrane
Porin
Lactamase
enzymes
L
L
Periplasmic
space
Cell
membrane
Cell
3. -Lactamase Inhibitors
Clavulanic acid (Beechams 1976)
Sulphur replaced by O
No acylamino
side chain
6
7
OH
3
2
H
CO2H
-Lactam
Oxazolidine ring
3. -Lactamase Inhibitors
Clavulanic acid - mechanism of action
1
NH
NH
CH2OH
O
CH2OH
N
O
HN
Base
CO2H
O
OH
CO2H
CH2OH
H2N
NH
NH
O
HN
NH
CO2H
CH
CH2OH
HC
O
CO2H
Irreversibly blocked
3. -Lactamase Inhibitors
Penicillanic acid sulfone derivatives
O
S
Me
2
3
Me
CO2 Na
Sulbactam
Me
N
N
CO2
Tazobactam
Next-genera/on inhibitors
CYCLOSERINE
BACITRACIN
VANCOMYCIN
VANCOMYCIN ANALOGUES
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Crosslinking
Cell
membrane
Cytoplasm
Bacitracin
Vancomycin
...
.
Transglycosida/on
Gly
NAG
Carrier
lipid
L-Ala
D-Glu
L-Lys
NAM
L-Ala
Amino acid
D-Ala
Cycloserine
D-Ala- D-Ala
2. D-Cycloserine
-Lactams
..
..
...
..
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...
...
...
...
...
...
...
...
Crosslinking
Cell
membrane
Cytoplasm
Bacitracin
Vancomycin
...
.
Transglycosida/on
Gly
NAG
Carrier
lipid
L-Ala
D-Glu
L-Lys
NAM
L-Ala
Amino acid
D-Ala
Cycloserine
D-Ala- D-Ala
2. D-Cycloserine
H
N
HO
O
H
NH2
D-Cycloserine
Me
O
H
NH2
D-Alanine
3. Bacitracin
-Lactams
..
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...
...
...
Crosslinking
Cell
membrane
Cytoplasm
Bacitracin
Vancomycin
...
.
Transglycosida/on
Gly
NAG
Carrier
lipid
L-Ala
D-Glu
L-Lys
NAM
L-Ala
Amino acid
D-Ala
Cycloserine
D-Ala- D-Ala
..
..
...
..
...
...
..
...
...
...
...
...
...
...
...
Crosslinking
Cell
membrane
Cytoplasm
Bacitracin
Vancomycin
...
.
Transglycosida/on
Gly
NAG
Carrier
lipid
L-Ala
D-Glu
L-Lys
NAM
L-Ala
Amino acid
D-Ala
Cycloserine
D-Ala- D-Ala
CH2OH
Me
H3N
HO
HO
Me
O
HO
O
OH H3C
Cl
O
H
N
H
N
Vancomycin
Cl
H H
N
CO2
CH3
O
H
O
N
O
H
N
H
N
H
H
NH2Me
Peptide chain
CONH2
HO
OH
OH
C hlorinatio n
H ydroxylation
OH
O
HO2C
H
N
H
N
N
H
O
HO
H ydroxylation
Tyr
Tyr
O
H
N
N
H
O
H2NOC
NHMe
N
H
O
Asn
Val
OH
OH
Oxidative couplings
Vancomycin
Building
block
Cell
membrane
Notes
Vancomycin provides binding pocket for tail of biosynthetic building block
Vancomycin binds to the tail of the building blocks peptide chain
Caps the building block
Disguises the building block from the transglycosidation enzyme
..
..
.
.
.
..
.
Vancomycin
dimer
Building
block
Dimerisation occurs
Dimer is highly stable
Large vancomycin molecule
acts as a steric shield
CH2OH
Me
H3N
HO
HO
Me
Cl
O
C
HO
O
D
OH H3C
Cl
O
H
N
H
N
H H
N
O
H
O
N
O
H
CO2
N
H
CH3
N
H
H
NH2Me
CONH2
A
HO
OH
OH
O
Cell wall building block
H
N
H
Me
N
O Me
H-bonding interactions
between the peptide backbone
of vancomycin and the
biosynthetic building block
O
L-Lys-D-Ala-D-Ala
'tail'
Heptapeptide
backb one
R1
H
N
N
O
Me
R7
H
O
N
R4
R2
R6
H
O
CO2
O
R6
R2
R4
O
N
R5
N
H
H
N
H
Me
R1
NH2Me
N
O Me
H
H
R3
O
N
R7
Cell
Cellwall
wallbuilding
buildingblock
block
N
N
O2C
R5
N
D-Ala-D-Ala-L-Lys- tail
R3
NH2Me
H
N
Me
O
H
L-Lys-D-Ala-D-Ala tail
Heptapeptide
backb one
O
Cell wall building block
H
N
H
Me
O
H
N
O Me
L-Lys-D-Ala-D-Ala
Mutation
O
Cell wall building block
N
H
O Me
H
tail
L-Lys-D-Ala-D-Lactate
Me
tail
O
H
HO
CH2OH
Alkyl anchor
HO
N
H
OH
HO
O
O
NHAc
C
HO
O
O
Cl
E
OH
Cl
O
H
N
H
Heptapeptide backbone
N
H H
N
O
N
H
CO2
O
NH3
O
H
N
H
B
OH
HO
A
HO
O
HO
OH
O
OH
HO
OH
Teicoplanin
Building
block
Cell
membrane
Me
HO
HO
Me
H3N
CH2OH
HO
O
O
Me
O
Me
Cl
HO
H
N
H
N
OH H3C
O
O
H H
N
CO2
O
H
O
N
O
H
N
H
H
CONH2
HO
OH
OH
N
H
H
NH2Me
CH3
CH2 NH2 Me
HO
Me
H3N
HO
CH2OH
HO
O
O
Me
O
Me
Cl
HO
H
N
H
N
OH H3C
Cl
O
O
H H
N
O
H
O
N
CO2
CH3
O
H
N
H
N
H
H
NH2Me
CONH2
HO
OH
OH
HO
Me
CH2OH
HO
O
O
Cl
HO
Hydrophobic tail
OH H3C
Cl
O
H
N
H
N
H H
N
O
H
O
N
CO2
CH3
O
H
N
H
N
H
H
NH2Me
CONH2
OH
OH
HO
N
H
O
P
OH
OH
OH
O
H3C
O
AA1-AA2-AA3
H
N
O
N
O
H
N
H
CONH2
N
H
H
NH2Me
CH3
..
..
...
..
...
...
..
...
...
...
...
...
...
...
...
Crosslinking
Cell
membrane
Cytoplasm
Bacitracin
Vancomycin
...
.
Transglycosida/on
Gly
Carrier
lipid
L-Ala
D-Glu
L-Lys
NAM
L-Ala
Amino acid
D-Ala
Cycloserine
D-Ala- D-Ala
NAG
Aminoglycoside
Tetracycline
Chloramphenicol
Macrolide
Lincosamide
Streptogramins
Oxazolidinones
Aminoglycosides: streptomycin
Oxazolidinones
Synthe=c
an=bio=cs
Linezoid
(rst
of
this
class
of
compounds),
in
2000;
$
716
m
ne^ng
sales
by
2010;
bacteriosta=c
against
gram-posi=ve
bacteria
including
MRSA,
VER
and
Streptococcus
pneumoniae;
Serious
adverse
eects:
bone
marrow
suppression,
peripheral
and
op=c
neuropathy,
lac=c
acidosis
and
serotonin
syndrome.
Radezolid,
10,000
=mes
more
potent
(in
clinical
trials)
The
oxazolidinones
bind
to
the
50S
ribosomal
subunit
and
interfere
with
forma=on
of
the
complex
that
associates
the
mRNA,
the
f-met-tRNA,
and
the
50S
ribosomal
subunits
Bacterial
resistance
An=microbial
compounds
almost
always
require
access
into
the
bacterial
cell
to
reach
their
target
site
where
they
can
interfere
with
the
normal
func=on
of
the
bacterial
organism.
Porin
channels
are
the
passageways
by
which
these
an=bio=cs
would
normally
cross
the
bacterial
outer
membrane.
Some
bacteria
protect
themselves
by
prohibi=ng
these
an=microbial
compounds
from
entering
past
their
cell
walls.
For
example,
a
variety
of
Gram-
nega=ve
bacteria
reduce
the
uptake
of
certain
an=bio=cs,
such
as
aminoglycosides
and
beta
lactams,
by
modifying
the
cell
membrane
porin
channel
frequency,
size,
and
selec=vity.
Prohibi=ng
entry
in
this
manner
will
prevent
these
an=microbials
from
reaching
their
intended
targets
that,
for
aminoglycosides
and
beta
lactams,
are
the
ribosomes
and
the
penicillin-binding
proteins
(PBPs),
respec=vely.
This
strategy
have
been
observed
in:
Pseudomonas
aeruginosa
against
imipenem
(a
beta-lactam
an=bio=c)
Enterobacter
aerogenes
and
Klebsiella
spp.
against
imipenem
Vancomycin
intermediate-resistant
S.
aureus
or
VISA
strains
with
thickened
cell
wall
trapping
vancomycin
Many
Gram-nega=ve
bacteria
against
aminoglycosides
Many
Gram-nega=ve
bacteria
against
quinolones
Bacterial
resistance
To
be
eec=ve,
an=microbial
agents
must
also
be
present
at
a
suciently
high
concentra=on
within
the
bacterial
cell.
Some
bacteria
possess
membrane
proteins
that
act
as
an
export
or
eux
pump
for
certain
an=microbials,
extruding
the
an=bio=c
out
of
the
cell
as
fast
as
it
can
enter.
This
results
in
low
intracellular
concentra=ons
that
are
insucient
to
elicit
an
eect.
Some
eux
pumps
selec=vely
extrude
specic
an=bio=cs
such
as
macrolides,
lincosamides,
streptogramins
and
tetracyclines,
whereas
others
(referred
to
as
mul=ple
drug
resistance
pumps)
expel
a
variety
of
structurally
diverse
an=-infec=ves
with
dierent
modes
of
ac=on.
This
strategy
has
been
observed
in:
E.coli
and
other
Enterobacteriaceae
against
tetracyclines
Enterobacteriaceae
against
chloramphenicol
Staphylococci
against
macrolides
and
streptogramins
Staphylococcus
aureus
and
Streptococcus
pneumoniae
against
uoroquinolones
Eux
pumps
These
eux
pumps
are
variants
of
membrane
pumps
possessed
by
all
bacteria,
both
pathogenic
and
non-pathogenic,
to
move
lipophilic
or
amphipathic
molecules
in
and
out
of
the
cells.
Some
are
used
by
an=bio=c
producers
to
pump
an=bio=cs
out
of
the
cells
as
fast
as
they
are
made,
and
so
cons=tute
an
immunity
protec=ve
mechanism
for
the
bacteria
to
prevent
being
killed
by
their
own
chemical
weapons
(Walsh,
2000)
Bacterial resistance
Bacterial
resistance
Some
resistant
bacteria
evade
an=microbials
by
reprogramming
or
camouaging
cri=cal
target
sites
to
avoid
recogni=on.
Therefore,
in
spite
of
the
presence
of
an
intact
and
ac=ve
an=microbial
compound,
no
subsequent
binding
or
inhibi=on
will
take
place.
This
strategy
has
been
observed
in:
Staphylococci
against
methicillin
and
other
beta-
lactams
(Changes
or
acquisi=on
of
dierent
PBPs
that
do
not
suciently
bind
beta-lactams
to
inhibit
cell
wall
synthesis.)
Enterococci
against
vancomycin
(altera=on
in
cell
wall
precursor
components
to
decrease
binding
of
vancomycin)
Mycobacterium
spp.
against
streptomycin
(modica=on
of
ribosomal
proteins
or
of
16s
rRNA)
Muta=ons
in
RNA
polymerase
resul=ng
in
resistance
to
the
rifamycins;
Muta=ons
in
DNA
gyrase
resul=ng
in
resistance
to
quinolones
Target
Resistance mechanism
Enzyme MurA
Destruc=on
by
ring-opening
expoxidase;
muta=onal
inac=va=on
of
the
glycerophosphate
transporter
Cycloserine
Moenomycin
Transglycosylase
Bacitracin
Undecaprenol
pyrophosphate
(UPP)
Vancomycin
D-Ala-D-Ala
on
lipid
II
pentapep=de
Penicillins/
Cephalosporins/
Carbapenems/
Monobactams
Target
Resistance mechanism
Streptomycin
(aminoglycoside)
Chlortetracycline
(tetracycline)
16S rRNA
Puromycin
An=metabolite
of
aminoacyl-tRNA
Modied
by
puromycin
acetyltransferase
Target
Resistance mechanism
Mupirocin
Oxazolidinones
23S rRNA
Chloramphenicol
23S rRNA
Modied
by
chloramphenicol
acetyltransferases;
muta=on
of
porins
Pleuromu=lin
23S rRNA
Erythromycin
(macrolide)
23S rRNA
Lincomycin
(lincosamide)
23S rRNA
Streptogramin
23S rRNA
Target
Resistance mechanism
DNA gyrase
Nalidixic acid
DNA gyrase
Rifampicin
RNA polymerase
Metronidazole
DNA strands
Trimethoprin
Dihydrofolate
reductase
(DHFR)
Polymyxin B
Lipid
A
core
of
lipopolysaccharide
(LPS)
Modica=ons on LPS
Daptomycin
Phospha=dylglycerol
in
cytoplasmic
membrane
An=bio=c drug discovery and development ow chart adapted from literature versions
Synthe=c
tailoring
of
an=bio=c
core
structures
leading
to
successive
genera=ons
of
an=bio=c
classes
has
been
the
mainstay
of
an=bio=c
drug
development
for
the
past
50
years.
Core
scaolds
are
shown
in
black
and
peripheral
chemical
deriva=za=ons
are
shown
in
white.
The
quinolone/uoroquinolone
scaolds
are
of
synthe=c
origin,
while
all
other
scaolds
are
natural
products
or
their
semisynthe=c
deriva=ves.