Irpex Lacteus, and Degradation of Polycyclic Aromatic Hydrocarbons
Irpex Lacteus, and Degradation of Polycyclic Aromatic Hydrocarbons
Irpex Lacteus, and Degradation of Polycyclic Aromatic Hydrocarbons
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Research in Microbiology ()
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Abstract
The white-rot fungus Irpex lacteus has been reported to be an efficient degrader of polycyclic aromatic hydrocarbons, polychlorinated biphenyls
and pentachlorophenol. The fungus produces ligninolytic enzymes laccase, lignin peroxidase and manganese peroxidase (MnP), the latter being
the major one produced. MnP was purified using anion exchange and size exclusion chromatography. SDSPAGE showed the purified MnP to be
a monomeric protein of 37 kDa (37.5 kDa using MALDI-TOF) with an isoelectric point at 3.55. The pH optimum was relatively broad, from 4.0
to 7.0 with a peak at pH 5.5. Kinetic constants Km were 8 M for H2 O2 and 12 or 31 M for Mn2+ depending on the substrate. The enzyme did
not perform oxidation in the absence of H2 O2 or Mn2+ . MnP was active at 570 C with an optimum between 5060 C. At temperatures above
65 C the enzyme rapidly lost activity. Degradation of four representatives of PAHs (phenanthrene, anthracene, fluoranthene, and pyrene) was
tested and the enzyme showed the ability to degrade them in vitro. Major degradation products of anthracene were identified. The results confirm
the role of MnP in PAH degradation by I. lacteus, including cleavage of the aromatic ring.
2005 Elsevier SAS. All rights reserved.
Keywords: Anthracene; Biodegradation; Irpex lacteus; Manganese peroxidase; Polycyclic aromatic hydrocarbons
1. Introduction
Fungal oxidases and peroxidases have been suggested to
play a key role in lignin degradation [12,36] and to enable
their producersthe wood- and litter-decomposing fungito
detoxify xenobiotic compounds by partial degradation or complete mineralization [26]. Due to their broad substrate specificity, ligninolytic enzymes are capable of transforming many
structurally different pollutants including synthetic dyes, polychlorinated biphenyls, nitrated explosives, pesticides, polymers
and polycyclic aromatic hydrocarbons (PAHs) [25,26].
Among the pollutants degraded by white-rot fungi, PAHs
have attracted particular attention in the last decades, since carcinogenic substances may be formed during biotransformation
of PAHs in humans and microorganisms [8]. PAHs are formed
* Corresponding author.
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degradation is by performing degradation with isolated enzymes together with identification of degradation products.
The white-rot basidiomycete Irpex lacteus has been reported
to be very efficient in binding pentachlorophenol to humic substances during soil bioremediation, as well as in the degradation
of polychlorinated biphenyls and polycyclic aromatic hydrocarbons [15,23]. Laccase, lignin peroxidase and Mn peroxidase
activities were found under different culture conditions [34,35]
and lignin peroxidase of the fungus has been purified and characterized [27]. The aim of this work was to isolate and characterize Mn peroxidase, produced by I. lacteus as the major
ligninolytic enzyme under most culture conditions, to test its
ability to degrade PAHs and to identify the degradation products.
2. Materials and methods
2.1. Chemicals
Anthracene, fluoranthene, phenanthrene, pyrene, 2,2 -azinobis-3-ethylbenzothiazoline-6-sulfonic acid, diammonium salt
(ABTS), ethylenediaminetetraacetate (EDTA), 3-methyl2-benzothiazolinone hydrazone (MBTH) and 3,3-dimethylaminobenzoic acid (DMAB) were purchased from Sigma
(USA). The purities of PAH compounds were 97% or higher.
Acetonitrile and acetone were of gradient grade (Merck, Germany). All other chemicals were of the highest grade available.
2.2. Organism and culture conditions
The wood-rotting basidiomycete I. lacteus CCBAS238 was
obtained from the Culture Collection of Basidiomycetes (Institute of Microbiology AS CR, Prague). The fungus was maintained on MEG agar slants (per liter: 5 g malt extract, 10 g
glucose, 15 g agar, pH 4.5). Static cultivations in the liquid
medium were performed in 250 ml Erlenmeyer flasks containing 20 ml of liquid MEG medium. Flasks were inoculated with
two 7-mm agar plugs with mycelium and the cultivation proceeded at 28 C in the dark without aeration. Each sampling
day 200 l samples of culture liquid were removed from the
cultures under sterile conditions, filtered and used for enzyme
assays. Measurements were performed in triplicate. For the purification of MnP, cultivation proceeded for 30 days under the
same conditions.
2.3. Enzyme assays
Activity of manganese peroxidase (EC 1.11.1.13, MnP) was
assayed in succinatelactate buffer (SLB, 100 mM, pH 4.5).
MBTH and DMAB were oxidatively coupled by the action of
the enzyme and formation of a purple indamine dye product
was followed spectrophotometrically at 590 nm [21]. The results were corrected by activities in test samples without manganese where manganese sulfate was substituted by EDTA to
chelate Mn present in the extract. Laccase (EC 1.10.3.2) activity was measured by monitoring the oxidation of ABTS in
100 mM citrate200 mM phosphate buffer, pH 5.0 [22]. The
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3. Results
The white-rot fungus I. lacteus produced the ligninolytic
enzymes laccase, lignin peroxidase and MnP during the stationary cultivation in MEG media. All three enzymes reached their
maxima after about 20 days of incubation. The fungus showed
a very low activity of laccase (12 U l1 ) and lignin peroxidase
(6 U l1 ). MnP was the dominant ligninolytic enzyme with an
average activity of 270 U l1 (results not shown).
The course of purification is summarized in Table 1. After all
purification steps MnP activity appeared as a single peak. The
purified enzyme appeared as a single band on SDSPAGE and
IEF. The molecular mass was 37 kDa by SDSPAGE, MALDITOF yielded a single peak with a molecular mass 37.5 kDa.
Isoelectric focusing showed one band around pH 3.55 (Fig. 1)
and activity staining confirmed that it was MnP.
MnP showed its highest activity at pH 5.56.5 while relatively strong activity (more than 60% of the maximum) was
present at a broad pH range 4.07.0. (Fig. 2). Temperature optimum was observed at 5060 C and the enzyme was not active
above 70 C (Fig. 3). A rapid loss of activity occurred at temperatures higher than 65 C.
The enzyme exhibited the following kinetic characteristics:
Km for H2 O2 was 8 M with both DMAB/MBTH and ABTS as
substrates, Km for Mn2+ was 12 M with DMAB/MBTH and
31 M with ABTS. The Km for ABTS was 1560 M and the
enzyme exhibited neither DMAB/MBTH nor ABTS oxidation
in the absence of hydrogen peroxide or Mn2+ .
To study degradation of selected PAHs we tested their solubility in a mixture of acetonewater with various ratios and we
Table 1
Purification of manganese peroxidase from the straw extract of I. lacteus
Purification step
Total
protein
(g)
Total
activity
(mU)
Specific
activity
(mU g1 )
Yield
(%)
Culture filtrate
DEAE Sepharose, pH 6.0
Mono Q HR 5/5, pH 6.0
Mono Q HR 5/5, pH 7.5
Superdex 75 HR 10/30, pH 4.5
Mono Q HR 5/5, pH 4.5
3829
1895
756
388
203
120
5550
4100
3200
1990
1100
960
1.4
2.2
4.2
5.1
5.3
8.0
100.0
73.8
57.6
35.8
19.4
17.3
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Fig. 2. Effect of pH on the activity of MnP from I. lacteus. The activity was
examined in the pH range 2.57.5 in 0.1 M citrate0.2 M phosphate buffer with
DMAB and MBTH as substrates at 25 C. Relative activity is given (maximum
activity = 100%).
also measured MnP activity with respect to inhibition by acetone. Following these results (data not shown) we selected for
further experiments a mixture with 20% acetone that was sufficient to dissolve 15 g ml1 of each PAH compound and caused
less than 20% enzyme inhibition. The activity of the enzyme
during experiments in the watersolvent mixture was stable.
The degradation results of individual compounds are shown in
Table 2. Among all PAHs tested only ANT exhibited a concentration decrease after 168 h to 10.1 g ml1 in the control
treatment without the enzyme. The enzyme was able to decompose all the studied PAHs at different rates. While ANT and
PYR were degraded extensively to 0 and 8.3% of their original
concentration, recovery of PHE and FLT after 168 h of degradation was 56 and 58.1%, respectively.
We also tried to identify the major degradation products of the studied PAHs, but we were able to detect major distinct peaks only for ANT. Their mass spectral characteristics are given in Table 3 and they were identified as
anthrone, 9,10-anthracenedione, and 2-(2 -hydroxybenzoyl)benzoic acid, respectively. The first two degradation products
were also identified using a relevant chemical standard and
2-(2 -hydroxybenzoyl)-benzoic acid was characterized using
the MS/MS mode as shown in our previous work [5]. No formation of phthalic acid was detected. The sequence of degradation,
proposed on the basis of subsequent oxidation of identified
metabolites and the results of ANT degradation by whole cultures [5], is shown in Fig. 4. Degradation of the other PAHs did
not yield major peaks and it was thus impossible to identify the
products. Even pyrenediones or similar compounds that could
be anticipated were not detected.
Fig. 3. Effect of temperature on the activity of MnP from I. lacteus. The enzyme
reaction was performed in succinate-lactate buffer, pH 4.5 using DMAB and
MBTH as substrates. Relative activity is given (maximum activity = 100%).
4. Discussion
Table 2
Recovery of individual PAHs (in percent of the original concentration) after
3168 h incubation with MnP from I. lacteus
Time (h)
3
6
10
24
146
168
Recovery (%)
Phenanthrene
Anthracene
Fluoranthene
Pyrene
92.7 1.0
90.2 1.1
87.2 1.5
82.0 6.9
65.5 9.9
56.0 2.6
6.0 0.7
5.8 0.8
2.4 0.2
0.2 0.2
0.1 0.0
0.0 0.0
78.2 8.3
74.9 6.0
72.7 6.4
72.1 8.8
61.3 6.8
58.1 5.9
57.6 5.2
46.2 2.8
39.8 3.9
31.2 4.4
10.7 1.6
8.3 1.4
Initial concentration of PAHs was 15 g ml1 and 150 mU ml1 MnP was
used. The data represent means and standard errors of five replicate estimations.
Mn peroxidase from I. lacteus was the major ligninolytic enzyme produced in liquid culture. It ranged among the smallest
MnPs, with its molecular weight similar to Abortiporus biennis
and Trametes spp. [13], belonging to the group of MnPs with
acidic isoelectric points, e.g., Agaricus bisporus, Bjerkandera
adusta and Phanerochaete flavido-alba [7,16,24]. The pH optimum of the enzyme was broad and slightly higher than that
of other MnPs purified so far; also, the temperature optimum
was relatively high, although the stability at elevated temperatures was low. The Km for both H2 O2 and Mn2+ was similar to
that of Pleurotus ostreatus and Phanerochaete chrysosporium
enzymes [24,29], while that for ABTS was much higher than
the values reported for other fungi [33,38].
Table 3
Gas chromatographymass spectrometry identification of metabolites of anthracene degradation by MnP from I. lacteus: retention data and mass spectral characteristics of anthracene metabolites
No.
tR
(min)
MW according
to CI
Structural suggestion
1
2
3
13
13.51
14.61
194
208
242
Anthrone
9,10-Anthracenedione
2-(2 -Hydroxybenzoyl)-benzoic acid
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Acknowledgements
This work was supported by the grants KJB6020308 and
KJB600200516 from the Grant Agency of the Academy of Science of the Czech Republic and by the Institutional Research
Concept No. AV0Z50200510 of the Institute of Microbiology,
ASCR.
References
[1] L. Bezalel, Y. Hadar, C.E. Cerniglia, Mineralization of polycyclic aromatic hydrocarbons by the white-rot fungus Pleurotus ostreatus, Appl.
Environ. Microbiol. 62 (1996) 292295.
[2] L. Bezalel, Y. Hadar, P.P. Fu, J.P. Freeman, C.E. Cerniglia, Metabolism of
phenanthrene by the white-rot fungus Pleurotus ostreatus, Appl. Environ.
Microbiol. 62 (1996) 25472553.
[3] B.L. Bogan, R.T. Lamar, One-electron oxidation in the degradation of
creosote polycyclic aromatic hydrocarbons by Phanerochaete chrysosporium, Appl. Environ. Microbiol. 61 (1995) 26312635.
[4] B.W. Bogan, R.T. Lamar, Polycyclic aromatic hydrocarbon-degrading capabilities of Phanerochaete laevis HHB-1625 and its extracellular ligninolytic enzymes, Appl. Environ. Microbiol. 62 (1996) 15971603.
[5] T. Cajthaml, M. Mder, P. Kacer, V. aek, P. Popp, Study of fungal
degradation products of polycyclic aromatic hydrocarbons using gas chromatography with ion trap mass spectrometry detection, J. Chromatogr.
A 974 (2002) 213222.
[6] P.J.J. Collins, M.J.J. Kotterman, J.A. Field, D.W. Dobson, Oxidation of anthracene and benzo(a)pyrene by laccase from Trametes versicolor, Appl.
Environ. Microbiol. 62 (1996) 45634567.
[7] T. de la Rubia, A. Linares, J. Perez, J. Munoz-Dorado, J. Romera, J. Martinez, Characterization of manganese-dependent peroxidase isoenzymes
from the ligninolytic fungus Phanerochaete flavido-alba, Res. Microbiol. 153 (2002) 547554.
[8] A. Dipple, S.C. Cheng, C.A.H. Bigger, in: M.W. Pariza, H.U.
Aeschbacher, J.S. Felton, S. Sato (Eds.), Mutagens and Carcinogens in
the Diet, WileyLiss, New York, 1990, pp. 109127.
[9] J.A. Field, H. Ronald, J. Vledder, G. van Zelst, W.H. Rulkens, The tolerance of lignin peroxidase and manganese-dependent peroxidase to miscible solvents and the in vitro oxidation of anthracene in solvent: Water
mixtures, Enzyme Microb. Technol. 18 (1996) 300308.
[10] J.A. Field, R.H. Vledder, J.G. van Zeist, W.H. Rulkens, The tolerance of
lignin peroxidase and manganese-dependent peroxidase to miscible solvents and the in vitro oxidation of anthracene in solvent: Water mixtures,
Enzyme Microb. Technol. 18 (1996) 300308.
[11] K.E. Hammel, B. Green, W.Z. Gai, Ring fission of anthracene by a eukaryote, Proc. Natl. Acad. Sci. USA 88 (1991) 1060510608.
[12] A. Hatakka, Lignin-modifying enzymes from selected white-rot fungi:
Production and role in lignin degradation, FEMS Microbiol. Rev. 13
(1994) 125135.
[13] M. Hofrichter, Review: Lignin conversion by manganese peroxidase
(MnP), Enzyme Microb. Technol. 30 (2002) 454466.
[14] M. Hofrichter, K. Scheibner, I. Schneegass, W. Fritsche, Enzymatic combustion of aromatic and aliphatic compounds by manganese peroxidase
from Nematoloma frowardii, Appl. Environ. Microbiol. 64 (1998) 399
404.
[15] S.S. Hwang, H.G. Song, Biodegradation of pyrene by the white rot fungus,
Irpex lacteus, J. Microbiol. Biotechnol. 10 (2000) 344348.
[16] V.P. Lankinen, A.M. Bonnen, L.H. Anton, D.A. Wood, N. Kalkkinen,
A. Hatakka, C.F. Thurston, Characteristics and N-terminal amino acid sequence of manganese peroxidase from solid substrate cultures of Agaricus
bisporus, Appl. Microbiol. Biotechnol. 55 (2001) 170176.
[17] A. Majcherczyk, C. Johannes, A. Huttermann, Oxidation of polycyclic
aromatic hydrocarbons (PAH) by laccase of Trametes versicolor, Enzyme
Microb. Technol. 22 (1998) 335341.
[18] M.A. Moen, K.E. Hammel, Lipid peroxidation by the manganese peroxidase of Phanerochaete chrysosporium is the basis for phenanthrene
ARTICLE IN PRESS
resmic2370
[19]
[20]
[21]
[22]
[23]
[24]
[25]
[26]
[27]
[28]
[29]
[30] A. Schtzendbel, A. Majcherczyk, C. Johannes, A. Httermann, Degradation of fluorene, anthracene, phenanthrene, fluoranthene, and pyrene
lacks connection to the production of extracellular enzymes by Pleurotus ostreatus and Bjerkandera adusta, Int. Biodeter. Biodegrad. 43 (1999)
93100.
[31] R.C. Sims, M.R. Overcash, Fate of polynuclear aromatic compounds
(PNAs) in soilplant systems, Residue Rev. 88 (1983) 168.
[32] K.T. Steffen, A. Hatakka, M. Hofrichter, Degradation of benzo[a]pyrene
by the litter-decomposing basidiomycete Stropharia coronilla: Role of
manganese peroxidase, Appl. Environ. Microbiol. 69 (2003) 39573964.
[33] K.T. Steffen, M. Hofrichter, A. Hatakka, Purification and characterization
of manganese peroxidases from the litter-decomposing basidiomycetes
Agrocybe praecox and Stropharia coronilla, Enzyme Microb. Technol. 30
(2002) 550555.
[34] H. Tanaka, S. Itakura, A. Enoki, Hydroxyl radical generation and phenol
oxidase activity in wood degradation by the white-rot basidiomycete Irpex
lacteus, Mater. Organismen 33 (1999) 91105.
[35] M. Tekere, R. Zvauya, J.S. Read, Ligninolytic enzyme production in
selected sub-tropical white rot fungi under different culture conditions,
J. Basic Microbiol. 41 (2001) 115129.
[36] T. Vares, O. Niemenmaa, A. Hatakka, Secretion of ligninolytic enzymes
and mineralization of 14 C-ring-labeled synthetic lignin by three Phlebia
tremellosa strains, Appl. Environ. Microbiol. 60 (1994) 569575.
[37] B.R.M. Vyas, S. Bakowski, V. aek, M. Matucha, Degradation of anthracene by selected white-rot fungi, FEMS Microbiol. Ecol. 14 (1994)
6570.
[38] Y.X. Wang, R. Vazquez-Duhalt, M.A. Pickard, Purification, characterization, and chemical modification of manganese peroxidase from Bjerkandera adusta UAMH 8258, Curr. Microbiol. 45 (2002) 7787.
[39] M. Wolter, F. Zadrazil, R. Martens, M. Bahadir, Degradation of eight
highly condensed polycyclic aromatic hydrocarbons by Pleurotus sp.
Florida in solid wheat straw substrate, Appl. Microbiol. Biotechnol. 48
(1997) 398404.
[40] S. Yoshida, A. Chatani, Y. Honda, T. Watanabe, M. Kuwahara, Reaction
of manganese-dependent peroxidase from Bjerkandera adusta in aqueous
organic media, J. Mol. Catal. B Enzymatic 9 (2000) 173182.