Boron-containing organic pigments from a Jurassic
red alga
Klaus Wolkensteina,1, Jürgen H. Grossb, and Heinz Falkc
a
Institute of Analytical Chemistry, Johannes Kepler University Linz, 4040 Linz, Austria; bInstitute of Organic Chemistry, University of Heidelberg, 69120
Heidelberg, Germany; and cInstitute of Organic Chemistry, Johannes Kepler University Linz, 4040 Linz, Austria
Edited by Victoria J. Orphan, California Institute of Technology, Pasadena, CA, and accepted by the Editorial Board September 23, 2010 (received for review
June 10, 2010)
Organic biomolecules that have retained their basic chemical
structures over geological periods (molecular fossils) occur in a wide
range of geological samples and provide valuable paleobiological,
paleoenvironmental, and geochemical information not attainable
from other sources. In rare cases, such compounds are even
preserved with their specific functional groups and still occur within
the organisms that produced them, providing direct information on
the biochemical inventory of extinct organisms and their possible
evolutionary relationships. Here we report the discovery of an
exceptional group of boron-containing compounds, the borolithochromes, causing the distinct pink coloration of well-preserved
specimens of the Jurassic red alga Solenopora jurassica. The borolithochromes are characterized as complicated spiroborates (boric
acid esters) with two phenolic moieties as boron ligands, representing a unique class of fossil organic pigments. The chiroptical properties of the pigments unequivocally demonstrate a biogenic origin,
at least of their ligands. However, although the borolithochromes
originated from a fossil red alga, no analogy with hitherto known
present-day red algal pigments was found. The occurrence of the
borolithochromes or their possible diagenetic products in the fossil
record may provide additional information on the classification and
phylogeny of fossil calcareous algae.
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fossil red algae molecular preservation phenolic boric acid esters
activity liquid chromatography–mass spectrometry
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he striking pink coloration of specimens of the fossil calcareous red alga Solenopora jurassica has been a matter of debate for decades and is well known from the Jurassic of Great
Britain (“Beetroot Stone”) (1–3) and France (4). Solenopora
specimens at the reported localities are well preserved and exhibit preserved tissue structures and regular alternating bands
(2–4) that have been interpreted as seasonal growth structures
(3). The characteristic coloration associated with these bands is
generally more intense in the inner portions of the algal nodules
(2, 3). Given that no traces of the pigments can be found in the
surrounding sediment, consisting of white oolitic limestones at
both locations, there can be no doubt that the pigments are of
endogenous origin. Previous reports speculated that the pigments from the Beetroot Stone likely are porphyrins (2), generally known from bituminous sediments and petroleum (5),
whereas the coloration of specimens from France has been attributed to fossil hypericinoid pigments (fringelites) (6), polycyclic quinones described from purple-colored fossil crinoids
(7, 8). Here we provide evidence that the pink coloration of S.
jurassica from both occurrences is in fact due to the presence of
a unique class of complicated boron-containing organic pigments, which we name borolithochromes.
Results and Discussion
We analyzed distinctly pink-colored S. jurassica specimens (Fig.
1A) from two of the localities reported in the literature, including a part of the neotype from the Beetroot Stone. Following
dissolution of the carbonate matrix with HCl, crude extracts
were obtained by extraction of the residues with dimethyl sulf19374–19378 | PNAS | November 9, 2010 | vol. 107 | no. 45
oxide (DMSO). The reddish-colored extracts were purified by
solid-phase extraction and characterized by HPLC–diode array
detection–electrospray ionization–mass spectrometry (HPLCDAD-ESI-MS). From a large Solenopora sample (102.5 g) from
France, 1.1 mg of crude pigment isolate was obtained as an intensely crimson-colored organic residue (Fig. S1). HPLC analysis
of the pigments revealed numerous compounds with similar UVvisible spectra, with the prominent group at retention time of
8.0–10.0 min showing a major broad absorption band at 520 nm
and a minor one at 420 nm (Fig. 1B), but no Soret band at ~400
nm (which is characteristic of porphyrins). In the negative-ion
mass spectra, corresponding ions at mass-to-charge ratios (m/z)
of 839, 853, and 867 were detected, indicating that the pigments
consist of a homologous series of compounds and accompanying isomers (Fig. 1C). Moreover, all compounds exhibited a
characteristic isotope pattern indicative of the presence of a single boron atom (Fig. 1D). Based on accurate mass data obtained
by HPLC-MS and additional measurements using Fourier
transform ion cyclotron resonance mass spectrometry (FT-ICRMS) for the ions at m/z 839, 853, and 867, the molecular
formulae C50H36O12B, C51H38O12B, and C52H40O12B were determined (Fig. 1D and Fig. S2).
The boron could be readily removed from the borolithochromes
by reacting the pigments in methanol containing 0.1% trifluoroacetic acid. Several series of homologous pigments were
isolated by HPLC for further analysis. Solvolysis (methanolysis/
hydrolysis) of a fraction containing various isomers of the pigments
[C50H36O12B]−, [C51H38O12B]−, and [C52H40O12B]− ([M]−) (Fig.
2A) resulted in the formation of only two HPLC peaks (Fig. 2B)
with ions at m/z 415 and 429 ([M–H]−), which could be assigned
to C25H19O6 and C26H21O6 (Fig. 2C). Accordingly, solvolysis of
a fraction containing isomers of the pigments [C48H32O8B]−,
[C49H34O8B]−, and [C50H36O8B]− resulted in the formation of
two HPLC peaks with ions at m/z 369 and 383 ([M–H]−), which
could be assigned to C24H17O4 and C25H19O4 (Fig. S3 A–C).
Obviously, two equivalent homologous ligands with different
substitution patterns give rise to the combinatorial multitude of
homologous and isomeric borolithochromes. All solvolysis
products revealed UV-visible spectra similar to the boroncontaining precursors (Fig. 2B, Inset) with a distinct bathochromic shift of the long-wavelength absorption. Furthermore,
all borolithochromes and all solvolysis products exhibited deuterium-exchangeable protons, indicating the presence of multiple
hydroxy groups (Fig. S4). For the homologous borolithochromes
[C50H36O12B]− to [C52H40O12B]− ([M]−), six H/D exchanges
Author contributions: K.W. designed research; K.W. and J.H.G. performed research; K.W.
collected fossil material; J.H.G. contributed new reagents/analytic tools; K.W., J.H.G., and
H.F. analyzed data; and K.W. and H.F. wrote the paper.
The authors declare no conflict of interest.
This article is a PNAS Direct Submission. V.J.O. is a guest editor invited by the Editorial
Board.
1
To whom correspondence should be addressed. E-mail:
[email protected].
This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.
1073/pnas.1007973107/-/DCSupplemental.
www.pnas.org/cgi/doi/10.1073/pnas.1007973107
C
A
Abs. (mAU)
DAD1 - C:Sig=520,4 161209_004.d
4
2
1
x10
6
Intensity
520 nm
3
5
-
Scan Frag=200.0V 161209_004.d
m/z 839.23
m/z 853.25
m/z 867.26
5
4
3
2
1
6
7
8
9
10
11
12
Retention time (min)
B
D
x104
3
2
-ESI Scan (8.585-8.750 min, 11 scans) Frag=200.0V 161209_004.d Subtract
839.2306
839.2306
6
7
[C50H36O12B]-
5
6
4
3
2
Intensity
4
Absorbance (mAU)
1
0
300
400
500
Wavelength (nm)
600
5
4
840.2334
2
1
840.2334
3
838.2327
839.23044
841.2356
838.2327
1
841.2356
842.2382
6
8
10
12
14
16
18
Retention time (min)
838
839
840
841
842
843
844
m/z
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Fig. 1. Specimen of the Jurassic red alga S. jurassica with exceptional preservation of fossil boron-containing organic pigments (borolithochromes) and
analytical data of extracted pigments (DMSO extract). (A) Polished slab of S. jurassica (MNHN 40091), Upper Jurassic, Tannay, France. (B) HPLC chromatogram
(detection at 520 nm) of extracted fossil pigments (MNHN 23874) and UV-visible spectrum of the first peak in the chromatogram (Inset). (C) Section from the
HPLC chromatogram shown in B (Upper) and extracted ion chromatograms (negative-ion ESI-MS) (Lower) of fossil pigments. (D) Mass spectrum of the main
single isomeric pigment showing the characteristic isotope pattern of boron, observed m/z 839.2306 [M]−, calculated for C50H36O1211B: 839.2305). Note the
difference of 0.9979 Da (calculated for 11B − 10B: 0.9964) between m/z 838 and 839 and the difference of 1.0028 Da (calculated for 13C − 12C: 1.0034) between
m/z 839 and 840.
were observed, compared with two H/D exchanges for homologs
[C48H32O8B]− to [C50H36O8B]− ([M]−), suggesting a difference
of four hydroxy groups between the two series (Fig. S4 A and B).
The distinct hypsochromic shift of 15 nm observed in the UVvisible spectra of the two series indicates that the hydroxy groups
are phenolic (Fig. S5). Accordingly, the corresponding products
C25H19O6 and C24H17O4 ([M–H]−) (and their homologs) showed
four and two H/D exchanges, respectively (Fig. S4 C and D),
suggesting a difference of two hydroxy groups between the
products. These data strongly imply that the borolithochromes
are boric acid esters with two phenolic moieties as boron ligands,
representing a unique class of spiroborate pigments (Fig. 3). This
was also confirmed by 11B NMR spectroscopy of a crude DMSOd6 extract, which displayed a single peak at 2.7 ppm (Fig. S6)
characteristic of borates (9). Moreover, the tetrahedral coordination of the spiroborates is expressed by their chiroptical
properties, as revealed by circular dichroism (CD) spectroscopy
of individual pigments (Fig. 4). Whereas the single isomeric
[C50H36O12B]− is chiroptically inactive, the CD spectra of the
chromatographically resolvable isomers of [C51H38O12B]− and
[C52H40O12B]− are opposite in sign, indicating that the latter
compounds are diastereomers (due to a chiral center in addition
to their inherent C2 symmetry; SI Text) (10). Because MS data
suggest that the borolithochromes are negatively charged from
Wolkenstein et al.
the borate but the solvolysis products form [M–H]− ions, based
on the number of H/D exchanges, a quinoid structure can be
excluded. Characteristic fragmentation patterns were obtained
by collision-induced dissociation of the ions at m/z 415 and 429
by means of ESI tandem MS (Fig. 2D). Compounds demonstrated elimination of CH4 and C2H6, indicating the presence of
alkyl side chains, followed by elimination of CH2CO and CO2.
Fragmentation of the ions at m/z 369 and 383 also led to the
elimination of CH4 and C2H6 (Fig. S3D), however, followed by
elimination of CHO, C2H2, and CO, consistent with a phenolic
structure. Based on the molecular formulae of the solvolysis
products, all of which require 16 degrees of unsaturation, as well
as the lack of significant fragments below m/z 200, it can be
concluded that the basic structure of the borolithochrome ligands
is a highly condensed aromatic system. The extremely complex
composition of organic matter in the samples from Great Britain
and France (SI Text, Fig. S7, and Table S1) with very low concentrations of individual compounds, along with the limited
availability of fossil specimens with distinct coloration, excluded
a detailed structural elucidation of the fossil pigments by means of
1
H-, 13C-, and 2D NMR.
The borolithochromes represent a previously unknown class of
organic pigments, fossil as well as recent, and are exceptional in
containing the element boron. Because the borolithochromes are
PNAS | November 9, 2010 | vol. 107 | no. 45 | 19375
EVOLUTION
842.2382
0
837
CHEMISTRY
Absorbance at 520 nm (mAU)
DAD1 - C:Sig=520,4 161209_004.d
C
x104
8
DAD1 - C:Sig=520,4 200110_002.d
2
-
[C50H36O12B]
[C51H38O12B]
415.1191
415.1191
[M-H]-
Peak 1
C25H19O6
4
-
1
-ESI Scan (1.664-1.796 min, 9 scans) Frag=200.0V 200110_003.d Subtract
6
Intensity
Absorbance at 520 nm (mAU)
A
[C52H40O12B]
416.1224
2
0
x104
8
416.1224
417.1251
417.1251
-ESI Scan
-
scans) Frag=200.0V 200110_003.d Subtract
429.1351
429.1351
[M-H]-
Peak 2
6
C26H21O6
4
0
430.1381
430.1381
2
431.1410
430
431.1410
0
0
6
4
2
8
10
12
410
415
420
425
430
B
D
- C:Sig=520,4 200110_003.d
2
1
Peak 1
4
-ESI Product Ion (1.692-1.810 min, 3 scans)
[email protected] (415.1200[z=1] -> **) 200110_004.d
399.0870
Peak 1
6
3
4
2
399.09
-CH2CH2
-CO2
-CH2O
-CH2CO
-CH4
355.10
327.07
357.08
340.07
381.08
355.0975
Intensity
2
1
x103
8
5
Absorbance (mAU)
Absorbance at 520 nm (mAU)
435
m/z
Retention time (min)
1
0
300
400
500
Wavelength (nm)
600
2
327.0675
283.0733
0
x104
1
415.11
340.0739
372.0721 381.0773
299.0690
415.1147
-ESI Product Ion (2.231-2.332 min, 3 scans)
[email protected] (429.1300[z=1] -> **) 200110_004.d
399.0861
399.09
Peak 2
-C2H6
0
355.10
327.07
357.08
340.07
381.07
357.0761
327.0663
300.0785
312.0767
429.13
340.0722
372.0642 381.0735
413.0989
429.1345
0
0
2
4
6
8
10
12
Retention time (min)
250
275
300
325
350
375
400
425
m/z
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Fig. 2. Solvolysis of borolithochromes and formation of free phenolic compounds. (A) HPLC chromatogram (detection at 520 nm) of a HPLC fraction containing only isomers of the pigments [C50H36O12B]−, [C51H38O12B]−, and [C52H40O12B]− ([M]− at m/z 839, 853, and 867) analyzed immediately after dissolution
in methanol containing 0.1% trifluoroacetic acid. (B) HPLC chromatogram of the same solution after storage for 30 min at 50 °C with reaction products (peaks
1 and 2) and UV-visible spectrum of peak 1 (Inset). (C) Mass spectra of the products shown in B (peak 1: observed m/z 415.1191 [M–H]−, calculated for
C25H19O6: 415.1187; peak 2: observed m/z 429.1351 [M–H]−, calculated for C26H21O6: 429.1344). (D) Collision-induced dissociation mass spectra of m/z 415.12
and 429.13 shown in C (peaks 1 and 2).
found only within pink-colored specimens of Solenopora, and
specific chirality as observed in the pigments is a characteristic
signature of life, the borolithochrome subchromophores are of
unequivocal biological origin. However, two hypotheses could
conceivably account for the presence of boron in the pigments:
(i) Although present-day natural compounds containing boron
are rare (11, 12), the fossil pigments might represent original boron-containing natural products, and (ii) boron might have been
introduced during diagenesis. Because of the thermodynamic situation of phenolic spiroborates (13, 14), the diagenetic formation
of these spiroborates from unboronated precursor compounds
would be rather unlikely. This is consistent with the low boron
content of the surrounding limestone (4.5–15.7 ppm), which is
within the lower range of other marine carbonates (15), as well as
the lack of intermediate single ligand esters in the fossils. It also
should be noted that no diagenetic complexation process with
boron has been reported in the literature. However, although the
present data point to the preservation of primary boron-containing
pigments, the latter hypothesis cannot be fully excluded, because
diagenetic complexation processes (involving predominately
transition metals) are well known for porphyrins (5).
Most fossil organic compounds, particularly those of preCenozoic age, lost their original functional groups during diagenesis, retaining only their basic chemical structures (5). The
exceptional preservation of the highly functionalized borolithochromes might be explained by rapid burial of the algae in
19376 | www.pnas.org/cgi/doi/10.1073/pnas.1007973107
a high-energy depositional environment (Materials and Methods)
and by the occurrence of the pigments within a calcium carbonate matrix. The pigments can be extracted only with organic
solvents after dissolution of the carbonate matrix by either the
use of a strong acid (HCl or HF) or calcium complexation
(EDTA). Because salt formation with divalent ions, such as Ca2+,
is believed to be a key factor in the preservation of fossil
hypericinoid pigments (due to the strong acidity of specific hydroxy groups) (8, 16), the extraordinary stability of the borolithochromes might be due to salt formation of the negatively
charged borates with Ca2+ from the calcitic Solenopora material.
The occurrence of borolithochromes in Middle and Upper
Jurassic specimens of Solenopora from different localities in
Europe suggests that these compounds were common in solenoporacean algae, a family with a fossil record from the early
Paleozoic to the Miocene generally assigned to the Rhodophyta.
Even though Solenoporaceae are currently considered a heterogenous group and appear to include chaetetid sponges and
receptaculids in addition to red algae (17, 18), S. jurassica and
similar fossils from the Jurassic most likely are red algae, given
the presence of typical features of coralline algae (e.g., filaments
with well-developed cross partitions) (2, 18). Although no indications of the presence of phycoerythrin, the present-day red
algal light-harvesting pigment (19), or its possible degradation
products were found in S. jurassica, and no boron-containing
phenolic pigments are hitherto known from recent organisms,
Wolkenstein et al.
other phenolic pigments within the red algae are represented by
the floridorubin pigments (20, 21). The presence of the borolithochromes in S. jurassica neither supports nor call into
question the status of this species and related forms as red algae,
but offers the possibility of clarifying their assignment if similar
pigments were to be found in recent organisms. In any case, the
specific fossil pigments are of potential value as biomarkers for
a coherent group of organisms. It would be rather unlikely for
such stereochemically complicated and highly unusual pigments
to have evolved independently in different groups of organisms,
such as red algae and sponges. Furthermore, horizontal gene
transfers, which might account for the occurrence of similar
secondary metabolites in phylogenetically distant organisms,
have been documented between eukaryotes only rarely. Thus,
the occurrence of the borolithochromes or their possible diagenetic products in the fossil record may have implications for the
phylogenetic status of individual taxa and may provide additional
information on the relationship between coralline red algae with
their Mesozoic and Paleozoic ancestors.
Materials and Methods
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Fossil Material and Geological Setting. Specimens of S. jurassica with distinct
pink coloration from two localities reported in the literature were selected
from collection material or were collected at the original localities (2, 4): (i)
two pink-colored specimens (MNHN 21556 and MNHN 23874; Muséum National d’Histoire Naturelle Paris) from Les Petites-Armoises (Département
Ardennes, France) and one intensely pink-colored specimen (MNHN 40091)
from Tannay (~2 km northeast of the locality near Les Petites-Armoises),
Upper Jurassic, Oxfordian, and (ii) two pink-colored specimens (BMNH
V.60741, representing a part of the neotype, and NHMUK PAL PB V 67825;
Natural History Museum London) from Foss Cross Quarry near Chedworth
(Gloucestershire, Great Britain), Middle Jurassic, Bathonian, White Limestone Formation, Beetroot Stone.
The investigated specimens of S. jurassica from both localities came from
oolitic limestones deposited in shallow marine environments. At the French
location, Solenopora specimens are found in proximity to coral reefs (4),
whereas the Solenopora-bearing Beetroot Stone in Great Britain has no
close reefal association (2). The disturbed orientation of the majority of algal
masses suggests that benthic organisms were disrupted and rapidly buried
under high-energy conditions (2).
Extraction and Isolation of Pigments. Fragments of pink-colored Solenopora
material (8.2–31.1 g) were cleaned with acetone. After dissolution of the
carbonate with 10 M HCl, the residues were separated by centrifugation,
washed thoroughly with distilled water, and dried overnight at room temperature under vacuum (~10 Torr). Residues were then sequentially extracted by sonication (10 min at 40 °C) and centrifugation in toluene (3×),
tetrahydrofuran (3×), and DMSO (1×). Toluene extracts contained no pigments and were not analyzed in detail. The reddish-colored tetrahydrofuran
and DMSO extracts were cleaned up by solid-phase extraction. The sorbent
(Bondesil C18, 40 μm) was conditioned by washing with acetonitrile. The
extracts then were loaded onto the column, and compounds were eluted
with acetonitrile. Analysis of tetrahydrofuran and DMSO extracts showed
that both extracts contained the same pigments.
Isolation of pigments was done using a 102.5-g sample from of a large
specimen (MNHN 23874) from S. jurassica with distinct coloration from Les
Petites-Armoises. The material was treated with 10 M HCl and extracted
sequentially as described above, but using only toluene and successive
portions of DMSO. The dark, reddish-brown DMSO extract was further purified using a modified solid-phase extraction method. The sorbent (Bondesil
C18, 40 μm) was conditioned by washing with acetonitrile, followed by
acetonitrile/20 mM aqueous ammonium acetate (50:50). The DMSO extract
then was loaded onto the column, and the sorbent was washed with acetonitrile/20 mM aqueous ammonium acetate (50:50) to remove organic
15
10
5
0
-5
-10
-15
-20
-25
250
300
350
400
450
500
550
600
Wavelength (nm)
Fig. 4. CD spectra of borolithochrome racemate and diastereomers in
DMSO [(M)-C50H36O12B + (P)-C50H36O12B], [M]− at m/z 839 (red solid line; first
peak in Fig. 1C), (M,R)-C51H38O12B [with an arbitrarily assigned configuration
(R) of one of the ligands], [M]− at m/z 853 (blue dashed line; second peak in
Fig. 1C), (P,R)-C51H38O12B, [M]− at m/z 853 (blue solid line; third peak in Fig.
1C), (M,R)-C52H40O12B, [M]− at m/z 867 (magenta dashed line; fourth peak in
Fig. 1C), and (P,R)-C52H40O12B, [M]− at m/z 867 (magenta solid line; fifth peak
in Fig. 1C).
matrix compounds (brown-colored fraction) and then with water. The pinkcolored compounds were eluted with acetonitrile, and the solvent was removed under vacuum, leaving an intensely crimson-colored residue (1.1 mg).
Several borolithochrome fractions were obtained by semipreparative HPLC
on a Phenomenex Gemini C18 column (150 × 4.6 mm i.d., 5 μm) at 30 °C. The
HPLC program consisted of a linear gradient of acetonitrile/20 mM aqueous
ammonium acetate (60:40) to 100% acetonitrile in 15 min, followed by
isocratic elution at 100% acetonitrile at a flow rate of 1.0 mL min−1. Finally,
individual borolithochromes were isolated using a Phenomenex Gemini C18
column (250 × 4.6 mm i.d., 5 μm) at 30 °C. The HPLC program consisted of
a linear gradient of acetonitrile/20 mM aqueous ammonium acetate (65:35)
to 85% acetonitrile in 40 min, followed by a linear gradient to 100% acetonitrile in 2 min and isocratic elution at 100% acetonitrile at a flow rate
of 1.0 mL min−1.
HPLC-MS Analysis. HPLC-MS measurements were carried out using an Agilent
1100 Series HPLC system with a diode array detector coupled to an Agilent
6520 Q-TOF LC/MS mass spectrometer equipped with an ESI source. Separation was performed at 30 °C on an Agilent Zorbax Eclipse XDB-C18 column
(50 × 4.6 mm i.d., 1.8 μm). The HPLC program consisted of a linear gradient
of acetonitrile/20 mM aqueous ammonium acetate (50:50) to 100% acetonitrile in 20 min, followed by isocratic elution at 100% acetonitrile at a flow
rate of 1 mL min−1. The DAD wavelength was 520 nm, and UV-visible spectra
of each peak were recorded in the 200- to 800-nm wavelength range.
Extracts were filtered before injection using 0.2-μm polytetrafluoroethylene
filters (ReZist; Schleicher & Schuell). Mass spectra were acquired in the
negative-ion mode (nebulizer gas pressure, 60 psi; drying gas flow, 12 L min−1;
drying gas temperature, 350 °C; capillary voltage, 4.0 kV) over an m/z range
of 100–1,300. Mass calibration was obtained using purine and the HP-0921
acetate adduct (C20H21O8N3P3F24) introduced via a reference sprayer. For
tandem MS experiments, precursor ions measured at defined retention
times during the HPLC run were mass-selected in the quadrupole and
fragmented in the collision cell operated at various collision offset voltages.
Borolithochromes were fragmented at 80, 120, and 160 V, and the solvolysis
products were fragmented at 55 V (m/z 415.12 and 429.13) and 70 V (m/z
369.11 and 383.13).
FT-ICR-MS. Molecular formulae of the pigments were determined by FT-ICRMS on a Bruker ApexQe instrument equipped with an ESI source and a 9.4-T
superconducting magnet. All spectra were obtained in the negative-ion
mode. DMSO extracts were diluted depending on their initial concentration
from 1:10 to 1:30 in acetonitrile/water 3:1 (vol/vol) plus 0.1 M ammonia and
were delivered to the ESI interface via a syringe pump at 3–6 μL min−1. The
solutions were sprayed at 4.5 kV with a nebulizer gas flow of 1.0 L min−1 and
a desolvation gas flow of 2.0 L min−1 at 200–220 °C. Depending on the
sample concentration and the type of experiment, the ions were accumulated in the collision hexapole for 1.0–4.0 s and then transferred into the ICR
PNAS | November 9, 2010 | vol. 107 | no. 45 | 19377
EVOLUTION
Fig. 3. Structure of the main single isomeric borolithochrome (C50H36O12B,
[M]− at m/z 839).
Wolkenstein et al.
20
O
З (Lmol-1cm-1)
O
3
CHEMISTRY
C25H15O OH
B
3
25
O
O
C25H15O OH
cell. The mass spectra were acquired in the broadband mode over an m/z
range of 250–1,500 with 2 mega data points. Typically, 32 transients were
accumulated for one magnitude spectrum. External mass calibration was
performed with a solution of arginine [0.2 mg mL−1 in methanol/water 1:1
(vol/vol)] using [arginine–H]− cluster ions. The same solution was added to
the analyte solution to establish internal mass calibration. Generally, a mass
accuracy of 1 ppm was achieved.
Solvolysis of Borolithochromes. Isolated pigments were dissolved in methanol
(0.02% H2O, according to Karl Fischer titration) containing 0.1% trifluoroacetic acid (vol/vol). The solution was stored at 50 °C for 30 min, and the
reaction was monitored by HPLC-DAD-ESI-MS under the same conditions
described above.
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H/D Exchange Experiments and MS Analysis. For H/D exchange experiments,
DMSO extracts and isolated fractions dissolved in DMSO were diluted either
3:7 in acetonitrile/H2O 6:1 (vol/vol) or 3:7 in acetonitrile/D2O 6:1 (vol/vol)
and delivered to the ESI interface (Agilent 6520 Q-TOF LC/MS mass spectrometer) via a syringe pump at 25 μL min−1. Mass spectra were acquired
in the negative-ion mode (nebulizer gas pressure, 20 psi; drying gas flow,
5 L min−1; drying gas temperature, 325 °C; capillary voltage, 3.5 kV) over an
m/z range of 100–1,300. Mass calibration was obtained using trifluoroacetic
acid and the HP-0921 trifluoroacetic acid adduct (C20H18O8N3P3F27) introduced via a reference sprayer.
11
B NMR chemical shifts were referenced externally to boron trifluoride
etherate. The broad background signal from any boron-containing glasses
used in the probe or in the sample tube was removed during the processing
using Topspin version 2.1 (Bruker). Conversion of the experimental digitalfiltered raw data to analog-filtered data was followed by backward linear
prediction of the first 64 data points using 128 coefficients.
CD Spectroscopy. CD spectra of individual pigments were recorded in DMSO
at 20 °C on a Jasco J-810 spectropolarimeter using 1-mm quartz cuvettetes.
Spectra were obtained by accumulation of 16 scans over the 250- to 600-nm
wavelength range, and then smoothed using a 25-point Savitzky–Golay filter. Concentrations of the sample solutions were in the range of 6.3–11.6
μmol L−1, as determined on a Varian CARY 100 Bio UV-visible spectrophotometer based on the long-wavelength absorption maximum of the crude
pigment isolate in DMSO.
Boron Elemental Analysis of Carbonate. The boron concentration of the oolitic
limestone matrix of a S. jurassica specimen (NHMUK PAL PB V 67825) from Foss
Cross was determined by laser ablation inductively coupled plasma MS. Data
were acquired using a GeoLasC laser ablation system (MicroLas; wavelength
193 nm) and analyzed with a ELAN 6100 DRC quadrupole mass spectrometer
(PerkinElmer). Boron concentrations from single hole measurements of matrix components and cement were in the range of 4.5–15.7 ppm.
11
B NMR. The 11B NMR measurements were done using a part (13.6 g) from
the large specimen (MNHN 23874) from Les Petites-Armoises. After dissolution of the carbonate with 10 M HCl, the organic residue was obtained as
described above. Then the residue was directly extracted with a minimum
volume (0.5 mL) of DMSO-d6. The 11B NMR spectrum (192.54 MHz) was
recorded at 298 K on a Bruker Avance DRX 600 NMR spectrometer using a 5mm inverse triple probe (1H, 13C, broadband) with triple-axis gradient coils.
ACKNOWLEDGMENTS. We thank H. Kählig (University of Vienna) for 11B
NMR measurements, D. Günther (ETH Zurich) for LA-ICP-MS, R. Riding (University of Tennessee) for helpful information on the status of S. jurassica,
and P. Davis (Natural History Museum London), J. Dejax (Muséum National
d’Histoire Naturelle Paris), and A. E. Richter for fossil samples. Discussions
with W. Buchberger (University of Linz) and J. R. Maxwell (University of
Bristol) improved the manuscript. This study was supported by Deutsche
Forschungsgemeinschaft Grant WO 1491/1-1 (to K.W.).
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