Bioconductor KaryoploteR

Showing : karyoploteR • reset

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391

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TxDb.Mmusculus.UCSC.mm10.ensGene TxDb karyoploteR

3 months ago remi-xavier.coux ▴ 10

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735

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GenomicFeatures karyoploteR TxDb.Hsapiens.UCSC.hg19.knownGene

22 months ago Shreyash ▴ 10

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2.0k

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BSgenome.Athaliana.TAIR.TAIR10. karyoploteR BSgenome

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by rtt100 • 0

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1.1k

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KaryoploteR

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by mpigozzi • 0

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3.6k

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karyoploter

updated 5.5 years ago by bernatgel ▴ 150 • written 5.5 years ago by Aditya ▴ 160

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1.3k

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karyoploteR

updated 5.9 years ago by bernatgel ▴ 150 • written 5.9 years ago by saeed Ur Rehman • 0

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2.2k

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software error R bsgenome karyoploter

updated 7.3 years ago by bernatgel ▴ 150 • written 7.3 years ago by kirannbishwa01 ▴ 20

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1.5k

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karyoploter

updated 7.5 years ago by bgel ▴ 10 • written 7.5 years ago by spr ▴ 10

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1.1k

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KaryoploteR

7.6 years ago Radek ▴ 90

9 results • Page 1 of 1

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Comment: orgDB by shepherl 4.1k

You should look at the documentation on the help pages for those packages. It should be clear enough there. But to speed things along: `…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by Harry • 0

It's interesting to see how the normalization factors are all 1, yet the MA plot reflects changes, indicating that the normalization proces…

Comment: European Bioconductor Conference 2023 planning by Andrew • 0

Great information! This is a great opportunity for the computational biology community to connect and grow. @[Chill Guy Clicker][1] [1…

Comment: orgDB by Fatima • 0

how to do that?

Answer: Is it possible to model DNA methylation as a dose response in edgeR? by Gordon Smyth 52k

edgeR works with any linear model, so handles any combination of factors and covariates. If you include dose as a covariate in the linear m…

Votes

A: What is the "linear model" part used for in Limma?

Comment: Use of limma R package with targeted proteomics for DE analysis

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

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Teacher to Aaron Lun ★ 28k