(Q34094294)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

title

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

0 references

0 references

single cell transcriptomics

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Doug Brownfield

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Angela Wu

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

9

Stephen R Quake

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

4

Norma F Neff

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

5

Gary L Mantalas

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

author name string

F Hernan Espinoza

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Tushar J Desai

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Mark A Krasnow

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

language of work or name

English

0 references

publication date

13 April 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

external data available at URL

14 March 2020

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52583

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

volume

509

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

issue

7500

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

page(s)

371-375

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

14 March 2020

single-cell RNA-seq

0 references

lung

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

cites work

Alveolar progenitor and stem cells in lung development, renewal and cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Accounting for technical noise in single-cell RNA-seq experiments.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Radial construction of an arterial wall

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Transcriptional programs controlling perinatal lung maturation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Fast gapped-read alignment with Bowtie 2

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Single-cell dissection of transcriptional heterogeneity in human colon tumors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

AnimalTFDB: a comprehensive animal transcription factor database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Synthetic spike-in standards for RNA-seq experiments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Whole-transcriptome RNAseq analysis from minute amount of total RNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Quality control and preprocessing of metagenomic datasets

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Gene expression profiling and chromatin immunoprecipitation identify DBN1, SETMAR and HIG2 as direct targets of SOX11 in mantle cell lymphoma

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

RNA-Seq analysis to capture the transcriptome landscape of a single cell

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

The Sequence Alignment/Map format and SAMtools

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

mRNA-Seq whole-transcriptome analysis of a single cell

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

TopHat: discovering splice junctions with RNA-Seq

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Molecular staging of epithelial maturation using secretory cell-specific genes as markers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Hop functions downstream of Nkx2.1 and GATA6 to mediate HDAC-dependent negative regulation of pulmonary gene expression

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Identification of bronchioalveolar stem cells in normal lung and lung cancer

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Prediction of gene function by genome-scale expression analysis: prostate cancer-associated genes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Quantitative assessment of single-cell RNA-sequencing methods.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Neuroepithelial body microenvironment is a niche for a distinct subset of Clara-like precursors in the developing airways

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Highly multiplexed and strand-specific single-cell RNA 5' end sequencing

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

The External RNA Controls Consortium: a progress report.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Gene targeting reveals a widespread role for the high-mobility-group transcription factor Sox11 in tissue remodeling

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145853

Freshly isolated rat alveolar type I cells, type II cells, and cultured type II cells have distinct molecular phenotypes

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24739965

12 December 2020

inferred from PubMed ID database lookup

Whole Genome Amplification by T7-Based Linear Amplification of DNA (TLAD): II. Second-Strand Synthesis and In Vitro Transcription

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24739965

12 December 2020

inferred from PubMed ID database lookup

Integrin α6β4 identifies an adult distal lung epithelial population with regenerative potential in mice

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE13173

7 January 2021

inferred from DOI database lookup

Interconversion between intestinal stem cell populations in distinct niches

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE13173

7 January 2021

inferred from DOI database lookup

Cutadapt removes adapter sequences from high-throughput sequencing reads

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE13173

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NATURE13173

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

14 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

PubMed publication ID

24739965

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24739965%20AND%20SRC:MED&resulttype=core&format=json