(Q27311570)

26 June 2017

title

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics (English)

1 reference

classification of neurons

26 June 2017

0 references

classification of cells

0 references

0 references

single cell transcriptomics

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

21

Christof Koch

0 references

Thuc Nghi Nguyen

Thuc Nghi Nguyen

3

0 references

Lucas T. Graybuck

Lucas T Gray

8

0 references

Zizhen Yao

Zizhen Yao

6

0 references

Hongkui Zeng

22

Hongkui Zeng

1 reference

26 June 2017

1

Bosiljka Tasic

1 reference

26 June 2017

11

Darren Bertagnolli

1 reference

26 June 2017

17

Amy Bernard

1 reference

26 June 2017

2

Vilas Menon

1 reference

26 June 2017

20

Michael Hawrylycz

1 reference

26 June 2017

9

Staci A Sorensen

1 reference

26 June 2017

Tae Kyung Kim

4

1 reference

26 June 2017

Tim Jarsky

5

1 reference

26 June 2017

Boaz Levi

7

1 reference

26 June 2017

Tim Dolbeare

10

1 reference

26 June 2017

Jeff Goldy

12

1 reference

26 June 2017

Nadiya Shapovalova

13

1 reference

26 June 2017

Sheana Parry

14

1 reference

26 June 2017

Changkyu Lee

15

1 reference

26 June 2017

Kimberly Smith

16

1 reference

26 June 2017

Linda Madisen

18

1 reference

26 June 2017

Susan M Sunkin

19

1 reference

26 June 2017

language of work or name

English

0 references

publication date

4 January 2016

1 reference

external data available at URL

26 June 2017

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71585

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

26 June 2017

volume

19

1 reference

26 June 2017

issue

2

1 reference

26 June 2017

page(s)

335-346

1 reference

describes a project that uses

26 June 2017

brain

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4985242

inferred from PubMed Central ID database lookup

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Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex

21 March 2017

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21 March 2017

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21 March 2017

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21 March 2017

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The spatial and temporal origin of chandelier cells in mouse neocortex

21 March 2017

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Molecular taxonomy of major neuronal classes in the adult mouse forebrain

21 March 2017

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Flip and Flop: A Cell-Specific Functional Switch in Glutamate-Operated Channels of the CNS

21 March 2017

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Toward a genetic dissection of cortical circuits in the mouse

21 March 2017

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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

21 March 2017

1 reference

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A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function

7 April 2017

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limma powers differential expression analyses for RNA-sequencing and microarray studies

7 April 2017

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An anatomically comprehensive atlas of the adult human brain transcriptome

7 April 2017

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A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

7 April 2017

1 reference

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Neuronal subtype specification in the cerebral cortex

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Cortical fast-spiking parvalbumin interneurons enwrapped in the perineuronal net express the metallopeptidases Adamts8, Adamts15 and Neprilysin

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

The stimulus selectivity and connectivity of layer six principal cells reveals cortical microcircuits underlying visual processing.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Translaminar inhibitory cells recruited by layer 6 corticothalamic neurons suppress visual cortex

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

28 September 2017

1 reference

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A mouse model of higher visual cortical function.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Synaptic and cellular organization of layer 1 of the developing rat somatosensory cortex

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

GENSAT BAC cre-recombinase driver lines to study the functional organization of cerebral cortical and basal ganglia circuits

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Not all that glitters is gold: off-target recombination in the somatostatin-IRES-Cre mouse line labels a subset of fast-spiking interneurons

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Molecular logic of neocortical projection neuron specification, development and diversity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Inducible control of gene expression with destabilized Cre.

28 September 2017

1 reference

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Inhibition of inhibition in visual cortex: the logic of connections between molecularly distinct interneurons

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

New insights into the classification and nomenclature of cortical GABAergic interneurons

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Large-scale cellular-resolution gene profiling in human neocortex reveals species-specific molecular signatures

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Gain control by layer six in cortical circuits of vision

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

A resource of Cre driver lines for genetic targeting of GABAergic neurons in cerebral cortex.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

A transcriptomic atlas of mouse neocortical layers

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Leptin Action on GABAergic Neurons Prevents Obesity and Reduces Inhibitory Tone to POMC Neurons

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Three groups of interneurons account for nearly 100% of neocortical GABAergic neurons

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Analysis and design of RNA sequencing experiments for identifying isoform regulation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Slow GABA transient and receptor desensitization shape synaptic responses evoked by hippocampal neurogliaform cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Immunochemical characterization of inhibitory mouse cortical neurons: three chemically distinct classes of inhibitory cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Synaptic release of GABA by AgRP neurons is required for normal regulation of energy balance

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Multiple distinct subtypes of GABAergic neurons in mouse visual cortex identified by triple immunostaining

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Identification of a population of sleep-active cerebral cortex neurons

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

A manual method for the purification of fluorescently labeled neurons from the mammalian brain

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

High-efficiency FLP and PhiC31 site-specific recombination in mammalian cells.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Cre recombinase-mediated restoration of nigrostriatal dopamine in dopamine-deficient mice reverses hypophagia and bradykinesia

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Correlation maps allow neuronal electrical properties to be predicted from single-cell gene expression profiles in rat neocortex

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Smooth muscle cell expression of extracellular matrix genes after arterial injury

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Tuning of fast-spiking interneuron properties by an activity-dependent transcriptional switch

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Distribution of neurons in functional areas of the mouse cerebral cortex reveals quantitatively different cortical zones

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Accounting for technical noise in single-cell RNA-seq experiments.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Fate-restricted neural progenitors in the mammalian cerebral cortex.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Melanocortin-4 receptors expressed by cholinergic neurons regulate energy balance and glucose homeostasis

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Adeno-associated viral vectors for anterograde axonal tracing with fluorescent proteins in nontransgenic and cre driver mice

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Genomic anatomy of the hippocampus.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Functional characterization of intrinsic cholinergic interneurons in the cortex

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Electrophysiological differences between neurogliaform cells from monkey and rat prefrontal cortex

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Mouse cortical inhibitory neuron type that coexpresses somatostatin and calretinin.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Leptin directly activates SF1 neurons in the VMH, and this action by leptin is required for normal body-weight homeostasis

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Gap-junctional coupling between neurogliaform cells and various interneuron types in the neocortex.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Immunocytochemical localization of nitric oxide synthase-containing neurons in mouse and rabbit visual cortex and co-localization with calcium-binding proteins.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Demonstration of long-range GABAergic connections distributed throughout the mouse neocortex

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Synaptic interactions of late-spiking neocortical neurons in layer 1.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Cortical interneurons: from Cajal to 2001.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

GABAergic cell subtypes and their synaptic connections in rat frontal cortex

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

Morphology and physiology of cortical neurons in layer I.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4985242

NOS-positive local circuit neurons are exclusively axo-dendritic cells both in the neo- and archi-cortex of the rat brain

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26727548

12 December 2020

inferred from PubMed ID database lookup

Physiological subgroups of nonpyramidal cells with specific morphological characteristics in layer II/III of rat frontal cortex

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26727548

12 December 2020

inferred from PubMed ID database lookup

Novel hippocampal interneuronal subtypes identified using transgenic mice that express green fluorescent protein in GABAergic interneurons

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26727548

12 December 2020

inferred from PubMed ID database lookup

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1038/NN.4216

Identifiers

DOI

10.1038/NN.4216

1 reference

Dimensions Publication ID

26 June 2017

1015676613

0 references

OpenCitations bibliographic resource ID

275177

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

275177

1 reference