AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts

RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins

Calculate five major splicing events using rMATS followed by annotation