iCount, protein-RNA interaction analytics
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Dec 14, 2021 - Python
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protein-rna-interactions
Here are 10 public repositories matching this topic...
pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction
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Apr 24, 2024 - Python
Single-sequence protein-RNA complex structure prediction with biological language models
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Aug 23, 2024 - Python
R package for the RNA Centric Annotation System (RCAS)
go reporting bioconductor rna interactive-plots msigdb modification protein-rna-interactions par-clip motif-discovery coverage-distribution cage
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Feb 4, 2024 - R
A tool for predicting lncRNA-protein interaction probability from sequences.
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Apr 23, 2019 - Jupyter Notebook
Official Pytorch implementation of CrossBind: Collaborative Cross-Modal Identification of Protein Nucleic-Acid-Binding Residues.
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May 10, 2024 - Python
An improved method for predicting RNA-interacting residues in a protein
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Dec 22, 2022 - Python
Plot position weight matrices (PWM)
dna rna protein-rna-interactions binding-sites motifs protein-dna-interactions rna-binding-proteins tfbs transcription-factor-binding-site position-weight-matrix
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Dec 13, 2024 - Julia
Plot position weight matrices (PWM)
dna rna pwm protein-rna-interactions binding-sites motifs protein-dna-interactions rna-binding-proteins tfbs position-weight-matrix transcription-factor-binding-sites
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Nov 18, 2024 - Julia
Prediction of surface protein expression from mRNA expression using a regression auto-encoder neural network.
torch pytorch autoencoder protein-rna-interactions mrna fine-tuning single-cell-analysis cite-seq autoencoder-neural-network protein-expression regression-model
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Mar 3, 2024 - Python
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