Framework for the rapid modeling glycans and glycoproteins.
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Sep 29, 2023 - Rich Text Format
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glycosylation
Here are 10 public repositories matching this topic...
The Swiss Army knife for carbohydrate structure validation, refinement and analysis
svg validation crystallography refinement york clipper ccp4 carbohydrates cryoem glycosylation ccp-em ccp4i2 snfg
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Dec 13, 2024 - C++
The Python software re-glycosylates protein structures using MD simulation results from the glycoshape database. It takes alphafold protein structures as input and outputs modified structures with glycans added at appropriate sites.
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Feb 16, 2024 - Python
CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid mod…
phosphorylation cwl secondary-structure cwl-workflow post-translational-modification glycosylation lipid-modification sumoylation cell-localization acetylation
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Sep 6, 2020 - Python
Repository which is related to GlyCovid project.
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Jun 8, 2023 - Python
Code and datasets for the publication "Recurrent Neural Network-based Prediction of O-GlcNAcylation Sites in Mammalian Proteins"
machine-learning deep-learning recurrent-neural-networks artificial-intelligence artificial-neural-networks post-translational-modification glycosylation o-glycosylation
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Nov 27, 2023 - Python
This is a Java stand-alone tool for the quantitation of glyco sites. It calculates the proportion of different glyco-PTMs in a protein of interest. It supports data from IP2 (quant compare output files) and MaxQuant.
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Dec 21, 2022 - Java
Code and datasets for the publication "Linear and Neural Network Models for Predicting N-glycosylation in Chinese Hamster Ovary Cells Based on B4GALT Levels"
machine-learning artificial-intelligence artificial-neural-networks post-translational-modification glycosylation n-glycosylation
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Apr 2, 2024 - Jupyter Notebook
The JavaScript widget used to visualize the relationship among them
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Dec 13, 2018 - JavaScript
Repository which is related to GlycanBind project.
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Jun 23, 2023 - Python
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