IsoCor: Isotope Correction for mass spectrometry labeling experiments
Estimation of extracellular fluxes and growth rate
Open source software for parallel labeling, steady state metabolic flux analysis
Kinetic modeling of glucose and acetate metabolisms in E. coli
Metabolomics Standards Initiative Ontology
Integration of isotopic measurements
Perform identifiability analysis in small kinetic models for experimental design using steady state fluxes and concentrations.
Showcase IsoSolve
Simultaneous measurement of absolute metabolite concentration and isotope incorporation by mass spectrometry
Constraint-based metabolic modeling software from the Chandrasekaran Lab
Flux response of Pseudomonas putida to increased levels of metabolic burden
Applying implicit deep learning and convex optimization layers to infer metabolic fluxes from gene expression data
Constellab brick for genome-scale metabolic modelling
Supplementary information of Millard et al. 2022
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