A conda environment for neuroimaging analysis. This environment should work on all operating systems.

Requirements:

• miniconda
• mamba

First install mamba in your base environment:

conda install -c conda-forge mamba

Next clone this repository with:

git clone https://github.com/nhuneke/imagingenv imaging-env

Next create the environment on your machine with:

cd imaging-env
mamba env create --file imaging-env.yml

Active the environment with:

conda activate imaging-env

Deactivate the environment with:

conda deactivate

If you download an updated version of the environment file, you will need to update the environment on your machine. Navigate to this repository and use the following command:

mamba env update --name=imaging-env --file=imaging-env.yml --prune