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@USDA-VS

USDA-VS

USDA-Veterinary Services

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  1. GenoFLU GenoFLU Public

    Influenza data pipeline to automate genotyping assignment

    Python 22 4

  2. vSNP vSNP Public

    vSNP -- validate SNPs

    Python 19 12

  3. vSNP3 vSNP3 Public

    vSNP -- validate SNPs

    Python 7 1

  4. NAHLN_AMR NAHLN_AMR Public

    Python 2 1

  5. fastq_data_set-tb_complex fastq_data_set-tb_complex Public

  6. vcf_test_files vcf_test_files Public

    A small set of VCFs with expected output tables for script testing

Repositories

Showing 10 of 13 repositories
  • vsnp3_test_dataset Public

    Dataset for testing vSNP version 3 installation

    USDA-VS/vsnp3_test_dataset’s past year of commit activity
    0 0 0 0 Updated Dec 6, 2024
  • Flumina Public Forked from flu-crew/Flumina

    A pipeline for the analysis of Illumina sequence data from Influenza viruses

    USDA-VS/Flumina’s past year of commit activity
    R 0 GPL-3.0 1 0 0 Updated Oct 30, 2024
  • GenoFLU Public

    Influenza data pipeline to automate genotyping assignment

    USDA-VS/GenoFLU’s past year of commit activity
    Python 22 GPL-3.0 4 6 0 Updated Oct 29, 2024
  • nvsl_bioinformatic_training Public

    The NVSL Bioinformatics Workshop will feature training on command-line bioinformatic tools, processes, and resources routinely used at NVSL for diagnostic testing.

    USDA-VS/nvsl_bioinformatic_training’s past year of commit activity
    HTML 0 0 0 0 Updated Oct 15, 2024
  • vSNP3 Public

    vSNP -- validate SNPs

    USDA-VS/vSNP3’s past year of commit activity
    Python 7 GPL-3.0 1 3 0 Updated Oct 1, 2024
  • vSNP Public

    vSNP -- validate SNPs

    USDA-VS/vSNP’s past year of commit activity
    Python 19 GPL-3.0 12 3 0 Updated Sep 19, 2024
  • NAHLN_AMR Public
    USDA-VS/NAHLN_AMR’s past year of commit activity
    Python 2 1 0 0 Updated Sep 7, 2022
  • vSNP_reference_options Public

    vSNP supporting files

    USDA-VS/vSNP_reference_options’s past year of commit activity
    0 GPL-3.0 1 0 0 Updated Sep 21, 2021
  • minimum_fastqs Public

    testing files: smallest file size and still complete through vSNP_step1.py

    USDA-VS/minimum_fastqs’s past year of commit activity
    0 0 0 0 Updated Jan 7, 2020
  • vSNP_archive Public

    Archived versions of vSNP

    USDA-VS/vSNP_archive’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jan 7, 2020
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