This is the repository for supplementary materials for the upcoming publication

The data analysis of shotgun metagenomic data from bats fecal samples was so complex that there are 4 different parts of it!
See lab journals and some supplementary files in directories:

• 📁 01_QC_n_tax_id - quality control & taxonomic identification step
• 📁 02_Diff_analysis - microbial community analysis (relative abundance, differential abundance analysis, α & β diversities assessment)
• 📁 03_Metagenomes - assembling metagenomes and analyzing them from quality control to the detailed functional profiling
• 📁 04_Densoviruses - analyzing densoviruses (genome annotation, ANI, phylogenomics)

Pipeline:

Figure 1. Pipeline overview.