Merge pull request #300 from PAHFIT/dev

Merge dev branch
PAHFIT · Nov 1, 2024 · ce18223 · ce18223
2 parents 171c645 + 6f6ead0
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diff --git a/CHANGES.rst b/CHANGES.rst
@@ -12,4 +12,4 @@
 ==================
 
 - IDL versions
-- http://tir.astro.utoledo.edu/jdsmith/research/pahfit.php
+- https://github.com/PAHFIT/pahfit_classic
diff --git a/README.rst b/README.rst
@@ -2,7 +2,7 @@ PAHFIT
 ======
 
 
-``PAHFIT`` is a decomposition model and tool for astronomical infrared spectra, focusing on dust and gas emission features from the interstellar medium (see `Smith, J.D.T., Draine B.T., et al., 2007, ApJ, 656, 770 <http://tir.astro.utoledo.edu/jdsmith/research/pahfit.php>`_).
+``PAHFIT`` is a decomposition model and tool for astronomical infrared spectra, focusing on dust and gas emission features from the interstellar medium (see `Smith, J.D.T., Draine B.T., et al., 2007, ApJ, 656, 770 <https://github.com/PAHFIT/pahfit_classic>`_).
 
 This package provides an updated python implementation of ``PAHFIT``.  While the original versions of ``PAHFIT`` (``v1.x``) were written in IDL and focused mainly on Spitzer/IRS spectroscopic observations, the newer python-based versions (``>=v2.0``) will expand instrument coverage to other existing (e.g., AKARI) and planned (e.g., JWST) facilities, and will offer a more flexible modeling framework suitable for modeling a wider range of astrophysical sources.
 

diff --git a/docs/index.rst b/docs/index.rst
@@ -14,7 +14,7 @@ and a more flexible modeling framework suitable for modeling a wider range
 of astrophysical sources.
 
 For details for the IDL version of PAHFIT see
-`Smith, J.D.T., Draine B.T., et al., 2007, ApJ, 656, 770 <http://tir.astro.utoledo.edu/jdsmith/research/pahfit.php>`_.
+`Smith, J.D.T., Draine B.T., et al., 2007, ApJ, 656, 770 <https://github.com/PAHFIT/pahfit_classic>`_.
 
 This package is potentially an
 `astropy affiliated package <http://www.astropy.org/affiliated/>`_
@@ -77,7 +77,7 @@ contributors who will abide by the `Python Software Foundation Code of Conduct
 `Astropy`_.  The following pages will help you get started with contributing
 fixes, code, or documentation (no git or GitHub experience necessary):
 
-* `How to make a code contribution <https://docs.astropy.org/en/latest/development/workflow/development_workflow.html>`_
+* `How to make a code contribution <https://docs.astropy.org/en/latest/index_dev.html#developer-docs>`_
 
 * `Coding Guidelines <https://docs.astropy.org/en/latest/development/codeguide.html>`_
 
@@ -92,10 +92,6 @@ contributors page on Github
 Reference API
 =============
 
-Base class for PAHFIT
-
-.. automodapi:: pahfit.base
-
 Component models not provided by astropy.models.
 
-.. automodapi:: pahfit.component_models
+.. automodapi:: pahfit.fitters.ap_components
diff --git a/docs/version_description/version_description.rst b/docs/version_description/version_description.rst
@@ -5,7 +5,7 @@ Version Description
 v1.0 - v1.4
 ------------
 
-The original IDL version of PAHFIT can be found in: `http://tir.astro.utoledo.edu/jdsmith/research/pahfit.php <http://tir.astro.utoledo.edu/jdsmith/research/pahfit.php>`_. For more details and background of ``PAHFIT``, see the `background <https://pahfit.readthedocs.io/en/latest/background.html>`_ page.
+The original IDL version of PAHFIT can be found in: `https://github.com/PAHFIT/pahfit_classic <https://github.com/PAHFIT/pahfit_classic>`_. For more details and background of ``PAHFIT``, see the `background <https://pahfit.readthedocs.io/en/latest/background.html>`_ page.
 
 v2.0
 ------------
-Original file line number
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@@ Expand Up / @@ -2,7 +2,7 @@ PAHFIT @@
     ======
-    ``PAHFIT`` is a decomposition model and tool for astronomical infrared spectra, focusing on dust and gas emission features from the interstellar medium (see `Smith, J.D.T., Draine B.T., et al., 2007, ApJ, 656, 770 <http://tir.astro.utoledo.edu/jdsmith/research/pahfit.php>`_).
+    ``PAHFIT`` is a decomposition model and tool for astronomical infrared spectra, focusing on dust and gas emission features from the interstellar medium (see `Smith, J.D.T., Draine B.T., et al., 2007, ApJ, 656, 770 <https://github.com/PAHFIT/pahfit_classic>`_).
     This package provides an updated python implementation of ``PAHFIT``.  While the original versions of ``PAHFIT`` (``v1.x``) were written in IDL and focused mainly on Spitzer/IRS spectroscopic observations, the newer python-based versions (``>=v2.0``) will expand instrument coverage to other existing (e.g., AKARI) and planned (e.g., JWST) facilities, and will offer a more flexible modeling framework suitable for modeling a wider range of astrophysical sources.
@@ Expand Down @@