Wikidata:Property proposal/viability on surface
viability on surface
[edit]Originally proposed at Wikidata:Property proposal/Natural science
Description | time of viability of this biological entity on the surface of a given material |
---|---|
Data type | Item |
Domain | item; preferably strains such as SARS-CoV-2 (Q82069695) but might apply to other items such as HIV (Q15787) |
Allowed values | subclass of material (Q214609) |
Example 1 | SARS-CoV-2 (Q82069695) --> plastic (Q11474) duration (P2047) 3 days |
Example 2 | SARS-CoV-2 (Q82069695) --> steel (Q11427) duration (P2047) 3 days |
Example 3 | SARS-CoV-2 (Q82069695) --> cardboard (Q389782) duration (P2047) 1 day |
Example 4 | SARS-CoV-2 (Q82069695) --> copper (Q753) duration (P2047) 4 hours |
Source | All examples are referenced by [1] |
Planned use | Immediate use for SARS-CoV-2. Long term use for all viruses for which this data is available. |
Expected completeness | always incomplete (Q21873886) |
Motivation
[edit]This is an important information about viruses and other pathogenic entities. It is something that is on Wikipedia (i.e. it is of encyclopedic interest) and I believe we currently do not have any ways of modeling that on Wikidata.
Any suggestions of how to better model it are super welcome. TiagoLubiana (talk) 18:33, 27 March 2020 (UTC)
Discussion
[edit]Notified participants of WikiProject COVID-19
Question I like the idea, but what are the allowed values of this property? subclass of (P279) material (Q214609)? --SilentSpike (talk) 16:44, 3 April 2020 (UTC)
- @SilentSpike: That is a very good question. subclass of (P279) material (Q214609) are for sure inside the allowed values. cardboard (Q389782) is a subclass of (P279) paper (Q11472) that is a subclass of (P279) material (Q16829513) that is a subclass of (P279) material (Q214609), so subclasses of subclasses also count. A similar situation happens for alloy (Q37756). So yes. Unless an exception appears in the future, the values should be subclass of (P279)* material (Q214609). TiagoLubiana (talk) 17:19, 3 April 2020 (UTC)
SupportWith that defined, I think this is a reasonable and valuable proposal. Have updated with the constraint. --SilentSpike (talk) 17:22, 3 April 2020 (UTC)- Retracting my support (for now) based on further comments. I like the idea behind this proposal, but see that it needs some more development. --SilentSpike (talk) 12:30, 9 April 2020 (UTC)
- Comment Besides the surface material, the viability depends on some other parameters, e.g. temperature(s), humidity, surface microstructure, mode of pathogen delivery, or the presence of fluxes (people, water, air etc.). So we might need some structure around potential qualifiers. --Daniel Mietchen (talk) 05:08, 6 April 2020 (UTC)
- Comment I don't think the reference given above is a reliable one for an unqualified statement. --- Jura 00:46, 7 April 2020 (UTC)
- Comment Good comments. I am actually trying to reproduce something that is widely regarded as "knowledge". It is stated even in the SARS-CoV-2 Wikipedia page. I totally agree that it would require qualifiers to achieve an ideal degree of precision. But still, if it is on Wikipedia, shouldn't it be on Wikidata? (It is an actual question). I also used the very same reference as in Wikipedia. If it should not be on Wikipedia, then the solution is removing it from the Wikipedia side instead of adding it here, I guess.TiagoLubiana (talk) 22:28, 8 April 2020 (UTC)
- At Wikidata, the question is in general only what rank to use. Once in a while, we have Wikipedia editors deleting statements or references that don't meet some enwiki standard. As I don't edit enwiki, I'd find it problematic to do the same myself there.
For the above, from the summary I was given, adding qualifiers to indicate that it's a lab experiment, the mode is aerosol (likely not be the most frequent), that the cardboard results were inconsistent (if I recall that correctly). Apparently, some might also note that it's a lab experiment published in journal for clinical studies .. Adding other papers that conclude longer (or shorter) periods could help. --- Jura 11:37, 9 April 2020 (UTC)
- At Wikidata, the question is in general only what rank to use. Once in a while, we have Wikipedia editors deleting statements or references that don't meet some enwiki standard. As I don't edit enwiki, I'd find it problematic to do the same myself there.
- @SilentSpike, Daniel Mietchen, Jura1: Thank you very much for the comments. As qualifiers for the numbers from this article, we could have:
- temperature (P2076) 22 +-1 degrees Celsius
- relative humidity (P5596) 40 %
and perhaps
I was not able to find a qualifier to indicate surface microstructure, mode of delivery, or fluxes. Or the initial viral levels, which influences directly the time of detectability. I see that they would be important. On the other hand, the article has been cited a few hundred times, and its results are reported frequently without even the basic constraints of temperature and air humidity. An option to address these limitations would be to create a new qualifer similar to valid in place (P3005) and valid in period (P1264) in the likes of valid for experiment described in, and then the item for reference article. This is conceptually different of a reference, as it is not the source of a statement, but a qualification of scope. What do you think? TiagoLubiana (talk) 02:23, 25 April 2020 (UTC)
- Is "viability" well defined? My instinct would be that the half-life is better defined. ChristianKl ❪✉❫ 17:17, 18 May 2020 (UTC)
- @ChristianKl: Viability seems to be used in this context both in the scientific literature and on Wikipedia. But I agree, viability is a rather loose concept, and half life would be much better. TiagoLubiana (talk) 00:09, 3 June 2020 (UTC)
- How comparable are the standards for viability over multiple different papers? ChristianKl ❪✉❫ 00:11, 3 June 2020 (UTC)
- @ChristianKl: This is a hard question, and would require a systematic review. Usually they just report like "the virus survives for n hours" (ex: [2] [3] [4]. These reports are widely cited, both in the cientific as well as in the popular media [5] and Wikipedia [6]. In Wikidata, we can at least register an expression of concern of the preciseness of such reporting. Would changing the name to "reported survival time on surface" help? Again, I agree this is not precise, but as the sources apparently do not care about that, it is hard for Wikidata to change this (at least now). TiagoLubiana (talk) 13:06, 5 June 2020 (UTC)
- Comment: As others have indicated, these values are not standardized, and would need loads of qualifiers, I think too many to be worth including. Although I admit I'm not well versed in virology or microbiology. Is viability on surfaces a widely used metric across viruses that would be worth including, or are they properties that only apply to a single organism in a single study, with all of its inherent caveats? A value without context is meaningless. I'm leaning more towards oppose than support. Information like this may have use in raw databases for research purposes, but I think not so much in a structured database. -Animalparty (talk) 03:34, 23 September 2020 (UTC)
- Comment Aerosol transmission of SARS-CoV-2? Evidence, prevention and control (Q98615178) has some interesting data. --- Jura 13:14, 30 September 2020 (UTC)
- Comment I agree with all comments. We should avoid pretending we have this kind of knowledge on other Wikimedia projects too, e.g. in Wikipedia. It is an elaborate misconception even shared by scientists and the media. Not a conspiracy, it is just easy to overlook the complexity. Thank you for the discussion. Can this discussion be archived somewhere? Valuable points were shared. --TiagoLubiana (talk) 16:36, 8 November 2020 (UTC)
- @Jura1, Daniel Mietchen, TiagoLubiana, Animalparty: I marked the proposal as not done, given that it's open for a while without support and TiagoLubiana request to archive it. ChristianKl ❪✉❫ 18:01, 8 November 2020 (UTC)
- "withdrawn" in that case. Anyways, I still think this is needed. --- Jura 18:04, 8 November 2020 (UTC)
- @Jura1: I totally agree TiagoLubiana (talk) 19:33, 8 November 2020 (UTC)