Whole genome SNPs discovery in Nero Siciliano pig (Q92684495)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31188930%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

title

Whole genome SNPs discovery in Nero Siciliano pig (English)

1 reference

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1 May 2020

main subject

whole genome sequencing

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1

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1 May 2020

Domenico Giosa

2

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1 May 2020

Letterio Giuffrè

4

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1 May 2020

Orazio Romeo

6

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1 May 2020

Alessandro Zumbo

7

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1 May 2020

author name string

Irene Sapienza

3

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1 May 2020

Riccardo Aiese Cigliano

5

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1 May 2020

publication date

1 July 2019

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Genetics and Molecular Biology

1 May 2020

published in

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1 May 2020

volume

42

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1 May 2020

issue

3

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1 May 2020

page(s)

594-602

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ESTIMATION OF THE EXTENT OF LINKAGE DISEQUILIBRIUM IN SEVEN REGIONS OF THE PORCINE GENOME.

1 May 2020

cites work

1 reference

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Next generation semiconductor based sequencing of bitter taste receptor genes in different pig populations and association analysis using a selective DNA pool-seq approach

11 February 2021

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A decade of pig genome sequencing: a window on pig domestication and evolution

11 February 2021

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Analysis of polymorphisms in the FUT1 and TAP1 genes and their influence on immune performance in Pudong White pigs.

11 February 2021

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Identification of Low-Confidence Regions in the Pig Reference Genome (Sscrofa10.2).

11 February 2021

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data

11 February 2021

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Resequencing diverse Chinese indigenous breeds to enrich the map of genomic variations in swine

11 February 2021

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Transposon Insertions, Structural Variations, and SNPs Contribute to the Evolution of the Melon Genome.

11 February 2021

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Whole-genome resequencing analyses of five pig breeds, including Korean wild and native, and three European origin breeds

11 February 2021

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Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds

11 February 2021

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Genomic analysis reveals selection for Asian genes in European pigs following human-mediated introgression

11 February 2021

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Trimmomatic: a flexible trimmer for Illumina sequence data

11 February 2021

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Signatures of diversifying selection in European pig breeds.

11 February 2021

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Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs

11 February 2021

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Strong signatures of selection in the domestic pig genome

11 February 2021

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Farm-by-farm analysis of microsatellite, mtDNA and SNP genotype data reveals inbreeding and crossbreeding as threats to the survival of a native Spanish pig breed

11 February 2021

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T-bet(+) Treg cells undergo abortive Th1 cell differentiation due to impaired expression of IL-12 receptor β2

11 February 2021

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European pig genetic diversity: a minireview

11 February 2021

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Using Drosophila melanogaster as a Model for Genotoxic Chemical Mutational Studies with a New Program, SnpSift

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

Study on the age-dependent tissue expression of FUT1 gene in porcine and its relationship to E. coli F18 receptor

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

Molecular characterization and genetic structure of the Nero Siciliano pig breed

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

Quantitative trait loci analysis for leg weakness-related traits in a Duroc × Pietrain crossbred population

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

Multifunctional Receptor Stabilin-1 in Homeostasis and Disease

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

Genetic heterogeneity and selection signature at the KIT gene in pigs showing different coat colours and patterns

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

11 February 2021

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

The adipokine zinc-α2-glycoprotein (ZAG) is downregulated with fat mass expansion in obesity

11 February 2021

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The Sequence Alignment/Map format and SAMtools

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

Fast and accurate short read alignment with Burrows-Wheeler transform

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

A genome scan for quantitative trait loci affecting three ear traits in a White Duroc x Chinese Erhualian resource population

11 February 2021

1 reference

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Dynamic evolution of bitter taste receptor genes in vertebrates

11 February 2021

1 reference

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FSHB subunit gene is associated with major gene controlling litter size in commercial pig breeds

11 February 2021

1 reference

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Analysis of the MC1R gene in the Nero Siciliano pig breed and usefulness of this locus for breed traceability

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

Prioritization for conservation of northern European cattle breeds based on analysis of microsatellite data.

11 February 2021

1 reference

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Results of a whole-genome quantitative trait locus scan for growth, carcass composition and meat quality in a porcine four-way cross

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

High amino acid variation in the intracellular domain of the pig prolactin receptor (PRLR) and its relation to ovulation rate and piglet survival traits.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

Evolution of bitter taste receptors in humans and apes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

Components of litter size in gilts with different prolactin receptor genotypes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

The porcine gonadotropin-releasing hormone receptor gene (GNRHR): genomic organization, polymorphisms, and association with the number of corpora lutea

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

A DNA polymorphism influencing alpha(1,2)fucosyltransferase activity of the pig FUT1 enzyme determines susceptibility of small intestinal epithelium to Escherichia coli F18 adhesion.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

Investigation of the retinol-binding protein 4 (RBP4) gene as a candidate gene for increased litter size in pigs

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

Two alpha(1,2) fucosyltransferase genes on porcine chromosome 6q11 are closely linked to the blood group inhibitor (S) and Escherichia coli F18 receptor (ECF18R) loci.

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

The estrogen receptor locus is associated with a major gene influencing litter size in pigs

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6905442

10.1590/1678-4685-GMB-2018-0169

11 February 2021

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31188930%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31188930%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

PubMed publication ID

31188930

1 reference