Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (Q92154246)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31341288%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

title

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31341288%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

1 reference

corrigendum / erratum

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

0 references

author

Evan Bolyen

1

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27 April 2020

Jai Ram Rideout

2

1 reference

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27 April 2020

Matthew R Dillon

3

1 reference

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27 April 2020

Nicholas A Bokulich

4

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27 April 2020

Christian C. Abnet

5

1 reference

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27 April 2020

Gabriel Al-Ghalith

6

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27 April 2020

Eric J. Alm

8

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27 April 2020

Manimozhiyan Arumugam

9

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27 April 2020

Francesco Asnicar

10

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27 April 2020

Yang Bai

11

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27 April 2020

Jordan E Bisanz

12

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27 April 2020

Asker Brejnrod

14

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27 April 2020

C. Titus Brown

16

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27 April 2020

Benjamin J Callahan

17

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Andrés Mauricio Caraballo-Rodriguez

27 April 2020

18

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27 April 2020

Ricardo da Silva

21

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27 April 2020

Christian Diener

22

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27 April 2020

Pieter C. Dorrestein

23

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27 April 2020

Daniel M Durall

25

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27 April 2020

Claire Duvallet

26

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27 April 2020

Christian Edwardson

27

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27 April 2020

Jennifer Fouquier

30

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27 April 2020

Sean M. Gibbons

32

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27 April 2020

Susan P. Holmes

38

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27 April 2020

Hannes Holste

39

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27 April 2020

Curtis Huttenhower

40

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27 April 2020

Stefan Janssen

42

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27 April 2020

Kyo Bin Kang

46

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27 April 2020

Christopher R Keefe

47

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27 April 2020

Tomasz Kosciolek

52

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27 April 2020

Jorden Kreps

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27 April 2020

Yong-Xin Liu

57

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27 April 2020

Erikka Loftfield

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27 April 2020

Catherine A. Lozupone

59

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27 April 2020

Clarisse Marotz

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27 April 2020

Bryan D Martin

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27 April 2020

Daniel McDonald

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27 April 2020

Alexey V Melnik

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27 April 2020

Jose A Navas-Molina

70

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27 April 2020

Stephanie B. Orchanian

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27 April 2020

Talima Pearson

73

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27 April 2020

Daniel Petras

75

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27 April 2020

Adam R Rivers

79

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27 April 2020

Michael Robeson

80

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27 April 2020

Nicola Segata

82

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27 April 2020

Se Jin Song

86

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27 April 2020

Luke R Thompson

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27 April 2020

Peter J Turnbaugh

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27 April 2020

Justin J J van der Hooft

95

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27 April 2020

Emily Vogtmann

98

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27 April 2020

Max von Hippel

99

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27 April 2020

Jonathan Warren

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27 April 2020

Amy D. Willis

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27 April 2020

Qiyun Zhu

110

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27 April 2020

Rob Knight

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27 April 2020

J Gregory Caporaso

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27 April 2020

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Louis Felix Nothias

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27 April 2020

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Sabah Ul-Hasan

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27 April 2020

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Julia M Gauglitz

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27 April 2020

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Madeleine Ernst

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Mingxun Wang

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27 April 2020

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Anupriya Tripathi

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Fernando Vargas

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27 April 2020

Yoshiki Vázquez-Baeza

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27 April 2020

107

Zhenjiang Zech Xu

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27 April 2020

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Lingjing Jiang

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27 April 2020

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Antonio Gonzalez

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27 April 2020

13

Kyle Bittinger

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27 April 2020

41

Gavin A Huttley

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27 April 2020

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Dan Knights

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27 April 2020

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William Walters

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27 April 2020

19

John Chase

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27 April 2020

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Jessica L Metcalf

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27 April 2020

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Austin D Swafford

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27 April 2020

49

Scott T Kelley

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27 April 2020

15

Colin J Brislawn

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27 April 2020

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Alan K Jarmusch

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27 April 2020

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Irina Koester

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27 April 2020

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Lasse Buur Rasmussen

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27 April 2020

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Emily K Cope

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27 April 2020

29

Mehrbod Estaki

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27 April 2020

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Deanna L Gibson

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27 April 2020

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Kestrel Gorlick

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27 April 2020

36

Jiarong Guo

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27 April 2020

37

Benjamin Hillmann

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27 April 2020

45

Benjamin D Kaehler

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27 April 2020

48

Paul Keim

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27 April 2020

54

Morgan G I Langille

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27 April 2020

55

Joslynn Lee

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27 April 2020

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Massoud Maher

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27 April 2020

64

Lauren J McIver

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27 April 2020

69

Ahmad Turan Naimey

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27 April 2020

76

Mary Lai Preuss

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27 April 2020

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Elmar Pruesse

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27 April 2020

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Michael Shaffer

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27 April 2020

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Arron Shiffer

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27 April 2020

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Rashmi Sinha

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27 April 2020

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John R Spear

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27 April 2020

91

Pauline Trinh

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27 April 2020

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Yunhu Wan

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27 April 2020

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Jesse R Zaneveld

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27 April 2020

56

Ruth Ley

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27 April 2020

Sydney C Morgan

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Harriet Alexander

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Harriet Alexander

7

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Gavin M Douglas

24

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27 April 2020

Jamie T Morton

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27 April 2020

Samuel L Peoples

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27 April 2020

Patrick Rosenthal

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27 April 2020

Pedro J Torres

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27 April 2020

Kyle C Weber

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27 April 2020

Charles H D Williamson

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27 April 2020

Yilong Zhang

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27 April 2020

publication date

1 August 2019

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27 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31341288%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

volume

37

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31341288%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31341288%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

page(s)

852-857

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31341288%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

27 April 2020

Jupyter notebook file

1 reference

q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Evaluating the Information Content of Shallow Shotgun Metagenomics

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Species-level functional profiling of metagenomes and metatranscriptomes

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Qiita: rapid, web-enabled microbiome meta-analysis

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Developing climate-smart restoration: Can plant microbiomes be hardened against heat waves?

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Heterogeneity of Microbiota Dysbiosis in Chronic Rhinosinusitis: Potential Clinical Implications and Microbial Community Mechanisms Contributing to Sinonasal Inflammation.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Concurrent gut transcriptome and microbiota profiling following chronic ethanol consumption in nonhuman primates

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Creating a 3D microbial and chemical snapshot of a human habitat.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Tree genetics defines fungal partner communities that may confer drought tolerance

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Steering Soil Microbiomes to Suppress Aboveground Insect Pests

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Sources of variation in foliar secondary chemistry in a tropical forest tree community

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

DADA2: High-resolution sample inference from Illumina amplicon data

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Microbial community assembly and metabolic function during mammalian corpse decomposition.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Orchestrating high-throughput genomic analysis with Bioconductor

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Gut microbiomes of Malawian twin pairs discordant for kwashiorkor

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

Shotgun metaproteomics of the human distal gut microbiota

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7015180

q2-sample-classifier: machine-learning tools for microbiome classification and regression

23 February 2021

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41587-019-0209-9

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/S41587-019-0209-9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31341288%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31341288%20AND%20SRC:MED&resulttype=core&format=json

27 April 2020

PubMed publication ID

31341288

1 reference