Single-cell RNA-sequencing of the brain (Q33780520)

29 July 2017

1 reference

title

Single-cell RNA-sequencing of the brain (English)

1 reference

29 July 2017

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Raquel Cuevas-Diaz Duran

series ordinal

1

1 reference

29 July 2017

Haichao Wei

series ordinal

2

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29 July 2017

Jia Qian Wu

series ordinal

3

1 reference

29 July 2017

publication date

8 June 2017

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Clinical and translational medicine

29 July 2017

published in

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29 July 2017

volume

6

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29 July 2017

issue

1

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29 July 2017

page(s)

20

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describes a project that uses

29 July 2017

WGCNA

object named as

WGCNA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

4 July 2018

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4 July 2018

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4 July 2018

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Single-cell RNA sequencing reveals T helper cells synthesizing steroids de novo to contribute to immune homeostasis

4 July 2018

1 reference

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Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development

4 July 2018

1 reference

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Validation of noise models for single-cell transcriptomics

4 July 2018

1 reference

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Distinct profiles of myelin distribution along single axons of pyramidal neurons in the neocortex

4 July 2018

1 reference

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Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

4 July 2018

1 reference

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Single-cell analysis of the transcriptome and its application in the characterization of stem cells and early embryos

4 July 2018

1 reference

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Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

4 July 2018

1 reference

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The evolution of lncRNA repertoires and expression patterns in tetrapods

4 July 2018

1 reference

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Interneuron cell types are fit to function

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Long non-coding RNAs in neurodevelopmental disorders

4 July 2018

1 reference

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Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

4 July 2018

1 reference

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Full-length RNA-seq from single cells using Smart-seq2.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Quantitative single-cell RNA-seq with unique molecular identifiers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Evolutionary conservation of long non-coding RNAs; sequence, structure, function

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Quantitative assessment of single-cell RNA-sequencing methods.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Accounting for technical noise in single-cell RNA-seq experiments.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Kraken: a set of tools for quality control and analysis of high-throughput sequence data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Analysis of RNA-Seq data with TopHat and Cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cultures

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Protective astrogenesis from the SVZ niche after injury is controlled by Notch modulator Thbs4.

4 July 2018

1 reference

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Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity

4 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

New insights into the classification and nomenclature of cortical GABAergic interneurons

4 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Two methods for full-length RNA sequencing for low quantities of cells and single cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

mRNA-Seq of single prostate cancer circulating tumor cells reveals recapitulation of gene expression and pathways found in prostate cancer

4 July 2018

1 reference

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STAR: ultrafast universal RNA-seq aligner

4 July 2018

1 reference

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An anatomically comprehensive atlas of the adult human brain transcriptome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Activity-dependent human brain coding/noncoding gene regulatory networks

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

4 July 2018

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CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

RSeQC: quality control of RNA-seq experiments

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

RNA-SeQC: RNA-seq metrics for quality control and process optimization

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Counting absolute numbers of molecules using unique molecular identifiers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Synthetic spike-in standards for RNA-seq experiments

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Central dogma at the single-molecule level in living cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

From reinforcement learning models to psychiatric and neurological disorders

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

A high-resolution anatomical atlas of the transcriptome in the mouse embryo

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Purification of specific cell population by fluorescence activated cell sorting (FACS).

4 July 2018

1 reference

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Generation of interneuron diversity in the mouse cerebral cortex.

4 July 2018

1 reference

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Cellular heterogeneity: do differences make a difference?

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Coexistence of quiescent and active adult stem cells in mammals

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Update on models of basal ganglia function and dysfunction

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

A global view of protein expression in human cells, tissues, and organs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

mRNA-Seq whole-transcriptome analysis of a single cell

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Striatal plasticity and basal ganglia circuit function

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

RNA-Seq: a revolutionary tool for transcriptomics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Nature, nurture, or chance: stochastic gene expression and its consequences

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

The evolution of cell types in animals: emerging principles from molecular studies

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Genetic dissection of neural circuits

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Next-generation sequencing transforms today's biology

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

The neuron classification problem

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Neuronal subtype specification in the cerebral cortex

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Introduction to neural stem cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Laser capture microdissection.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

The problem of neuronal cell types: a physiological genomics approach

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

A general framework for weighted gene co-expression network analysis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Competing waves of oligodendrocytes in the forebrain and postnatal elimination of an embryonic lineage.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

General concepts about cell sorting techniques

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5465230

Machine learning. Clustering by fast search and find of density peaks.

4 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS40169-017-0150-9

Quiescent and active hippocampal neural stem cells with distinct morphologies respond selectively to physiological and pathological stimuli and aging

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS40169-017-0150-9

Practical Issues in High-Speed Cell Sorting

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS40169-017-0150-9

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/28597408

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Introduction to the special issue on neural stem cells: regulation and function

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28597408

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Reversed graph embedding resolves complex single-cell trajectories.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28597408

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S40169-017-0150-9

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

1 reference