An integrated transcriptomics-guided genome-wide promoter analysis and next-generation proteomics approach to mine factor(s) regulating cellular differentiation (Q33581704)

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English	An integrated transcriptomics-guided genome-wide promoter analysis and next-generation proteomics approach to mine factor(s) regulating cellular differentiation	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

28 July 2017

An integrated transcriptomics-guided genome-wide promoter analysis and next-generation proteomics approach to mine factor(s) regulating cellular differentiation (English)

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Europe PubMed Central

PubMed publication ID

28 July 2017

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Bhola Shankar Pradhan

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Bhola Shankar Pradhan

6

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Kamal Mandal

1

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Europe PubMed Central

PubMed publication ID

28 July 2017

Samuel L Bader

2

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28 July 2017

Pankaj Kumar

3

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28 July 2017

Dipankar Malakar

4

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28 July 2017

David S Campbell

5

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28 July 2017

Rajesh K Sarkar

7

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28 July 2017

Neerja Wadhwa

8

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28 July 2017

Souvik Sensharma

9

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28 July 2017

Vaibhav Jain

10

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28 July 2017

Robert L Moritz

11

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28 July 2017

Subeer S Majumdar

12

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28 July 2017

publication date

8 January 2017

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28 July 2017

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28 July 2017

An Efficient Method for Generation of Transgenic Rats Avoiding Embryo Manipulation

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Building high-quality assay libraries for targeted analysis of SWATH MS data

1 reference

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Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics

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1 reference

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1 reference

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A switch in Sertoli cell responsiveness to FSH may be responsible for robust onset of germ cell differentiation during prepubartal testicular maturation in rats.

1 reference

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17β-estradiol signaling and regulation of Sertoli cell function

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Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide.

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

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1 reference

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A guided tour of the Trans-Proteomic Pipeline

1 reference

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Positional distribution of human transcription factor binding sites

1 reference

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1 reference

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The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site

1 reference

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Positional bias of general and tissue-specific regulatory motifs in mouse gene promoters.

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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NR5A1 is required for functional maturation of Sertoli cells during postnatal development.

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSW057

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1 reference

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1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSW057

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5397609

10 December 2018

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1 reference

https://pubmed.ncbi.nlm.nih.gov/28065881

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of prenatal and postnatal photoperiod on spermatogenic development in the Djungarian hamster (Phodopus sungorus sungorus)

1 reference

https://pubmed.ncbi.nlm.nih.gov/28065881

12 December 2020

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inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/28065881

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/DNARES/DSW057

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

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