The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data (Q31074822)

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21 December 2019

title

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data (English)

1 reference

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21 December 2019

0 references

Cole JR

1

1 reference

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21 December 2019

Chai B

2

1 reference

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21 December 2019

Farris RJ

3

1 reference

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21 December 2019

Wang Q

4

1 reference

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21 December 2019

Kulam-Syed-Mohideen AS

5

1 reference

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21 December 2019

McGarrell DM

6

1 reference

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21 December 2019

Bandela AM

7

1 reference

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21 December 2019

Cardenas E

8

1 reference

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21 December 2019

language of work or name

English

0 references

publication date

7 November 2006

1 reference

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21 December 2019

published in

Nucleic Acids Research

1 reference

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21 December 2019

volume

35

1 reference

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21 December 2019

issue

Database issue

1 reference

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21 December 2019

page(s)

D169-72

1 reference

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At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies

21 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

BLAST: at the core of a powerful and diverse set of sequence analysis tools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

ARB: a software environment for sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

Phylogenetic approaches for describing and comparing the diversity of microbial communities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

Base-calling of automated sequencer traces using phred. II. Error probabilities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

DNA sequence quality trimming and vector removal

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669760

Small subunit ribosomal RNA modeling using stochastic context-free grammars

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17090583

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKL889

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17090583%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/ColeCFWKMBCGT07

21 December 2019

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17090583%20AND%20SRC:MED&resulttype=core&format=json

21 December 2019

PubMed publication ID

17090583

1 reference