ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data (Q24813756)

Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae

Europe PubMed Central

title

ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data (English)

0 references

3

Jason D Lieb

0 references

author name string

Michael J Buck

series ordinal

1

0 references

Andrew B Nobel

series ordinal

2

0 references

language of work or name

English

0 references

publication date

2005

0 references

published in

Genome Biology

0 references

volume

6

0 references

issue

11

0 references

page(s)

R97

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1297653

A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1297653

Transcriptional regulatory networks in Saccharomyces cerevisiae

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1297653

Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1297653

Functional discovery via a compendium of expression profiles

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1297653

Large-scale transcriptional activity in chromosomes 21 and 22

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1297653

Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1297653

ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1297653

In vivo protein-protein and protein-DNA crosslinking for genomewide binding microarray

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1297653

Genome-wide Mapping of Protein-DNA Interactions by Chromatin Immunoprecipitation and DNA Microarray Hybridization

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1297653

Characterizing transcription factor binding sites using formaldehyde crosslinking and immunoprecipitation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1297653

GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1297653

DNA-binding requirements of the yeast protein Rap1p as selected in silico from ribosomal protein gene promoter sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1297653

28 September 2017

Identifiers

DOI

10.1186/GB-2005-6-11-R97

1 reference

Dimensions Publication ID

1041230054

0 references

1 reference

1 reference

PubMed publication ID

16277752

1 reference