Gene family evolution across 12 Drosophila genomes (Q21145221)

17 August 2022

Mira V Han

2

Mira V

Han

1 reference

17997610

17 August 2022

Sang-Gook Han

series ordinal

3

author given names

Sang-Gook

author last names

Han

1 reference

17997610

Creative Commons Attribution 4.0 International

17 August 2022

language of work or name

English

0 references

publication date

November 2007

0 references

published in

PLOS Genetics

0 references

volume

3

0 references

issue

11

0 references

page(s)

e197

0 references

copyright license

start time

9 November 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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A Genomic Perspective on Protein Families

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19 March 2017

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Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting

19 March 2017

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Time dependency of molecular rate estimates and systematic overestimation of recent divergence times

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7 April 2017

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Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

12 September 2017

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12 September 2017

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12 September 2017

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Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila

12 September 2017

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Horizontal gene transfer in plants

12 September 2017

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Repression and loss of gene expression outpaces activation and gain in recently duplicated fly genes

12 September 2017

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Estimating the tempo and mode of gene family evolution from comparative genomic data

12 September 2017

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Parallel evolution of chimeric fusion genes

12 September 2017

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Rapid evolution through gene duplication and subfunctionalization of the testes-specific alpha4 proteasome subunits in Drosophila

12 September 2017

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Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

12 September 2017

1 reference

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Extensive gene gain associated with adaptive evolution of poxviruses

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

An evolutionary analysis of orphan genes in Drosophila

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

The Drosophila melanogaster seminal fluid protein Acp62F is a protease inhibitor that is toxic upon ectopic expression

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

The evolutionary analysis of "orphans" from the Drosophila genome identifies rapidly diverging and incorrectly annotated genes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

A screen for fast evolving genes from Drosophila

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Duplication and divergence of the genes of the alpha-esterase cluster of Drosophila melanogaster

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Natural Selection and the Origin of jingwei , a Chimeric Processed Functional Gene in Drosophila

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Organization and mapping of a sequence on the Drosophila melanogaster X and Y chromosomes that is transcribed during spermatogenesis.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Further evidence consistent with Stellate's involvement in meiotic drive.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

lola encodes a putative transcription factor required for axon growth and guidance in Drosophila

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Is Stellate a relict meiotic driver?

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Can deleterious mutations explain the time dependency of molecular rate estimates?

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

The gain and loss of genes during 600 million years of vertebrate evolution

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

A hybrid micro-macroevolutionary approach to gene tree reconstruction

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Adaptive loss of an old duplicated gene during incipient speciation.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

An adaptive radiation model for the origin of new gene functions

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Birth-and-death evolution of the Cecropin multigene family in Drosophila

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Molecular evolution and population genetics of duplicated accessory gland protein genes in Drosophila

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Origin and evolution of a new gene expressed in the Drosophila sperm axoneme.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Extent of gene duplication in the genomes of Drosophila, nematode, and yeast

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

A simple algorithm to infer gene duplication and speciation events on a gene tree.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Genes lost during evolution.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Chromosomal effects of rapid gene evolution in Drosophila melanogaster.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

GeneTree: comparing gene and species phylogenies using reconciled trees

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Selective sweep of a newly evolved sperm-specific gene in Drosophila

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

The evolution of functionally novel proteins after gene duplication.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2065885

Shedding genomic ballast: extensive parallel loss of ancestral gene families in animals

29 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/17997610

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Likelihood-ratio tests for positive selection of human and mouse duplicate genes reveal nonconservative and anomalous properties of widely used methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/17997610

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.0030197

1 reference

release_3ax7rq2gzfbozja3itr2yvtfjm

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/3ax7rq2gzfbozja3itr2yvtfjm

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

1 reference

17997610

1 reference