Microorganisms 11 01722 v2
Microorganisms 11 01722 v2
Microorganisms 11 01722 v2
Review
Pulmonary Tuberculosis in Children: A Forgotten Disease?
Umberto Pelosi 1 , Roberta Pintus 2, * , Salvatore Savasta 3 and Vassilios Fanos 2
Abstract: Even today, tuberculosis in childhood is a disease that is often undiagnosed and under-
treated. In the absence of therapy with antituberculosis drugs, children in the first years of life have a
high degree of severe forms and mortality. In these children, symptoms are often not very specific
and can easily be confused with other diseases of bacterial, viral or fungal etiology, making diagnosis
more difficult. Nevertheless, the introduction of new diagnostic techniques has allowed a more rapid
identification of the infection. Indeed, Interferon gamma release assay (IGRA) is preferred to the
Mantoux, albeit with obvious limitations in children aged <2 years. While the Xpert Mtb/RIF Ultra
test is recommended as an initial diagnostic investigation of the gastric aspirate and/or stools in
children with signs and symptoms of pulmonary tuberculosis. The drugs used in the treatment of
susceptible and resistant TB are the same as those used in adults but doses and combinations are
different in the pediatric age. In children, brief therapy is preferable in both the latent infection and
the active disease, as a significant reduction in side effects is obtained.
Keywords: children; pathogenesis; diagnosis; skin tests; Xpert MtB/Rif Ultra; therapy; prevention
1. Introduction
Citation: Pelosi, U.; Pintus, R.;
To date, about 1.5 million children contract tuberculosis (TB) every year. They represent
Savasta, S.; Fanos, V. Pulmonary
1.1% of the entire affected population, of these in 2020, only 36.5% were notified to the
Tuberculosis in Children: A Forgotten
competent authorities. TB is currently considered one of the 10 causes of death in childhood
Disease? Microorganisms 2023, 11,
1722. https://doi.org/10.3390/
as stated in the WHO Global Tuberculosis Report. Furthermore, this document stated that,
microorganisms11071722
in 2020, TB was responsible for 16% of global deaths in children. The main cause of these
deaths is above all the reduction, particularly in the most endemic countries, of access to
Academic Editor: Antonella health facilities and the adherence to therapeutic protocols. In Italy in 2020, 2287 cases of TB
d’Arminio Monforte
were recorded, 1.8% aged <5 years, 2.8% aged 5–14 and 15.1% aged 15–24 [1–3]. Currently,
Received: 15 March 2023 it is considered one of the 10 causes of death in childhood. In the course of the pandemic of
Revised: 20 June 2023 SARS-CoV-2, in 2020, a sharp drop occurred in access to diagnosis and therapy services
Accepted: 26 June 2023 for children aged 5–15 years (63%) and a clear reduction in prophylaxis for tuberculosis
Published: 30 June 2023 infection in children < 5 years of age (72%). The reduction in access to hospital facilities
has consequently led to a significant increase in new cases and deaths in the following
years [4–6]. Furthermore, children are more vulnerable to tuberculosis infection because
of their immunological immaturity characterized by an altered innate immunity in the
Copyright: © 2023 by the authors.
lungs, due to a reduced recruitment of macrophages to the site of infection and a decreased
Licensee MDPI, Basel, Switzerland.
production of IL-12, which is essential for the initial polarization of the Th1 lymphocytes,
This article is an open access article
which, in turn, are important to maintain an efficient transcription of IFN-γ [7–9].
distributed under the terms and
Moreover, children aged <5 years are more exposed to the infection and to the most
conditions of the Creative Commons
severe forms of the disease, indeed about, in pediatric age, 80% of TB deaths in children
Attribution (CC BY) license (https://
occur mainly in this age group. Sometimes these children have silent forms of TB with mild
creativecommons.org/licenses/by/
4.0/).
non-specific symptoms and do not develop the disease. In these cases, there is a 10% risk of
by PPR3 membrane receptors which, when stimulated, via intracellular messengers activate
transcription, leading to the production of proinflammatory cytokines and chemokines.
In turn, this leads to an increased vascular permeability, causing the recruitment of other
inflammatory cells, in particular dendritic cells. Thus, phagocytosis is activated through
various mechanisms: (a) recognition of the mannose residues of the MTB by the receptors of
the macrophage where the lipoarabinomannan present on the surface binds, (b) activation
of the C3 proteins of the complement present in the alveolar space, which are recognized
by the complement receptors present on the surface of macrophages [31–33].
Thus, MTB is phagocytosed inside the vacuoles and following the secretion of some
cytokines and chemokines (IFN-γ, TNF-α, IL-1β, IL-6 and IL-23) is killed or limited in
its growth [34]. Furthermore, most of the macrophages control the infection by rapidly
activating some antimicrobial mechanisms: (a) fusion of phagosomes with lysosomes
(formation of the phago-lysosomal complex), (b) autophagy, and (c) oxidative stress [33–35].
Nevertheless, bronchoalveolar cell responses featured in TB patients consist of lymphocytic
alveolitis and immature macrophage alveolitis. This initial response involving innate
immunity is sufficient to eliminate MBT.
However, it tries to survive inside the host by inhibiting: (a) the fusion of phagosomes
with lysosomes, (b) the maturation of macrophage phagocytosis by suppressing phagosome
acidification and (c) the production in macrophages of ROS by catalase-peroxidase (Kat
G), by reducing the action of oxidative stress [36–39]. Then, it is able to replicate inside the
macrophages and to invade the pulmonary interstitium.
For their part, macrophages and dendritic cells, resident in the pulmonary interstitium,
phagocytize MTB and migrate to the lymph nodes where they present MTB antigens to T
cells that differentiate into CD4+ and CD8+ [40,41]. Then, the CD4 and CD8 cells return to
the lungs thanks to the chemokines produced at the site of infection. Here, these activated
T cells bind to the MHC/antigen complexes on the surface of the infected macrophages
and produce a range of cytokines, including IFNγ, leading to the further activation of
macrophages that kill MTBs that escaped the initial phagocytosis [39,42]. Moreover, TNF-α
produced by macrophages, T cells, dendritic cells, fibroblasts and endothelial cells plays a
key role in the formation of the granuloma at the site of the infection [43,44].
Indeed, the accumulation of lymphocytes, macrophages, dendritic cells and epithe-
lioid cells at the site of the infection determines the formation of the granuloma within
which the MTB is contained and where it can persist for several decades. In healthy close
Microorganisms 2023, 11, 1722 4 of 16
contacts of TB patients and during active pulmonary TB, the immune response is confined
to the lung and characterized by an exuberant Th1 lymphocyte response, which is counter-
acted by local suppressive immune mechanisms, as suggested by the recent evidence [45].
Generally, a patient with a primary MBT infection is asymptomatic and undergoes clinical
but not biological recovery, remaining infected with quiescent mycobacteria. This clinical
quiescence often persists for the entire life of the individual. In a smaller percentage of
cases, subjects with tuberculosis infection may immediately manifest the active disease
(primary tuberculosis) or undergo a clinical reactivation of the infection during their life
(secondary tuberculosis), due to the lack of development or maintenance of an effective
immune response.
Moreover, numerous evidences suggest that the gut microbiota modulates the host
immune response against MTB and that this mechanism could constitute a potential
therapeutic target [52].
Additionally, subjects affected by TB present a greater abundance of Streptococcus,
Gramulicatella and Pseudomonas. While Prevotella, Leptotrichia, Treponema, Catonella and
Coprococcus are less represented in subjects with TB than in healthy controls.
Moreover, subjects with recurrent TB show a reduced frequency of some genera, such
as Bulleidia and Atopobium compared to subjects with new onset TB.
Finally, it has recently been hypothesized that the microbiome through the gut/lung
axis plays an important role in granuloma formation, promoting the Th1 and Th17 re-
sponse [52].
individual profile of the host microbiota, its profile before the disease or individually
modified by therapy, which interacts with specific epitopes of the pathogen.
5. Diagnosis
Nowadays, diagnosis in children is often difficult, as the signs and symptoms, espe-
cially in the first years of life, can be confused with other pathologies.
The diagnosis is based on 1. Anamnesis, 2. Clinical criteria, 3. Skin Test 4. New
diagnostic tests 5. Bacteriological tests and 6. Radiological investigations.
5.1. Anamnesis
The medical history of a contact with known cases of TB allows to suspect infection
or disease. In children and in particular in those aged <2 years, the symptoms are often
not very specific and can easily be confused with other diseases of bacterial, viral or fungal
etiology, making the diagnosis more difficult [9,67]. Signs and symptoms that can guide
the diagnosis are reported in Table 3.
The simultaneity of some symptoms, such as persistent cough, listlessness and weight
loss, have a predictive value in 80% of children with pulmonary TB [11,68].
Figure
Figure 2. Scrofuloderma.
2. Scrofuloderma.
Mantoux IGRA
Recommended age All >2 years
Cross reactivity with BCG YES NO
Distinction between infection and disease NO NO
Cross reactrivity with non tubercular Mb YES Not Much
Operator Dependent Not dependent
Cost Low High
These tests also do not allow to distinguish the latent infection from the disease, such
as the Mantoux test, and they are not recommended in children in the first years of life as
they have a low sensitivity in this age group [87–89].
Recently, new diagnostic tests based on the rapid determination of MTB DNA in the
sample (NAAT nucleic acid amplification test and Xpert Mtb/RIF Ultra test). While the
LF-LAM test (Lateral Flow Urine Lipoarabinomannan) is based on the identification of the
liposaccharide antigen LAM present on the cell wall of MTB [35].
Among these tests, the most recommended [6] are the Xpert Mtb/RIF Ultra and the
LF-LAM. The first is recommended as an initial test in pediatric ages in cases of pulmonary
tuberculosis. It can be performed on various samples: feces (97–100% specificity and
32–90% sensitivity) and gastric aspirate (94% specificity and sensitivity of 71.5%). The Xpert
Mtb/RIF Ultra assay appears to be useful, in addition to diagnosis, for the identification
in a single assay of resistance-associated mutations for rifampin, isoniazid, amikacin and
capreomycin [90–93]. While the LF-LAM test (Lateral Flow Urine Li-poarabinomannan) is
indicated as an additional test in HIV positive children, presenting signs and symptoms of
pulmonary tuberculosis and in those who are HIV positive without symptoms with a CD4
cell count < 100/mm3 [6,8].
salic solution), on gastric aspirate, nasopharyngeal secretion, on urine and recent feces, are
recommended [97]. Recent studies have shown that the examination of multiple samples
increases the diagnostic sensitivity [98]. In children, due to low bacterial load, the MTB
culture has a sensitivity only of 7–40% and requires at least 2–4 weeks for growth, which
limits the use of this assay [27]. It is strongly recommended to carry out the culture by
combining solid and liquid media [99].
6. Therapy
The main objectives of therapy are to prevent the progression from infection to disease
and to cure the active form, in view of the fact that the risk of the onset of serious forms
remains high even 2 years after infection and is particularly high in children aged <2 years.
The drugs used in the treatment of susceptible and resistant TB are the same used in adults,
they vary in pediatric age both in doses and combinations. The drugs classification is
shown in Table 7.
Compared to adults, children have fewer side effects related to therapy. Indeed, the
risk of hepatotoxicity is greater only in obese children (hepatic steatosis) and with the
concomitant administration of anticonvulsant drugs. For these children, it is advisable
to determine liver function before starting treatment and 1–2 months after the beginning.
Isoniazid (INH), rifampicin (RIF), pyrazinamide (PZA), ethambutol (EMB), rifabutin and
rifapentine are the drugs mostly used both in the therapy of latent infection and in the
active disease. Recently, it has been recommended to increase the dosage of some of these
drugs: IH 10–15 mg/Kg, RIF 10–20 mg/Kg, PZA 30–40 mg/Kg and EMB 15–25 mg/Kg [6].
7. Vaccine
Currently, BCG (Bacillus Calmette–Guerin) is still the only available vaccine in the
world [118]. It is particularly active in children in preventing the onset of the most serious
forms (meningitis and miliary) in 50% of cases and pulmonary disease in 80% of cases,
while it is unable to prevent the reactivation of the latent pulmonary infection. It can cause
disseminated forms when administered to immunodeficient and HIV positive children.
As BCG’s protection against lung infection decreases with age, there is the need for new
vaccines. Today, several new vaccines derived from killed mycobacteria, live vaccines
attenuated by genetic modifications and recombinant vaccines with viral vectors are being
tested and must complete the trial cycle to be approved [119].
8. Conclusions
TB is still a dangerous disease in childhood, as children represent the population
at greatest risk of morbidity and mortality. Furthermore, the COVID-19 pandemic has
highlighted how the decrease in access to health facilities has led to a significant delay
in diagnosis and treatment, contributing to an increase in deaths and new cases in the
following years [120]. For what concerns the diagnosis in children, it is not always simple,
especially in the first years of life, even if the introduction of new diagnostic techniques
has allowed a more rapid identification of the infection. The use of the IGRA is preferred
to the Mantoux, albeit with obvious limitations in children aged <2 years. While the
Xpert Mtb/RIF Ultra test is recommended as an initial diagnostic test of gastric aspirate
and/or stools in children with signs and symptoms of pulmonary tuberculosis. At present
it is commonly believed that there is an interrelationship between the microbiota, the
tuberculosis disease and therapy. MBT infection is linked to a peculiar and complex
immunological response, which is microbiota dependent, the profound modifications
mainly affecting the intestinal microbiota, are responsible for a lower resistance of the
subject against M. tuberculosis. From the imaging point of view, the chest X-ray is now
an important examination in children with pulmonary tuberculosis with symptoms but
Microorganisms 2023, 11, 1722 12 of 16
negative tests. Moreover, it is important to perform the lateral view in children < 5 years of
age as well.
In addition, children represent the most suitable population for brief therapy both in
the latent infection and in the active disease since a significant reduction in the side effects
is obtained.
Finally, in recent years, a greater increase in drug-resistant TB cases has been observed,
partly related to immigration from high-incidence countries. Resistance to antituberculosis
drugs is rare in children, with an estimated 25,000–32,000 children worldwide each year
developing drug resistance. It is believed that new studies are needed to better define the
therapeutic approach in drug resistant forms, especially in the age < 5 years.
Author Contributions: U.P. idealized and wrote the manuscript, R.P., S.S. and V.F., edited the
manuscript, the figures, the tables and reviewed the manuscript drafts. All authors have read and
agreed to the published version of the manuscript.
Funding: This research received no external funding.
Institutional Review Board Statement: Not applicable.
Informed Consent Statement: Not applicable.
Data Availability Statement: Not applicable.
Conflicts of Interest: The authors declare no conflict of interest.
References
1. Dodd, P.J.; Yuen, C.M.; Sismanidis, C.; Seddon, J.A.; Jenkins, H.E. The global burden of tuberculosis mortality in children: A
mathematical modelling study. Lancet Glob. Health 2017, 5, e898–e906. [CrossRef] [PubMed]
2. Cowger, T.L.; Wortham, J.M.; Burton, D.C. Epidemiology of tuberculosis among children and adolescents in the USA, 2007–2017,
an analysis of national surveillance data. Lancet Public Health 2019, 4, e506–e516. [CrossRef]
3. Yerramsetti, S.; Cohen, T.; Atun, R.; Menzies, N.A. Global estimates of paediatric tuberculosis incidence in 2013–2019, a
mathematical modelling analysis. Lancet Glob. Health 2022, 10, e207–e215. [CrossRef]
4. Bagcchi, S. Dismal global tuberculosis situation due to COVID-19. Lancet Infect. Dis. 2021, 21, 1636. [CrossRef] [PubMed]
5. Lassi, Z.S.; Naseem, R.; Salam, R.A.; Siddiqui, F.; Das, J.K. The impact of the COVID-19 pandemic on immunization campaigns
and programs: A systematic review. Int. J. Environ. Res. Public Health 2021, 18, 988. [CrossRef]
6. World Health Organization. Global Tuberculosis Report 2022; World Health Organization: Geneva, Switzerland, 2022. Available
online: https://www.who.int/teams/global-tuberculosis-programme/tb-reports/global-tuberculosis-report-2022 (accessed
on 22 January 2022).
7. Goriely, S.; Vincort, B.; Stordeur, P.; Vekermans, J.; Willems, F.; Goddman, M.; De Wit, J. Deficient IL-12 (P35) gene expression by
dendritic cells derived from neonatal monocytes. J. Immunol. 2001, 166, 2141–2146. [CrossRef] [PubMed]
8. Newton, S.M.; Brent, A.J.; Anderson, S.; Whittaker, S.; Kampmann, B. Paediatric tuberculosis. Lancet Infect. Dis. 2008, 8, 498–510.
[CrossRef]
9. Jaganath, D.; Beaudry, J.; Salazar-Austin, N. Tuberculosis in Children. Infect. Dis. Clin. N. Am. 2022, 36, 49–71. [CrossRef]
10. Gaensbauer, J.; Broadhurst, R. Recent innovations in diagnosis and treatment of paediatric tuberculosis. Curr. Infect. Dis. Rep.
2019, 21, 4. [CrossRef]
11. Tchakounte, Y.B.; Tchounga, B.K.; Graham, S.M.; Bonnet, M. Tuberculosis Infection in Children and Adolescents. Pathogens 2022,
11, 1512. [CrossRef]
12. Howard-Jones, A.R.; Marais, B.J. Tuberculosis in children: Screening, diagnosis and management. Curr. Opin. Pediatr. 2020, 32,
395–404. [CrossRef] [PubMed]
13. Mandalakas, A.M.; Kirchner, H.L.; Lombard, C.; Walzl, G.; Grewal, H.M.; Gie, R.P.; Hesseling, A.C. Well-quantified tuberculosis
exposure is a reliable surrogate measure of tuberculosis infection. Int. J. Tuberc. Lung Dis. 2012, 16, 1033–1039. [CrossRef]
[PubMed]
14. Roya-Pabon, C.L.; Perez-Velez, C.M. Tuberculosis exposure, infection and disease in children: A systematic diagnostic approach.
Pneumonia 2016, 8, 23. [CrossRef] [PubMed]
15. Cambier, C.J.; Banik, S.M.; Buonomo, J.A.; Bertozzi, C.R. Spreading of a mycobacterial cell-surface lipid into host epithelial
membranes promotes infectivity. eLife 2020, 9, e60648. [CrossRef] [PubMed]
16. Scordo, J.M.; Olmo-Fontánez, A.M.; Kelley, H.V.; Sidiki, S.; Arcos, J.; Akhter, A.; Wewers, M.D.; Torrelles, J.B. The human lung
mucosa drives differential Mycobacterium tuberculosis infection outcome in the alveolar epithelium. Mucosal. Immunol. 2019, 12,
795–804. [CrossRef]
Microorganisms 2023, 11, 1722 13 of 16
17. Moliva, J.I.; Duncan, M.A.; Olmo-Fontánez, A.; Akhter, A.; Arnett, E.; Scordo, J.M.; Ault, R.; Sasindran, S.J.; Azad, A.K.; Montoya,
M.J.; et al. The Lung Mucosa Environment in the Elderly Increases Host Susceptibility to Mycobacterium tuberculosis Infection.
J. Infect. Dis. 2019, 220, 514–523. [CrossRef]
18. Arcos, J.; Sasindran, S.J.; Moliva, J.I.; Scordo, J.M.; Sidiki, S.; Guo, H.; Venigalla, P.; Kelley, H.V.; Lin, G.; Diangelo, L.; et al.
Mycobacterium tuberculosis cell wall released fragments by the action of the human lung mucosa modulate macrophages to
control infection in an IL-10-dependent manner. Mucosal. Immunol. 2017, 10, 1248–1258. [CrossRef]
19. de Martino, M.; Lodi, L.; Galli, L.; Chiappini, E. Immune Respo to Mycobacterium tuberculosis: A Narrative Review. Front.
Pediatr. 2019, 7, 350. [CrossRef]
20. Herrera, M.T.; Guzmán-Beltrán, S.; Bobadilla, K.; Santos-Mendoza, T.; Flores-Valdez, M.A.; Gutiérrez-González, L.H.; González,
Y. Human Pulmonary Tuberculosis: Understanding the Immune Response in the Bronchoalveolar System. Biomolecules 2022,
12, 1148. [CrossRef]
21. Chai, Q.; Lu, Z.; Liu, C.H. Host defense mechanisms against Mycobacterium tuberculosis. Cell. Mol. Life. Sci. 2020, 77, 1859–1878.
[CrossRef]
22. Huang, L.; Nazarova, E.V.; Tan, S.; Liu, Y.; Russell, D.G. Growth of Mycobacterium tuberculosis in vivo segregates with host
macrophage metabolism and ontogeny. J. Exp. Med. 2018, 215, 1135–1152. [CrossRef]
23. Nolt, D.; Starke, J.R. Tuberculosis infection in children and adolescents: Testing and treatment. Pediatrics 2021, 148, e2021054663.
[CrossRef]
24. Nakaoka, H.; Lawson, L.; Squine, S.B. Risk of tuberculosis among children. Emerg. Infect. Dis. 2006, 12, 1383–1388. [CrossRef]
25. Koeken, V.A.C.M.; Verrall, A.J.; Netea, M.G.; Hill, P.C.; van Crevel, R. Trained innate immunity and resistance to Mycobacterium
tuberculosis infection. Clin. Microbiol. Infect. 2019, 25, 1468–1472. [CrossRef] [PubMed]
26. Ferluga, J.; Yasmin, H.; Al-Ahdal, M.N.; Bhakta, S.; Kishore, U. Natural and trained innate immunity against Mycobacterium
tuberculosis. Immunobiology 2020, 225, 151951. [CrossRef] [PubMed]
27. Hu, G.; Christman, J.W. Editorial: Alveolar macrophages in lung inflammation and resolution. Front. Immunol. 2019, 10, 2275.
[CrossRef] [PubMed]
28. Parker, H.A.; Forrester, L.; Kaldor, C.D.; Dickerhof, N.; Hampton, M.B. Antimicrobial Activity of Neutrophils Against Mycobacte-
ria. Front. Immunol. 2021, 12, 782495. [CrossRef]
29. Lovewell, R.R.; Baer, C.E.; Mishra, B.B.; Smith, C.M.; Sassetti, C.M. Granulocytes act as a niche for Mycobacterium tuberculosis
growth. Mucosal. Immunol. 2021, 202, 229–241. [CrossRef]
30. Hampton, M.B.; Dickerho, N. Inside the phagosome: A bacterial perspective. Immunol. Rev. 2023, 314, 197–209. [CrossRef]
31. Liu, C.H.; Liu, H.; Ge, B. Innate immunity in tuberculosis: Host defense versus pathogen evasion. Cell. Mol. Immunol. 2017, 14,
963–975. [CrossRef]
32. Cohen, S.B.; Gern, B.H.; Delahaye, J.L.; Adams, K.N.; Plumlee, C.R.; Winkler, J.K.; Sherman, D.R.; Gerner, M.Y.; Urdahl, K.B.
Alveolar Macrophages Provide an Early Mycobacterium tuberculosis Niche and Initiate Dissemination. Cell Host Microbe 2018, 24,
439–446.e4. [CrossRef] [PubMed]
33. Shariq, M.; Quadir, N.; Alam, A.; Zarin, S.; Sheikh, J.A.; Sharma, N.; Samal, J.; Ahmad, U.; Kumari, I.; Hasnain, S.E.; et al. The
exploitation of host autophagy and ubiquitin machinery by Mycobacterium tuberculosis in shaping immune responses and host
defense during infection. Autophagy 2023, 19, 3–23. [CrossRef] [PubMed]
34. Behar, S.M.; Martin, C.J.; Booty, M.G.; Nishimura, T.; Zhao, X.; Gan, H.X.; Divangahi, M.; Remold, H.G. Apoptosis is an innate
defense function of macrophages against Mycobacterium tuberculosis. Mucosal. Immunol. 2011, 4, 279–287. [CrossRef] [PubMed]
35. Maphalle, L.N.F.; Michniak-Kohn, B.B.; Ogunrombi, M.O.; Adeleke, O.A. Pediatric Tuberculosis Management: A Global Challenge
or Breakthrough? Children 2022, 9, 1120. [CrossRef]
36. Zhai, W.; Wu, F.; Zhang, Y.; Fu, Y.; Liu, Z. The Immune Escape Mechanisms of Mycobacterium tuberculosis. Int. J. Mol. Sci. 2019,
20, 340. [CrossRef]
37. Chai, Q.; Wang, L.; Liu, C.H.; Ge, B. New insights into the evasion of host innate immunity by Mycobacterium tuberculosis. Cell.
Mol. Immunol. 2020, 17, 901–913. [CrossRef]
38. Zhang, L.; Jiang, X.; Pfau, D.; Ling, Y.; Nathan, C.F. Type I interferon signaling mediates Mycobacterium tuberculosis-induced
macrophage death. J. Exp. Med. 2021, 218, e20200887. [CrossRef]
39. Chandra, P.; Grigsby, S.J.; Philips, J.A. Immune evasion and provocation by Mycobacterium tuberculosis. Nat. Rev. Microbiol. 2022,
20, 750–766. [CrossRef]
40. Boni, F.G.; Hamdi, I.; Koundi, L.M.; Shrestha, K.; Xie, J. Cytokine storm in tuberculosis and IL-6 involvement. Infect. Genet. Evol.
2022, 97, 105166. [CrossRef]
41. Kim, H.; Shin, S.J. Pathological and protective roles of dendritic cells in Mycobacterium tuberculosis infection: Interaction between
host immune responses and pathogen evasion. Front. Cell. Infect. Microbiol. 2022, 12, 891878. [CrossRef]
42. Naeem, M.A.; Ahmad, W.; Tyagi, R.; Akram, Q.; Younus, M.; Liu, X. Stealth Strategies of Mycobacterium tuberculosis for Immune
Evasion. Curr. Issues Mol. Biol. 2021, 41, 597–616. [CrossRef]
43. Kiran, D.; Podell, B.K.; Chambers, M.; Basaraba, R.J. Host-directed therapy targeting the Mycobacterium tuberculosis granuloma: A
review. Semin. Immunopathol. 2016, 38, 167–183. [CrossRef]
44. Ozturk, M.; Sabeel, S.; Motaung, B.; Parihar, S.P.; Thienemann, F.; Brombacher, F. Targeting Molecular Inflammatory Pathways in
Granuloma as Host-Directed Therapies for Tuberculosis. Front. Immunol. 2021, 12, 733853.
Microorganisms 2023, 11, 1722 14 of 16
45. Schwander, S.; Dheda, K. Human lung immunity against Mycobacterium tuberculosis: Insights into pathogenesis and protection.
Am. J. Respir. Crit. Care Med. 2011, 183, 696–707. [CrossRef] [PubMed]
46. Turnbaugh, P.J.; Ley, R.E.; Hamady, M.; Fraser-Liggett, C.M.; Knight, R.; Gordon, J.I. The human microbiome project. Nature 2007,
449, 804–810. [CrossRef] [PubMed]
47. Underhill, D.M.; Iliev, I.D. The mycrobiota: Interactions between commensal fungi and the host immune system. Nat. Rev.
Immunol. 2014, 14, 405–416. [CrossRef]
48. Mitchell, A.B.; Oliver, B.G.; Glanville, A.R. Translational Aspects of the Human Respiratory Virome. Am. J. Respir. Crit. Care Med.
2016, 194, 1458–1464. [CrossRef]
49. Dickson, R.P.; Erb-Downward, J.R.; Martinez, F.J.; Huffnagle, G.B. The microbiome and the respiratory tract. Annu. Rev. Physiol.
2016, 78, 481–504. [CrossRef]
50. Zheng, D.; Liwinski, T.; Elinav, E. Interaction between microbiota and immunity in health and disease. Cell Res. 2020, 30, 492–506.
[CrossRef]
51. Comberiati, P.; Di Cicco, M.; Paravati, F.; Pelosi, U.; Di Gangi, A.; Arasi, S.; Barni, S.; Caimmi, D.; Mastrorilli, C.; Licari, A.; et al.
The Role of Gut and Lung Microbiota in Susceptibility to Tuberculosis. Int. J. Environ. Res. Public Health 2021, 18, 12220. [CrossRef]
52. Langdon, A.; Crook, N.; Dantas, G. The effects of antibiotics on the microbiome throughout development and alternative
approaches for therapeutic modulation. Genome Med. 2016, 8, 39. [CrossRef] [PubMed]
53. Jernberg, C.; Lofmark, S.; Edlund, C.; Jansson, J.K. Long-term impacts of antibiotic exposure on the human intestinal microbiota.
Microbiology 2010, 156, 33216–33223. [CrossRef]
54. O’Toole, R.F.; Gautam, S.S. The host microbiome and impact of tuberculosis chemotherapy. Tuberculosis 2018, 113, 26–29.
[CrossRef] [PubMed]
55. Hong, B.Y.; Paulson, J.N.; Stine, O.C.; Weinstock, G.M.; Cervantes, J.L. Meta-analysis of the lung microbiota in pulmonary
tuberculosis. Tuberculosis 2018, 109, 102. [CrossRef] [PubMed]
56. Namasivayam, S.; Maiga, M.; Yuan, W.; Thovarai, V.; Costa, D.L.; Mittereder, L.R.; Wipperman, M.F.; Glickman, M.S.; Dzutsev, A.;
Trinchieri, G.; et al. Longitudinal profiling reveals a persistent intestinal dysbiosis triggered by conventional anti-tuberculosis
therapy. Microbiome 2017, 5, 71. [CrossRef]
57. Hu, Y.; Yang, Q.; Liu, B.; Dong, J.; Sun, L.; Zhu, J.; Su, H.; Yang, J.; Yang, F.; Chen, X.; et al. Gut microbiota associated with
pulmonary tuberculosis and dysbiosis caused by anti-tuberculosis drugs. J. Infect. 2019, 78, 317–322. [CrossRef]
58. Luo, M.; Liu, Y.; Wu, P.; Luo, D.X.; Sun, Q.; Zheng, H.; Hu, R.; Pandol, S.J.; Li, Q.F.; Han, Y.P.; et al. Alternation of Gut Microbiota
in Patients with Pulmonary Tuberculosis. Front. Physiol. 2017, 8, 822. [CrossRef]
59. Drain, P.K.; Bajema, K.L.; Dowdy, D.; Dheda, K.; Naidoo, K.; Schumacher, S.G.; Ma, S.; Meermeier, E.; Lewinsohn, D.M. Incipient
and subclinical tuberculosis: A clinical review of early stages and progression of infection. Clin. Microbiol. Rev. 2018, 31, e00021-18.
[CrossRef]
60. Arpaia, N.; Campbell, C.; Fan, X.; Dikiy, S.; van der Veeken, J.; deRoos, P.; Liu, H.; Cross, J.R.; Pfeffer, K.; Coffer, P.J.; et al.
Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation. Nature 2013, 504, 451–455.
[CrossRef]
61. Genestet, C.; Bernard-Barret, F.; Hodille, E.; Ginevra, C.; Ader, F.; Goutelle, S.; Lina, G.; Dumitrescu, O. Antituberculous drugs
modulate bacterial phagolysosome avoidance and autophagy in Mycobacterium tuberculosis-infected macrophages. Tuberculosis
2018, 111, 67–70. [CrossRef]
62. Khan, N.; Mendonca, L.; Dhariwal, A.; Fontes, G.; Menzies, D.; Xia, J.; Divangahi, M.; King, I.L. Intestinal dysbiosis compromises
alveolar macrophage immunity to Mycobacterium tuberculosis. Mucosal Immunol. 2019, 12, 772–783. [CrossRef]
63. Yang, J.H.; Bhargava, P.; McCloskey, D.; Mao, N.; Palsson, B.O.; Collins, J.J. Antibiotic-Induced Changes to the Host Metabolic
Environment Inhibit Drug Efficacy and Alter Immune Function. Cell Host Microbe 2017, 22, 757–765.e3. [CrossRef]
64. Vorkas, C.K.; Wipperman, M.F.; Li, K.; Bean, J.; Bhattarai, S.K.; Adamow, M.; Wong, P.; Aubé, J.; Juste, M.A.J.; Bucci, V.; et al.
Mucosal-associated invariant and γδ T cell subsets respond to initial Mycobacterium tuberculosis infection. JCI 2018, 3, e121899.
[CrossRef] [PubMed]
65. Periyasamy, K.M.; Ranganathan, U.D.; Tripathy, S.P.; Bethunaickan, R. Vitamin D—A host directed autophagy mediated therapy
for tuberculosis. Mol. Immunol. 2020, 127, 238–244. [CrossRef]
66. Ismailova, A.; White, J.H. Vitamin D, infections and immunity. Rev. Endocr. Metab. Disord. 2022, 23, 265–277. [CrossRef] [PubMed]
67. Chiappini, E.; Lo Vecchio, A.; Garazzino, S.; Marseglia, G.L.; Bernardi, F.; Castagnola, E.; Tomà, P.; Cirillo, D.; Russo, C.; Gabiano,
C.; et al. Recommendations for the diagnosis of pediatric tuberculosis. Eur. J. Clin. Microbiol. Infect. Dis. 2016, 35, 1–18. [CrossRef]
[PubMed]
68. Duque-Silva, A.; Robsky, K.; Flood, J.; Barry, P.M. Risk factors for central nervous system tuberculosis. Paediatrics 2015, 136,
e1276–e1284. [CrossRef]
69. Fontanilla, J.M.; Barnes, A.; van Reyn, C.F. Correct diagnosis, and management of peripherals tuberculosis lymphadenitis. Clin.
Infect. Dis. 2011, 53, 555–562. [CrossRef] [PubMed]
70. Pattamapaspong, N.; Muttarak, M.; Sivasomboon, C. Tuberculosis Arthritis and Tenosynovitis. In Seminars in Musculoskeletal
Radiology; Thieme Medical Publishers©: New York, NY, USA, 2011; Volume 15, pp. 459–469.
71. Colmenero, J.D.; Ruiz-Mesa, J.D.; Sanjuan-Jimenez, R.; Sobrino, B.; Morata, P. Establishing the diagnosis of tuberculous vertebral
osteomyelitis. Eur. Spine J. 2013, 22, 579–586. [CrossRef] [PubMed]
Microorganisms 2023, 11, 1722 15 of 16
72. Duicu, C.; Marginean, O.; Kiss, E.; L’orinczi, L.; Banescu, C. Genitourinary tuberculosis in children-a diagnostic challenge. Rev.
Romana Med. Lab. 2013, 21, 301–309. [CrossRef]
73. Gibson, M.S.; Puckett, M.L.; Shelly, M.E. Renal tuberculosis. Radiographics 2004, 24, 251–256. [CrossRef] [PubMed]
74. Debi, U.; Ravisankar, V.; Prasad, K.K.; Sinha, S.K.; Sharma, A.K. Abdominal tuberculosis of the gastrointestinal tract: Revisited.
World J. Gastroenterol. WJG 2014, 20, 14831. [CrossRef] [PubMed]
75. Soeroso, N.N.; Harina, E.G.; Yosi, A. A very rare case of scrofuloderma with multiple cervical lymphadenitis tuberculosis. Respir.
Med. Case Rep. 2019, 27, 100842. [CrossRef] [PubMed]
76. Huebner, R.E.; Schein, M.F.; Bass, J.B., Jr. The tuberculin skin test. Clin. Infect. Dis. 1993, 17, 968–975. [CrossRef] [PubMed]
77. Watkins, R.E.; Brennan, R.; Plant, A.J. Tuberculin Reactivity and the Risk of Tuberculosis: A Review. Int. J. Tuberc. Lung Dis. 2000,
4, 895–903.
78. Seddon, J.A.; Paton, J.; Nademi, Z.; Keane, D.; Williams, B.; Williams, A.; Welch, S.B.; Liebeschutz, S.; Riddell, A.; Bernatoniene, J.;
et al. The impact of BCG vaccination on tuberculin skin test responses in children is age dependent: Evidence to be considered
when screening children for tuberculosis infection. Thorax 2016, 71, 932–939. [CrossRef]
79. Ruhwald, M.; Aggerbeck, H.; Gallardo, R.V.; Hoff, S.T.; Villate, J.I.; Borregaard, B.; Martinez, J.A.; Kromann, I.; Penas, A.; Anibarro,
L.L.; et al. Safety and efficacy of the C-Tb skin test to diagnose Mycobacterium tuberculosis infection, compared with an interferon
γ release assay and the tuberculin skin test: A phase 3, double-blind, randomised, controlled trial. Lancet Respir. Med. 2017, 5,
259–268. [CrossRef]
80. Aggerbeck, H.; Ruhwald, M.; Hoff, S.T.; Borregaard, B.; Hellstrom, E.; Malahleha, M.; Siebert, M.; Gani, M.; Seopela, V.; Diacon,
A.; et al. C-Tb skin test to diagnose Mycobacterium tuberculosis infection in children and HIV-infected adults: A phase 3 trial.
PLoS ONE 2018, 13, e0204554. [CrossRef]
81. Pai, M.; Denkinger, C.M.; Kik, S.V.; Rangaka, M.X.; Zwerling, A.; Oxlade, O.; Metcalfe, J.Z.; Cattamanchi, A.; Dowdy, D.W.; Dheda,
K.; et al. Gamma interferon release assays for detection of Mycobacterium tuberculosis infection. Clin. Microbiol. Rev. 2014, 27, 3–20.
[CrossRef]
82. Goletti, D.; Delogu, G.; Matteelli, A.; Migliori, G.B. The role of IGRA in the diagnosis of tuberculosis infection, differentiating
from active tuberculosis, and decision making for initiating treatment or preventive therapy of tuberculosis infection. Int. J. Infect.
Dis. 2022, 124, S12–S19. [CrossRef]
83. Hamada, Y.; Cirillo, D.M.; Matteelli, A.; Penn-Nicholson, A.; Rangaka, M.X.; Ruhwald, M. Tests for tuberculosis infection:
Landscape analysis. Eur. Respir. J. 2021, 58, 2100167. [CrossRef] [PubMed]
84. Zhang, X.; Meng, Q.; Miao, R.; Huang, P. The diagnostic value of T cell spot test and adenosine deaminase in pleural effusion for
tuberculous pleurisy: A systematic review and meta-analysis. Tuberculosis 2022, 135, 102223. [CrossRef] [PubMed]
85. Wen, A.; Leng, E.L.; Liu, S.M.; Zhou, Y.L.; Cao, W.F.; Yao, D.Y.; Hu, F. Diagnostic Accuracy of Interferon-Gamma Release Assays
for Tuberculous Meningitis: A Systematic Review and Meta-Analysis. Front. Cell. Infect. Microbiol. 2022, 12, 788692. [CrossRef]
[PubMed]
86. Lombardi, G.; Petrucci, R.; Corsini, I.; Bacchi Reggiani, M.L.; Visciotti, F.; Bernardi, F.; Landini, M.P.; Cazzato, S.; Dal Monte, P.
Quantitative Analysis of Gamma Interferon Release Assay Response in Children with Latent and Active Tuberculosis. J. Clin.
Microbiol. 2018, 56, e01360-17. [CrossRef] [PubMed]
87. Silveira, M.B.V.; Ferrarini, M.A.G.; Viana, P.O.; Succi, R.C.; Terreri, M.T.; Costa-Carvalho, B.; Carlesse, F.; de Moraes-Pinto, M.I.
Contribution of the interferon-gamma release assay to tuberculosis diagnosis in children and adolescents. Int. J. Tuberc. Lung Dis.
2018, 22, 1172–1178. [CrossRef] [PubMed]
88. Kay, A.W.; Islam, S.M.; Wendorf, K.; Westenhouse, J.; Barry, P.M. Interferon-γ Release Assay Performance for Tuberculosis in
Childhood. Pediatrics 2018, 141, e20173918. [CrossRef]
89. Gutiérrez-González, L.H.; Juárez, E.; Carranza, C.; Carreto-Binaghi, L.E.; Alejandre, A.; Cabello-Gutiérrrez, C.; Gonzalez, Y.
Immunological Aspects of Diagnosis and Management of Childhood Tuberculosis. Infect. Drug Resist. 2021, 14, 929. [CrossRef]
90. Atherton, R.R.; Cresswell, F.V.; Ellis, J.; Kitaka, S.B.; Boulware, D.R. Xpert MTB/RIF Ultra for Tuberculosis Testing in Children: A
Mini-Review and Commentary. Front. Pediatr. 2019, 7, 34. [CrossRef]
91. Rindi, L. Rapid Molecular Diagnosis of Extra-Pulmonary Tuberculosis by Xpert/RIF Ultra. Front. Microbiol. 2022, 13, 817661.
[CrossRef]
92. Pillay, S.; Steingart, K.R.; Davies, G.R.; Chaplin, M.; De Vos, M.; Schumacher, S.G.; Warren, R.; Theron, G. Xpert MTB/XDR for
detection of pulmonary tuberculosis and resistance to isoniazid, fluoroquinolones, ethionamide, and amikacin. Cochrane Database
Syst. Rev. 2022, 5, CD014841.
93. Nicol, M.P.; Schumacher, S.G.; Workman, L.; Broger, T.; Baard, C.; Prins, M.; Bateman, L.; du Toit, E.; van Heerden, J.; Szekely,
R.; et al. Accuracy of a Novel Urine Test, Fujifilm SILVAMP Tuberculosis Lipoarabinomannan, for the Diagnosis of Pulmonary
Tuberculosis in Children. Clin. Infect. Dis. 2021, 72, e280–e288. [CrossRef] [PubMed]
94. Eamranond, P.; Jaramillo, E. Tuberculosis in children: Reassessing the need for improved diagnosis in global control strategies.
Int. J. Tuberc. Lung Dis. 2001, 5, 594–603. [PubMed]
95. Vonasek, B.; Ness, T.; Takwoingi, Y.; Kay, A.W.; van Wyk, S.S.; Ouellette, L.; Marais, B.J.; Steingart, K.R.; Mandalakas, A.M.
Screening tests for active pulmonary tuberculosis in children. Cochrane Database Syst. Rev. 2021, 6, CD013693.
96. Vaezipour, N.; Fritschi, N.; Brasier, N.; Bélard, S.; Domínguez, J.; Tebruegge, M.; Portevin, D.; Ritz, N. Towards Accurate
Point-of-Care Tests for Tuberculosis in Children. Pathogens 2022, 11, 327. [CrossRef] [PubMed]
Microorganisms 2023, 11, 1722 16 of 16
97. Song, R.; Click, E.S.; McCarthy, K.D.; Heilig, C.M.; Mchembere, W.; Smith, J.P.; Fajans, M.; Musau, S.K.; Okeyo, E.; Okumu, A.;
et al. Sensitive and Feasible Specimen Collection and Testing Strategies for Diagnosing Tuberculosis in Young Children. JAMA
Pediatr. 2021, 175, e206069. [CrossRef]
98. Nicol, M.P.; Zar, H.J. New specimens and laboratory diagnostics for childhood pulmonary TB: Progress and prospects. Paediatr.
Respir. Rev. 2011, 12, 16–21. [CrossRef] [PubMed]
99. Jain, S.K.; Andronikou, S.; Goussard, P.; Antani, S.; Gomez-Pastrana, D.; Delacourt, C.; Starke, J.R.; Ordonez, A.A.; Jean-Philippe,
P.; Browning, R.S.; et al. Advanced imaging tools for childhood tuberculosis: Potential applications and research needs. Lancet
Infect. Dis. 2020, 20, e289–e297. [CrossRef]
100. Morello, R.; De Rose, C.; Ferrari, V.; Valentini, P.; Musolino, A.M.; Biasucci, D.G.; Vetrugno, L.; Buonsenso, D. Utility and Limits of
Lung Ultrasound in Childhood Pulmonary Tuberculosis: Lessons from a Case Series and Literature Review. Clin. Med. 2022,
11, 5714. [CrossRef]
101. Andronikou, S.; van der Merwe, D.J.; Goussard, P.; Gie, R.P.; Tomazos, N. Usefulness of lateral radiographs for detecting
tuberculous lymphadenopathy in children –confirmation using sagittal CT reconstruction with multiplanar cross-referencing. S.
Afr. J. Rad. 2012, 16, 87–92. [CrossRef]
102. Andronikou, S.; Lucas, S.; Zouvani, A.; Goussard, P. A proposed CT classification of progressive lung parenchymal injury
complicating pediatric lymphobronchial tuberculosis: From reversible to irreversible lung injury. Pediatr. Pulmonol. 2021, 56,
3657–3663. [CrossRef]
103. Sodhi, K.S.; Ciet, P.; Vasanawala, S.; Biederer, J. Practical protocol for lung magnetic resonance imaging and common clinical
indications. Pediatr. Radiol. 2021, 26, 1–17. [CrossRef] [PubMed]
104. Pillay, T.; Andronikou, S.; Zar, H.J. Chest imaging in paediatric pulmonary TB. Paediatr. Respir. Rev. 2020, 36, 65–72. [CrossRef]
[PubMed]
105. Cameron, L.H.; Cruz, A.T. Childhood tuberculosis. Curr. Opin. Infect. Dis. 2022, 35, 477–483. [CrossRef] [PubMed]
106. Shakoor, S.; Mir, F. Updates in Pediatric Tuberculosis in International Settings. Pediatr. Clin. N. Am. 2022, 69, 19–45. [CrossRef]
107. Jung, Y.E.G.; Schluger, N.W. Advances in the diagnosis and treatment of latent tuberculosis infection. Curr. Opin. Infect. Dis. 2020,
33, 66–172. [CrossRef]
108. Oh, C.E.; Menzies, D. Four months of rifampicin monotherapy for latent tuberculosis infection in children. Clin. Exp. Pediatr.
2021, 65, 214–221. [CrossRef]
109. Turkova, A.; Wills, G.H.; Wobudeya, E.; Chabala, C.; Palmer, M.; Kinikar, A.; Hissar, S.; Choo, L.; Musoke, P.; Mulenga, V.; et al.
SHINE Trial Team. Shorter Treatment for Nonsevere Tuberculosis in African and Indian Children. N. Engl. J. Med. 2022, 386,
911–922. [CrossRef]
110. Sulis, G.; Pai, M. Isoniazid-resistant tuberculosis: A problem we can no longer ignore. PLoS Med. 2020, 17, e1003023. [CrossRef]
111. Sharling, L.; Marks, S.M.; Goodman, M.; Chorba, T.; Mase, S. Rifampin-resistant Tuberculosis in the United States, 1998–2014.
Clin. Infect. Dis. 2020, 70, 1596–1605. [CrossRef]
112. Seddon, J.A.; Johnson, S.; Palmer, M.; van der Zalm, M.M.; Lopez-Varela, E.; Hughes, J.; Schaaf, H.S. Multidrug-resistant
tuberculosis in children and adolescents: Current strategies for prevention and treatment. Expert Rev. Respir. Med. 2021, 15,
221–237. [CrossRef]
113. Bossù, G.; Autore, G.; Bernardi, L.; Buonsenso, D.; Migliori, G.B.; Esposito, S. Treatment options for children with multi-drug
resistant tuberculosis. Expert Rev. Clin. Pharmacol. 2023, 16, 5–15. [CrossRef] [PubMed]
114. Pecora, F.; Dal Canto, G.; Veronese, P.; Esposito, S. Treatment of Multidrug-Resistant and Extensively Drug-Resistant Tuberculosis
in Children: The Role of Bedaquiline and Delamanid. Microorganisms 2021, 9, 1074. [CrossRef]
115. Ndjeka, N.; Campbell, J.R.; Meintjes, G.; Maartens, G.; Schaaf, H.S.; Hughes, J.; Padanilam, X.; Reuter, A.; Romero, R.; Ismail,
F.; et al. Treatment outcomes months after initiating short, all-oral bedaquiline-containing or injectable-containing rifampicin-
resistant tuberculosis treatment regimens in South Africa: A retrospective cohort study. Lancet Infect. Dis. 2022, 22, 1042–1051.
[CrossRef] [PubMed]
116. Ghosh, S.; Breitscheidel, L.; Lazarevic, N.; Martin, A.; Hafkin, J.; Hittel, N. Compassionate use of delamanid in adults and children
for drug-resistant tuberculosis: 5-year update. Eur. Respir. J. 2021, 57, 2002483. [CrossRef]
117. Lange, C.; Aaby, P.; Behr, M.A.; Donald, P.R.; Kaufmann, S.H.E.; Netea, M.G.; Mandalakas, A.M. 100 years of Mycobacterium
bovis bacille Calmette-Guérin. Lancet Infect. Dis. 2022, 22, e2–e12. [CrossRef] [PubMed]
118. Stockdale, L.; Fletcher, H. The Future of Vaccines for Tuberculosis. Clin. Chest Med. 2019, 40, 849–856. [CrossRef] [PubMed]
119. Cranmer, L.M.; Cotton, M.F.; Day, C.L.; Nemes, E. What’s Old and New in Tuberculosis Vaccines for Children. J. Pediatr. Infect.
Dis. Soc. 2022, 11 (Suppl. S3), S110–S116. [CrossRef] [PubMed]
120. Rangchaikul, P.; Ahn, P.; Nguyen, M.; Zhong, V.; Venketaraman, V. Review of Pediatric Tuberculosis in the Aftermath of COVID-19.
Clin. Pract. 2022, 12, 738–754. [CrossRef]
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual
author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to
people or property resulting from any ideas, methods, instructions or products referred to in the content.