Fbrio 02 1322165 1
Fbrio 02 1322165 1
Fbrio 02 1322165 1
KEYWORDS
Placenta specimen collection: At the time of delivery, the extractions. The 16S rRNA gene sequences were processed with the
placenta was placed in a sterile container and immediately DADA2 pipeline to generate amplicon sequence variants (ASVs)
handed off to trained study personnel who wore facial masks and that represent the lowest taxonomy unit in 16S rRNA gene
used sterile gloves, scalpel, and tissue forceps (Supplementary sequencing. Data processing included paired-end reads merging,
Figure 2). Two 1-cm × 1-cm × 1-cm cuboidal sections were denoising, identification and removal of chimeric sequences, and
circumferentially excised under the surface area of the placenta assigned sequences to bacterial taxonomies. Sequences detected in
from specified areas (chorionic plate to basal plate); one area any negative control were removed from all samples. Bacterial
was located 4 cm proximal to cord insertion and one area taxonomic identification of ASVs was done using the RDP
was located 4 cm from the placental edge site (Faul et al., 2007; Bayesian classifier against the Silva nr_v119 taxonomy database
Aagaard et al., 2014). The specimens were stored at −80°C for (Wang et al., 2007; Quast et al., 2012). Sequences that were
microbiome assessment. unidentified at the domain level and those identified as
Oral cavity specimen collection. All patients were evaluated for mitochondria were also removed. We employed rigorous
the presence or absence of PD by a trained periodontist. The dental procedures to remove potential placenta microbiome
exam was a full mouth periodontal examination, with positioning of contamination from various sources as illustrated in
a periodontal probe parallel to the long axis of the tooth at each site Supplementary Figure 3.
(Chapple et al., 2018). The exam was performed on postpartum day
1 (Supplementary Figure 2). Measurements were taken at six sites
around each tooth, namely, mesiobuccal, midbuccal, distobuccal, Analysis of demographic and clinical data
mesiolingual, midlingual, and distolingual on postpartum day 1
(Eke et al., 2018). The dental provider was blinded to all sample Descriptive statistics were used for demographic and clinical
groups to decrease the risk of selection bias. The following information. We first summarized women by PD and PE status for
parameters were evaluated: periodontal probing depth (PPD), continuous variables using mean and standard deviation;
bleeding on probing (Bop), Recession—measured (when present) categorical variables were analyzed using frequencies and
from the cement–enamel junction (CEJ) to free gingival margin, percentages (Table 1). The differences between the groups were
and clinical attachment loss (CAL) (Lang et al., 1990). tested using two-sample t-tests for continuous variables after proper
PD was defined as the dental exam finding ≥2 non-adjacent transformation and Fisher’s exact tests for categorical variables. The
interproximal sites with CAL ≥3 mm, and ≥2 non-adjacent prevalence of PD between women with and without preeclampsia
interproximal sites with PPD ≥ 4 mm, or ≥1 site with PPD ≥5 was then determined by Chi-square testing. A logistic regression
mm (Eke et al., 2018). For the purpose of this study, severe model was fitted to evaluate the associations between PE and PD,
periodontitis was defined as ≥2 interproximal sites with CAL ≥6 adjusting for age and smoking variables (Table 2).
mm and ≥1 interproximal site with PPD ≥5 mm. Non-severe
periodontitis was categorized into moderate (≥2 interproximal
sites with CAL ≥4 mm or ≥2 sites with PPD ≥5 mm) and mild Statistical analysis of placenta and
≥2 interproximal sites with CAL ≥3 mm and ≥2 interproximal sites oral microbiome
PPD ≥4 mm or ≥1 site with PPD ≥5 mm. Subgingival dental plaque
samples were collected by swiping the tooth surface with a dental Descriptive analysis of the placenta microbiome includes
explorer, and were placed in DNA Genotek media and stored at prevalence and relative abundance of the placenta microbiome in
−80°C until sequencing. each group. Prevalence refers to the proportion of participants who
have a given taxon. Data in two placenta sites were combined to
represent placenta microbiome for a given patient. Kruskal–Wallis
DNA extraction, PCR amplification, and 16S test or Fisher’s exact test and Wilcox on sum rank test were used to
rRNA gene sequencing test differences of the prevalence and relative abundance of the
placenta microbiome across groups, respectively. Permutational
To determine the microbiome profile in placenta and multivariate analysis of variance (PERMANOVA) was performed
subgingival plaque, we performed V4 regions of 16S rRNA gene to evaluate the global microbiome difference between two groups
sequencing (Maas and GitHub: Bioinformatics, [[NoYear]]). In after accounting for potential confounding variables including age,
brief, a maximum of 0.25 g of placenta and 200 mL of subgingival ethnicity, smoking status, and history of PE (Kelly et al., 2015).
samples were used for DNA extraction using a Qiagen DNA mini Wilcox on sum rank testing and DESeq2 were performed to identify
kit for tissue and blood, according to the manufacturer’s protocol differential bacteria between groups (Corcoll et al., 2017). A logistic
(The Human Microbiome Project Consortium, 2012). Genomic regression model was used to determine the risk of oral microbiome
DNAs were amplified using primers targeting the V4 region of the in the development of PE. p-values from multiple comparisons were
16S rRNA gene, followed by 2× 250-bp paired-end sequencing adjusted using the false discovery approach. Adjusted p-value <0.05
using the Illumina MiSeq sequencing platform. To control potential was considered as statistically significant. All above statistical
microbiome contaminations, negative controls including extraction analyses of the microbiome were performed with R 3.3.2 (Vienna,
controls and operation room controls were included for all sample Austria) software.
Ethnicity 0.712
Gestational age at the time of delivery/enrollment (weeks) 35.84 ± 2.71 35.5 ± 3.5 38.14 ± 1.68 38.11 ± 1.37 0.008
Pre-pregnancy BMI 31.53 ± 4.4 30.4 ± 7.71 32.43 ± 7.79 32.28 ± 7.09 0.885
Preterm 0.073
Race 0.650
Smoking 0.291
Track the oral origin of the previous placenta microbiome studies (Eke et al., 2012; de Goffau
placenta microbiome et al., 2019). This yielded a final set of 23 ASVs from 10 genera
including Streptococcus, Haemophilus, Veillonella, Fusobacterium,
Ninety-six out of 99 placental samples from 54 patients were Neisseria, Granulicatella, Gemella, Actinomyces, Campylobacter,
successfully sequenced, resulting in 2,241 ASVs. DNA extraction and Leptotrichia in placenta. The majority of these microbiota are
and procedure room control accounted for a large proportion of well-known PD-associated bacteria. Streptococcus was the most
sequenced reads of placenta (81.7%). After contamination removals prevalent bacteria in placenta, accounting for 27.7% of patients in
from DNA extraction controls and procedure room controls, 2,140 our cohort (13/47 = 27.7%), with the rest of nine genera each
ASVs were left (Supplementary Figure 3). accounting for 2%–8% of total patients (Figure 1A).
To address the potential microbial contamination during
delivery, difference in placenta microbiome between cesarean and
vaginal delivery were evaluated. The microbiome in placenta after The placenta microbiome differs by PD
removing extraction and procedure room controls was significantly and/or PE status
different between cesarean and vaginal delivery by PERMANOVA (p
< 0.05) (Supplementary Figure 4) suggesting that delivery mode We analyzed the placenta microbiome in patients with and
contributes to the microbiota detected in placenta. Wilcox on without PE (PE+ and PE−) and four subgroups: PE+/PD+, PE+PD
sum rank test showed that vagina-related microbiome represented −, PE−/PD+, and PE−/PD−. We did not find overall difference in
by Lactobacillus, Prevotella, Gardnerella, and Megasphaera and alpha and beta diversity of the microbiome detected in the placenta
common stool microbiota represented by Bacteroides and based on PE and PD status (Supplementary Figure 5). Among 10
Faecalibacterium were significantly higher among vaginal deliveries. genera identified in placenta, 7 genera, namely, Veillonella,
Skin-related bacteria Bacilli were significantly higher in women who Fusobacterium, Haemophilus, Granulicatella, Streptococcus,
had cesarean deliveries. In total, ASVs from 67 genera noted to be Gemella, and Neisseria, were present in higher proportion in the
different between delivery modes were removed from placenta PE+ group compared to the PE− group. However, none of the
microbiome, resulting in 1,482 ASVs in 96 placental samples. individual genus showed statistical difference in prevalence or
Next, we filtered the placental microbiota by keeping ASVs abundance among PE+ and PE− groups or the four subgroups.
identified in oral samples and with >1% of averaged abundance in This is likely due to different patients having different bacterial
oral samples (Supplementary Figure 4). The relative abundance of composition in their placenta microbiome. However, because
1% was considered a biologically reliable or relevant cutoff for different bacteria may confer similar function and the identified
microbiome research in low biomass samples and was used for placenta microbiome were all associated with PD, we combined the
A B
C D
FIGURE 1
Prevalence of the placenta microbiome in different groups. Ten bacterial genera are identified in placenta after rigorous bioinformatic processing.
Proportions of women who have a given detectable placental microbiota are illustrated by barplots (A). Prevalence of patients with and without
placental microbiota among PE+ vs. PE− women (p = 0.018, Fisher exact test) (B). Prevalence of patients with and without placenta microbiota
among four subgroups (p = 0.035, Fisher exact test) (C). The total relative abundance of placenta microbiome across four groups, with PE−PD−
being significantly lower than PE+PD+ (p = 0.024, Wilcox on test) (D).
prevalence or abundance of the seven bacteria genera and tested the (Supplementary Figures 7E–G). Differential taxa analysis by
differences of combined microbiome among groups. Interestingly, DESeq2 showed that Haemophilus (p = 0.015), Veillonella (p =
the prevalence of combined placenta microbiome in PE+ patients 0.020), and Fusobacterium (p = 0.046) had higher relative
(14/26 = 53.84%) was significantly higher than that of PE− patients abundance in the PE+ than in the PE− groups (Figure 2A). The
(4/21 = 19.04%) (p = 0.018) (Figure 1B). The combined placenta increase of Haemophilus in PE+ was confirmed by LefSe analysis
microbiome showed the highest prevalence in the PE+/PD+ group (Supplementary Figure 7H). Subgroup analysis showed that the
(10/17 = 58.82%), and it was significantly higher than the PE−/PD− relative abundance of Haemophilus and Fusobacterium was
group (3/15 = 20%) (p = 0.035). (Figure 1C). The abundance of significantly higher in PE+PD+ than in PE−PD+ patients
combined placenta microbiome showed a significant difference in (Figure 2B), indicating that these two bacteria may be specific to
the PE−/PD− and PE+/PD+ groups (p = 0.024) (Figure 1D). PE. Importantly, logistic regression analysis showed that
Together, these data support our hypothesis that PD-related Haemophilus but not Veillonella and Fusobacterium in
bacteria are high in prevalence and abundance in PE patients. subgingivae was associated with increased risk of PE (OR = 2.11,
95% CI = 1.11–4.52, p = 0.032). This raises the possibility that the
oral microbiome may potentially serve as a marker for PE.
The subgingival microbiome differs by
PE status
Associations between systemic
Thirty-five out of 48 oral samples were successfully sequenced inflammation and placenta microbiome
and included in the analysis. After data processing, we totally
yielded 2,087,144 reads, with a median of 51,382 and an IQR of The blood levels of CRP, LBP, TNF-a, and IL-6 showed no
64,570. As expected, Streptococcus was the most abundant genus in statistical difference in patients with or without PE or PD
subgingival samples (Supplementary Figure 6). Alpha diversity (Supplementary Tables 2, 3) even after stratification for term
analysis did not find differences in richness and Shannon deliveries with Kruskal–Wallis. However, IL-8 levels were
diversity between the PE+ and PE− groups and subgroups significantly higher in the PE+/PD+ group compared to the PE
(Supplementary Figures 7A–D). PERMANOVA analysis showed +/PD− group (p = 0.26, Figure 3A). To examine the relationship
that the global subgingival microbiome profile had a marginally between proinflammatory cytokine and placenta microbiome, we
significant difference between the PE+ and PE− groups (p = 0.09) compared cytokine levels in patients who had a detected and non-
and between the PE+PD+ and PE−PD− groups (p = 0.07) detected placenta microbiome. Interestingly, we found that there
FIGURE 2
Relative abundance of three microbiota in subgingival samples that are significantly different between PE+ and PE− patients (A) and among four
subgroups (B).
A B
FIGURE 3
Comparison of inflammatory cytokines in four subgroups and in patients with and without detectable placental microbiota. IL-8 levels in blood are
significantly higher in PE+/PD+ patients than in PE+/PD− patients (p = 0.028, Wilcox on sum rank) (A). IL-6 levels in blood are significantly higher in
patients with detectable placenta microbiota than those without (p = 0.028, Wilcox on sum rank test) (B).
were elevated levels of blood IL-6 in placentas with detected to confirm the exact origin of the bacteria. Despite identification of
microbiome than placentas without detected microbiome (p = the potential oral origin of placenta microbiome, our study does not
0.028, Figure 3B), indicating that the presence of placenta exclude the possibility of other sources of the placenta microbiome
microbiome is associated with elevated systemic inflammation. such as the vagina and the gut. In fact, we found a common gut and
vaginal microbiome in the placenta of patients who had a vaginal
delivery, as compared to those who underwent a cesarean delivery,
Discussion suggesting that the microbiome from multiple origins may contribute
to the placenta microbiome in PE.
Overall, the placenta microbiome continues to present challenges Fusobacterium was previously found to be prevalent in the
in characterization due to the low microbial biomass and the placenta of PE patients by targeted PCR amplification (Barak et al.,
potential for DNA contamination through sampling techniques, 2007; Chen et al., 2020). Our results confirmed this finding and
reagents, and mode of delivery. Although recent studies with additionally revealed other PE-associated placenta microbiome
rigorous decontamination approaches do not support the presence through 16S sequencing. The underlying reasons why these
of placental microbiota, transient bacteria in circulation in pregnancy specific taxa can disseminate to placenta merit future
may lead to the detection of a small number of oral bacteria (de investigation. It is possible that both host factors and microbiota
Goffau et al., 2019). By simultaneously profiling the oral and placenta can contribute to microbiome seeding in placenta since hormonal
microbiome in the same pregnant women, we identified oral-origin changes during pregnancy in women and the invading capacity of
bacteria in placenta from more than half of the patients with PE, FadA adhesin from F. nucleatum (Richardson et al., 2020) can
compared to less than 20% of patients without PE. The presence of increase endothelial permeability.
placenta microbiome was associated with increased systemic Although the relative abundance of Haemophilus, Veillonella,
inflammation in PE. High abundance of Haemophilus in the and Fusobacterium in the oral samples were significantly higher in
subgingivae was associated with increased risk of PE. PE+ patients than in PE− patients, they were similar between PD+
PE has long been considered as a placental disorder. Despite the and PD− patients. This suggests that these oral bacteria are
lack of cohesive evidence of healthy placenta microbiome (Thies potential markers for PE independent of PD status. Interestingly,
et al., 2019; Sterpu et al., 2021), there is a consensus that the when analyzing the oral microbiome, we found that Haemophilus
microbiome may be present in placenta in maternal or fetal but not Veillonella and Fusobacterium in subgingivae was a risk
diseases. After rigorous potential contamination removal, we found factor for PE. A prior study showed that Haemophilus was
that the placenta microbiome was associated with PE. Sequencing the important in early biofilm formation but was not necessarily
oral and placenta microbiome in parallel in our study is advantageous more prominent in caries (Schoilew et al., 2019). This suggests
compared to any previous studies that only focused on either placenta that, in addition to bacteria associated with caries, non-caries-
or the oral microbiome. In addition, among the seven placenta- associated microbiome may also be important for PE. Since oral
associated microbiota, the relative abundance of Haemophilus, samples were collected when PE was diagnosed, we could not
Veillonella, and Fusobacterium was significantly higher in the oral determine whether the increased abundance of these oral bacteria
samples of PE+ patients than PE− patients, further supporting an oral is a consequence or a driver of PE.
origin of these placenta-associated bacteria. Whole genome shotgun Previous studies have shown that proinflammatory cytokines
sequencing with higher-resolution taxonomic classification is needed produced in pregnancy may be responsible for the exacerbated
endothelial damage seen in women who develop PE in pregnancy informed consent for participation in this study was provided by
(Delassus et al., 1994; Chaouat et al., 1995). However, our study did the participants’ legal guardians/next of kin.
not observe any statistical difference in circulating cytokines in either
of the two groups (PE and PD) even after removing the potential
confounder, preterm delivery, and evaluating only the term deliveries. Author contributions
However, subgroup analysis found that within the PE+ group, PE
+/PD+ patients had higher IL-8 levels than PE+/PD− patients. We SC: Conceptualization, Data curation, Investigation, Methodology,
showed that detectable microbiota in placenta was associated with Resources, Visualization, Writing – original draft, Writing – review &
increased circulating IL-6 levels, suggesting that the presence of editing. AB: Conceptualization, Investigation, Supervision, Validation,
placenta microbiome may increase proinflammatory response. Writing – review & editing. ST: Data curation, Investigation,
This study has several strengths. Special attention was given to Methodology, Supervision, Writing – review & editing. EH:
the protocol development for collection of placenta specimens, and a Supervision, Writing – review & editing. AH: Data curation,
rigorous bioinformatic pipeline was employed to decrease the risk of Investigation, Methodology, Writing – review & editing. CK: Data
contamination. This study is also one of the first studies to curation, Formal analysis, Methodology, Software, Writing – review &
investigate the origins of the placenta microbiome in women with editing. NB: Data curation, Investigation, Methodology, Writing –
PE and PD by comparing the bacterial taxonomic levels for multiple review & editing. HY: Data curation, Formal analysis, Investigation,
body sites. Prior to our study, this has not been investigated in detail. Methodology, Software, Writing – review & editing. HP: Data curation,
One major limitation of this study is the absence of vagina and Investigation, Methodology, Project administration, Supervision,
stool sampling collection, which restricts the analysis of the placental Writing – review & editing. QL: Data curation, Formal analysis,
microbial origins to only oral microbiota. Second, because the Investigation, Methodology, Writing – review & editing. KM: Data
placenta in the study was not subjected to removal of maternal curation, Formal analysis, Investigation, Methodology, Software,
blood, it is possible that the microbiota we identified in the placenta Validation, Writing – original draft. WC: Conceptualization,
represents the disseminating maternal microbiota. Rinsing maternal Investigation, Methodology, Supervision, Writing – original draft.
blood from placenta and inclusion of additional sample types such as YZ: Conceptualization, Data curation, Formal analysis, Investigation,
maternal blood and cord blood will provide more information on the Methodology, Project administration, Resources, Supervision,
placenta microbiota during PE. Third, prophylactic antibiotic use Validation, Writing – original draft, Writing – review & editing.
during cesarean section and group B Streptococcus infection in the
study may alter the oral or placental microbiome, which may
complicate the interpretation of the results. However, we found no Funding
statistical difference in PE+ and PE− participants in antibiotics usage.
Thus, results from group comparisons remain meaningful. In The author(s) declare that no financial support was received for
addition, our study is an association study, and we are not able to the research, authorship, and/or publication of this article.
show a causative link between the microbiome in women with PD
and/or PE. Nevertheless, our findings provided important evidence
that there exists higher prevalence and abundance of bacteria in the Conflict of interest
placenta of patients with PE compared to controls, and there is an
oral microbiota dysbiosis in PE. Future studies should include early The authors declare that the research was conducted in the
and multiple sampling time points through the whole pregnancy, absence of any commercial or financial relationships that could be
which allows one to determine whether there is a causal role of the construed as a potential conflict of interest.
oral microbiome in PE. If this is confirmed, oral microbiome, with
easy sampling in clinic, may be used as an alternative strategy to
predict or prevent PE. Publisher’s note
All claims expressed in this article are solely those of the authors
Data availability statement and do not necessarily represent those of their affiliated organizations,
or those of the publisher, the editors and the reviewers. Any product
The datasets presented in this study can be found on the NCBI that may be evaluated in this article, or claim that may be made by its
database with accession number: PRJNA1077338. manufacturer, is not guaranteed or endorsed by the publisher.
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