Art 6
Art 6
Art 6
Department of Fibres and Textile Processing Technology, Institute of Chemical Technology (University under Section-3 of UGC Act 1956), Matunga,
Mumbai 400019, India
ARTICLE INFO ABSTRACT
Article history: A series of novel dihydropyrimidin-2(1H)-ones derivatives was synthesized by using Rhizopus
Received January 11, 2012 Oryzae lipase biocatalyst in deep eutectic solvent. The reaction is characterized by high
Received in Revised form efficiency and selectivity, short reaction time, mild and environmentally friendly reaction
Feb 19, 2011 conditions. The yields were found to be significantly higher and reuse of both the lipase and
Accepted 2 March 2011 deep eutectic solvent was possible up to four consecutive cycles. The products are found to
Available online
exhibit appreciable in vitro antibacterial activity against Echerichia coli, Pseudomonas
2 March 2012
neumoniae and in vitro antifungal activity against Aspergillus niger and Candida albicans.
Keywords:
Biological activity
Rhizopus Oryzae
Biocatalyst
Deep Eutectic Solvent
Ionic Liquids © 2012 Growing Science Ltd. All rights reserved.
1. Introduction
Debache et al.8 investigated the use of triphenylphosphine as a Lewis base catalyst for the
synthesis of DHPMs derivatives. It has been also reported by using imidazole based ionic liquids
(ILs) such as water tolerant Lewis acid [bmim][FeCl4]9, [bmim]BF4 and [bmim]PF610.
Use of the ILs as a reaction medium for biocatalysis has attracted great attention in recent years,
as the processes are green and the ILs have several advantages compared to conventional reaction
media11-14. However, imidazole base ILs containing anions BF4- and PF6- are not environmentally
safe as they liberate hazardous HF gas and also their high costs and disposability problems make their
use limited15.
As an alternative approach to overcome these drawbacks, we used deep eutectic solvent (DES)
which is nontoxic, cheap, easily available and also possesses biodegradability. The used DES was a
mixture of choline chloride and urea, resulting in a very large depression of freezing point. The
solvent and physical properties of DES are similar to ILs16. Both choline chloride and urea are
naturally occurring biocompatible compounds that are environmentally safe if released back into
nature as a choline or its DES17.
Biocatalysis is an efficient and green tool for modern organic synthesis due to its high selectivity
and mild conditions18-19. Biocatalytic promiscuities provide new tool for organic synthesis and thus
expand largely the applications of enzymes. The lipase from Rhizopus Oryzae as a biocatalyst is well
known in organic synthesis due to its easy availability, selectivity and stability20. Although it has
found applications in ester hydrolysis21, knoevenagel condensation22 and mannich reaction23, the
application in synthesis of DHPMs derivatives has not been well explored.
In the last two decades, chemists have paid much attention to the clean synthesis leading to
introduction of efficient and green methodology24. Earlier we have reported the synthesis of novel
styryl colorants22 and synthesis of trisubstituted alkenes25 by using lipase as a biocatalyst. In
continuation, we report herein for the first time environmentally-benign base catalyzed synthesis of
novel DHPMs using lipase biocatalyst in DES and their antimicrobial activity.
X HN NH
O O Lipase, DES
Ar-CHO + + Ar Me
R Me H2N NH2 55 °C
COR
The reaction of aromatic aldehydes 1a, ethyl acetoacetate 2a and urea 3a was selected as a model
reaction for optimizing the reaction parameters (Scheme 1) such as molar ratio, effects of solvents,
catalysts study, catalysts amount, and reusability. Base catalyzed Biginelli reaction has been shown to
be more effective in terms of reaction time, conversion and isolated yield compared to the acid
catalyzed reaction26-30. Synthesis of DHPMs derivatives by using base catalyst has not been well
explored. Therefore, we have employed base catalyzed synthesis of DHPMs derivatives.
B. N. Borse et al. / Current Chemistry Letters 1 (2012) 61
As shown in Table 1 (entries 1, 2) our attempt to perform the model reaction using conventional
catalyst such as K2CO3 and t-BuOK, yielded the product 4a in 65-79 % after reacting at 55 0C for 6-7
h. The model reaction using biocatalyst such as proline, L-histidine and lipase afforded the product 4a
in 80-95% yields after reacting at 55 0C for 4-5 h. The catalytic activity of the lipase biocatalyst was
found to be more than that of the corresponding biocatalyst (Table 1, entries 3, 4, 5). Lipase
biocatalysts were used in different organic transformation without need of additional coenzyme
because of their high efficiency and selectivity20, 22. Different organic solvents were also screened to
see their efficiency in the reaction. As shown in Table 1 (entries 5-9) it seems that the reaction
proceeds better in DES solvents than water, methanol, dioxane, and DMF. In the absence of the
catalyst, it affords the desired product 4a in 20 % yield after reacting at 55 0C for 7.5 h (Table 1,
entry 10).
Table 1. Effect of catalysts and solvents on product yield 4a
Entrya Catalyst (5% w/w) Solvent Time(h) Yield (%)b
1 K 2CO3 DES 7 65
2 t-BuOK DES 6 79
3 Proline DES 5 80
4 L-Histidine DES 5 88
5 Lipase DES 4 95
6 Lipase Water 8 50
7 Lipase Methanol 5 80
8 Lipase Dioxane 6 72
9 Lipase DMF 5.5 78
10 No Catalyst DES 7.5 20
Reaction Condition: aAll reactions were carried out with aldehyde 1a (2 mmol), ethyl acetoacetate (2.1
mmol), urea (2.2 mmol), catalyst (0.019g), solvent (3 ml), Temperature = 55 0C, bIsolated yields.
Use of Rhizopus oryzae lipase in DES reduced the reaction time to more than half coupled with
the yield of the product as high as 95 % (Table 1, entry 5). For further reaction optimization, the
lipase biocatalyst was used. To optimize the amount of the catalyst, the reaction was performed with
different quantity of the lipase, and we observed that 5% w/w of lipase with respect to the aldehyde
was found to be optimal (Table 2). Under the optimized conditions, various substituted aromatic
aldehydes 1a-g were reacted to obtain the corresponding products 4a-g (Table 3).
In all the synthesized compounds disappearance of aldehydic proton at around 9.8 δ in 1H-NMR and
C-H stretching frequency at around 2750 cm-1 in IR spectra gives the evidence of product formation.
Thiourea has shown excellent reactivity to synthesis of 3,4-dihydropyrimidin-2-(1H)thione, which is
also of much interest with respect to its biological activity6. In order to make the biocatalytic
processes economical at large scale, the recyclability of both lipase and DES has to be taken into
consideration.
Recycling experiments were conducted to find out the change in activity of the catalyst after the
reaction. During this study, lipase and DES were recycled up to four times. No significant decrease in
62
the yield of the product was observed during the first recycle, whereas it continuously declined up to
75 % at the end of fourth cycle as shown in Table 4.
Table 3. Synthesis of dihydropyrimidin-2(1H)-ones (DHPMs) derivatives
Urea/
Entrya Aldehyde AMG Product Time(h) Yield,%b
Thiourea
O
O O O O HN NH
a H H 3C O H2N NH2 4 95
H3CO H3CO O O
O S
H O O S HN NH
b H 3C O H2 N NH2 4 92
H3CO
H3CO O O
O O
H O O O HN NH
c H 3C H2N NH2 4 90
H3CO
H3CO O
O O
H O O O NH
HN
H 3C O H2N NH2
d N
6 82
O
O
N
O S
H O O S NH
HN
H 3C O H2 N NH2
e 6 81
N O
O
N
O O
H O O O HN NH
N H3 C O H2 N NH2
N O O
f 6 73
O
O H HN O
O N
H
O O
O O O O O HN NH HN NH
H H H3 C O
g H2 N NH2 6 78
N
(CH2) 6 O O N O O
(CH2)5CH3
Reaction Conditions: aAll reactions were carried out with aldehyde 1a-g (2 mmol), AMG 2a-b (2.1 mmol), urea/ thiourea
(2.2 mmol), Lipase (5% w/w with respect to aldehyde), DES (3 ml), Temperature (55 0C). bIsolated yields.
All these novel DHPMs derivatives were evaluated for in vitro antibacterial activity against
Echerichia coli, Pseudomonas neumoniae, Micrococcus and in vitro antifungal activity against
Aspergillus niger and Candida albicans. Appreciable in vitro activity against the tested strains was
exhibited by all the compounds. Minimal Inhibitory Concentrations (MIC) were determined by
means of standard serial dilution method and summarized in Table 5. In all the cases, purity of the
product was confirmed by elemental analysis. The structures of the pure products were confirmed by
FT-IR, 1H-NMR, 13C-NMR, elemental analysis and Mass spectral data.
A O A O O
Me + Me Me
N: H NH O
O N N + - -
B H H R1 B O
H R1 Ar R1
H
O O O O
O
1 2
A A
+
X N: NH
B O HN B O HN
X H2N NH2
NH2 OH O
O O H O O- O
HN OH
Ar Me Ar Me
Ar Me Ar Me
COR1 R1 O R1
O O R1
6 5 4
3
X
HN NH
X OH X
NH2 Ar H Me A
HN O COR1 HN NH N:
B O N
+ H
Ar Me A Ar Me
COR1 COR1 O
N:
B O N
H
7 8 9
O
O
O H2N
OH
N
Where, OH B= O R 1 = -CH 3, -OCH 2CH3
A= HN NH2
O- X= O,S
As shown in Scheme 2 plausible reaction mechanisms were proposed for lipase catalyzed reaction,
the condensation of the active methylene group and aromatic aldehyde gives intermediates (5) which
further reacts with urea or thiourea to give DHPMs (9).
64
3. Conclusions
Environmentally benign synthesis of novel DHPMs in DES with lipase as a biocatalyst has been
reported for the first time. It is a simple, convenient and effective method for the one pot synthesis of
DHPMs. The lipase in DES gave high isolated yield of the DHPMs in a shorter reaction time and
minimizes the use of harmful organic solvents and catalysts, which are the major environmental
issues in the pharmaceutical research. Lipase is a heterogeneous catalyst, easily recoverable by simple
filtration and reused in same reaction up to four cycles without major loss in its catalytic activity. All
the synthesized compounds showed antibacterial and antifungal activity.
Acknowledgements
The Authors B. N. Borse and V. S. Borude are thankful to University Grant Commission (UGC-
SAP programme) INDIA for financial assistance.
4. Experimental
Lipase from Rhizopus oryzae having activity 41.6 U/ mg was procured from Zytex India Pvt. Ltd.
All the solvents and chemicals were procured from S. D. Fine Chemicals (India) and were used
without further purification. The reactions were monitored by TLC using 0.25 mm E- Merck silica
gel 60 F254 precoated plates, which were visualized with UV light. FT-IR spectra were recorded on
8400S Fourier Transform Infrared Spectrophotometer Shimadzu. The 1H-NMR and 13C-NMR spectra
were recorded on 300 MHz and 100 MHz on Varian Mercury Plus Spectrometer, respectively.
Chemical shifts are expressed in δ ppm using TMS as an internal standard. Coupling constants are
given in Hz. The following abbreviations are used to indicate the multiplicity: s, singlet; d, doublet; t,
triplet; q, quartet; m, multiplet; bs, broad signal. Elemental analysis was done on Harieus Rapid
Analyzer. Mass spectral data were obtained with Micromass – Q– Tof (YA105) Spectrometer.
Once the reaction is over, since reaction mass is diluted with ethyl acetate, lipase was recovered
by filtration and DES was immiscible with ethyl acetate, it was easily separated. Lipase and DES was
dried under vacuum. The recovered lipase and DES was loaded in the same reactor, and the fresh
reactant aldehyde 1a (2 mmol), ethyl acetoacetate (2.1 mmol), and urea (2.2 mmol) were stirred at
550C for 4h to get final product (4a), the same procedure was repeated for consecutive recycling of
the catalyst.
B. N. Borse et al. / Current Chemistry Letters 1 (2012) 65
Medium
Isosensitest broth was used for this antimicrobial activity study. As recommended by NCCLS31,
Mueller Hinton medium was used for antimicrobial susceptibility testing, the most of the bacterial
strains show comparable results in isosensitest medium32, 33.
Ethyl-4-(6-methoxynaphthalen-2-yl)-6-methyl-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-
carboxylate Table 3, entry 4b:
FT-IR (neat, cm–1): 3298 (N-H), 2985 (C-H), 1736 (C=O), 1663 (C=C ), 1550(C=S), 1018(C-O ).
1
H-NMR (300 MHz, DMSO-d6, δ ppm): 1.10 (t, 3H), 1.21 (q, 2H), 2.32 (s, 3H), 3.85 (s, 3H), 5.28 (s, J
= 3.6 Hz, 1H), 7.12 (d, J = 2.5 Hz, 1H), 7.19 (d, J = 2.5 Hz, 1H), 7.28 (d, J = 2.5 Hz, 1H), 7.32 (d, J = 1.8
Hz, 1H), 7.36 (d, J = 6.9 Hz, 1H), 7.8 (d, J = 8.7 Hz, 1H), 9.85 ( s, 1H, -NH gr), 10.20 (s, 1H, -NHgr).
13
C-NMR (100 MHz, DMSO-d6, δ ppm): 14.05, 17.25, 54.33, 55.21, 59.59, 100.62, 105.79, 118.97,
124.90, 125.31, 127.39, 128.01, 129.47, 133.81, 138.54, 145.11, 157.44, 165.20, 174.10.
Anal. Calcd. for C19H20N2O3S: C, 64.02; H, 5.66; N, 7.86; S, 9.00. Found: C, 64.12; H, 5.68; N,
7.96; S, 9.18.
MS (EI) (m/z): 357.2 (M+).
5-acetyl-4-(6-methoxynaphthalen-2-yl)-6-methyl-3,4-dihydropyrimidin-2(1H)-one Table 3,
entry 4c:
FT-IR (neat, cm–1): 3290 (N-H), 1670 (C=O), 1610 (C=C), 1083 (C-O), 1031(C-O).
1
H-NMR (300 MHz, DMSO-d6, δ ppm): 2.10 (s, 3H), 2.36 (s, 3H), 3.83 (s, 3H), 5.45 (d, J = 3 Hz,
1H), 7.15 (d, J = 2.1 Hz, 1H), 7.28 (d, J = 1.8 Hz, 1H), 7.40 (d, J = 8.7 Hz, 1H), 7. 60 (s, 1H), 7.80
(d, J = 8.7 Hz, 2H), 7.90 (s, 1H), 9.25 (s, 1H);
13
C-NMR (100 MHz, DMSO-d6, δ ppm): 19.02, 30.35, 54.04, 55.18, 105.74, 109.41, 118.81, 124.55,
125.60, 127.39, 128.10, 129.46, 133.68, 139.28, 148.26, 152.14, 157.29, 194.48;
Anal. Calcd. for C18H18N2O3: C, 69.66; H, 5.85; N, 9.03. Found: C, 69.71; H, 5. 92; N, 9.27.
MS (EI) (m/z): 310.93 (M+).
Ethyl-4-(9-ethyl-9H-carbazol-3-yl)-6-methyl-2-oxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate
Table 3, entry 4d:
FT-IR (neat, cm–1): 3340 (NH), 2817 (C-H), 1651 (C=O), 1227, 1088 (C-O);
1
H-NMR (300 MHz, DMSO-d6, δ ppm): 1.10 (t, 3H), 1.30 (t, 3H), 2.42 (s, 3 H), 3.95 (q, 2H), 4.45
(q, 2H), 5.35 (d, J = 2.4 Hz, 1H), 7.20 (t, J = 7.6 Hz, 1H), 7.35-7.40 (dd, J = 8.4 Hz, 1.4 Hz, 2H),
7.54 (t, J = 6.9 Hz, 1 H), 7.58 (dd, J = 8.4 Hz, 1H), 8.02 (d, J = 8.7 Hz, 1H), 8.15 (d, J = 7.6 Hz, 1H),
9.20 ( S, 1H, -NH gr), 10.24 (S, 1H, -NHgr);
13
C-NMR (100 MHz, DMSO-d6, δ ppm): 13.70, 14.13, 17.86, 36.99, 54.51, 59.15, 99.93, 109.19, 109.21,
118.04, 118.74, 120.11, 121.65, 122.05, 124.36, 125.73, 135.73, 138.86, 139.84, 147.86, 152.11, 165.52;
Anal. Calcd. for C22H23N3O3: C, 70.01; H, 6.14; N, 11.13. Found: C, 70.12; H, 6.20; N, 11.33.
MS (EI) (m/z): 376.07 (M-).
Ethyl-4-(9-ethyl-9H-carbazol-3-yl)-6-methyl-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-
carboxylate Table 3, entry 4e:
FT-IR (neat, cm–1): 3180 (N-H), 2998 (C-H), 1705 (C=O), 1590 (C=S), 1100 (C-O);
1
H-NMR (300 MHz, DMSO-d6, δ ppm): 1.10 (t, 3H), 1.30 (t, 3H), 2.40 (s, 3 H), 4.00 (q, 2H), 4.45
(q, 2H), 5.38 (d, J = 3.3 Hz, 1H), 7.20 (t, J = 7.6 Hz, 1H), 7.33 (dd, J = 7.9 Hz, 2H), 7.45 (t, J = 7.6
Hz, 1H), 7.60 (dd, J = 8.4 Hz, 1.4 Hz, 1 H), 7.92 (d, J = 1.4 Hz 1H), 8.13 (d, J = 7.6 Hz, 1H), 9.70( S,
1H, -NH gr), 10.24 (S, 1H, -NHgr);
13
C-NMR (100 MHz, DMSO-d6, δ ppm): 13.71, 14.05, 17.25, 37.01, 54.62, 59.54, 101.304, 109.236,
109.385, 118.29, 118.85, 120.16, 121.73, 121.99, 124.46, 125.87, 134.38, 139.03, 139.88, 144.63,
165.32, 173.81;
Anal. Calcd. for C22H23N3O2S: C, 67.15; H, 5.89; N, 10.68; S, 8.15; Found: C, 67.12; H, 5. 97; N,
10.92; S, 8.39.
MS (EI) (m/z): 393.07 (M+).
Diethyl-4,4'-(4,4'-(phenylazanediyl)bis(4,1-phenylene))bis(6-methyl-2-oxo-1,2,3,4-
tetrahydropyrimidine-5-carboxylate) Table 3, entry 4f:
B. N. Borse et al. / Current Chemistry Letters 1 (2012) 67
FT-IR (neat, cm–1): 3466 (N-H), 2983 (C-H), 1738 (C=O), 1153 (C-O), 1042 (C-O);
1
H-NMR (300 MHz, DMSO-d6, δ ppm): 1.15-1.20 ( t, 6H), 2.25 (s, 6 H), 3.95-4.05 (q, 4H), 4.75 (s,
1H), 4.85 (s, 1H), 6.75 (d, J = 8.7 Hz, 4H), 7.05 (d, J = 8.4 Hz, 4H), 7.15 (dd, J = 7.3 Hz, 2H), 7.38
(t, J = 7.6 Hz, 1H), 7.65 (d, J = 8.7 Hz, 2H), 8.80 (s, 2H), 9.70 (s, 2H);
13
C-NMR (100 MHz, DMSO-d6, δ ppm): 14.18, 14.29, 18.30, 21.67, 58.81, 59.04, 59.04, 91.78,
101.62, 101.62, 117.51, 125.51, 125.51, 126.06, 126.06, 126.52, 126.52, 128.20, 128.20, 129.01,
129.01, 129.01, 130.02, 130.02, 131.28, 131.28, 143.12, 145.51, 145.60, 152.92, 154.23, 156.83,
166.93, 168.31;
Anal. Calcd. for C34H35N5O6 : C, 66.98; H, 5.79; N, 11.49; Found C, 66.57; H, 5.82; N, 11.82.
MS (EI) (m/z): 607.16 (M-).
Diethyl-4,4'-(4,4'-(hexylazanediyl)bis(4,1-phenylene))bis(6-methyl-2-oxo-1,2,3,4-
tetrahydropyrimidine-5-carboxylate) Table 3, entry 4g:
FT-IR (neat, cm–1): 2982 (C-H), 1738 (C=O), 1666 (C=C), 1042 (C-O);
1
H-NMR (300 MHz, DMSO-d6, δ ppm): 0.88 (t, 3H), 1.15 (t, 6H), 1.10-1.35 (m, 8H), 2.25 (s, 6H),
2.50 (t ,2H), 4.15 (q, 4 H), 4.75 (s, 2H), 6.65 (d, J = 8.4, 2H), 7.12 (d, J = 8.0 Hz, 2H), 7.26 (d, J =
8.4 Hz, 2H), 7.60 (d, 2H), 8.85 (s, 2H), 9.60 (s, 2 H);
13
C NMR (100 MHz, DMSO-d6, δ ppm): 13.83, 14.16, 14.27, 18.28, 21.67, 22.07, 25.84, 26.70,
29.08, 31.01, 51.79, 51.79, 58.80, 59.01, 91.70, 101.68, 112.77, 112.77, 125.67, 125.67, 126.69,
126.69, 129.23, 131.50, 142.88, 145.60, 146.36, 152.93, 154.23, 156.83, 166.92, 168.31, 189.82,
189.82;
Anal. Calcd. for C34H43N5O6: C, 66.1; H, 7.02; N, 11.34; Found C, 65.91; H, 6.97; N, 11.68.
MS (EI) (m/z): 617.19 (M+).
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