Chapter 6 Chemistry of Proteins (Compatibility Mode)

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GENERAL

BIOCHEMISTRY
BIOC 201

CHAPTER VI
Chemistry of Proteins
Objectives
 One objective of this chapter is
getting the student to understand
proteins chemistry and types.
 The chapter will detail the basic
classification of amino acids.
 To provide the student with hints
about the metabolic pathways of
proteins.
PROTEINS are:
polymers of amino acids
coded from genes
the work horses of biological systems
the key roles in constructing and
maintaining living cells
Protein types:
Enzymes
Hormones
Storage proteins
Transport proteins
Structural proteins
Protective proteins (antibodies)
Toxic proteins
Protein Chemistry
Proteins are organic compounds contain
alpha amino acids united by peptide
linkages.
They are composed of C, H, O and N2.
Amino Acids:
Contain amino group (NH2) and
carboxylic group (COOH)
Chemical Classification of amino acids

Amino Acids

Aliphatic aa Aromatic aa Heterocyclic aa

Neutral aa
Mono amino-mono carboxylic acid

Acidic aa
Mono amino-dicarboxylic acid

Basic aa
Diamino-monocarboxylic acid
Aliphatic amino acids
Contain NO ring structure

Glycine: α-amino acetic acid

Alanine: α-amino propionic acid

Serine: β-hydroxy α-amino propionic acid

Threonine

Valine
Leucine

Isoleucine

Cysteine

Cystine (Two molecules of cysteine united by S-S bond)

Methionine

Homoserine
Acidic amino acids

Aspartic acid

Glutamic acid
Basic amino acids

Arginine

Ornithine

Lysine

Hydroxylysine
Aromatic amino acids
Having aromatic ring

Phenylalanine

Tyrosine: p-hydroxy-phenylalanine
Heterocyclic amino acids
Having Heterocyclic ring

Tryptophane: α-amino- β-indole propioinc


acid

Hisitidine: α-amino- imidazole propioinc


acid
Heterocyclic amino acids (cont.,)
Having Heterocyclic ring

Proline

Hydroxyproline

HO---
Amino Acids (aa):
 9 of the 20 amino acids must be completely obtained
from the diet and ONE* must be partially obtained
from diet
 These are referred to as the essential amino acids
(TPLVI HAMLT)
 Threonine Histidine
 Phenylalanine Arginine*
 Leucine Methionine
 Valine Lysine
 Isoleucine Tryptophan
 Proteins are also the major source of nitrogen in the diet
Nutritional Classification
Nutritional Classification
N.B.: Arginine and Histidine are essential for
growing animals but not for adults.
Semiessential aa

Proteins containing all essential a.a. are


called proteins of high biological value.
Metabolic Classification
1. Glucogenic amino acids:
give Glucose
Glycine, serine, arginine and glutamic acid
2. Ketogenic amino acids:
give ketone bodies (Leucine)
3. Glucogenic and Ketogenic amino
acids: give both…
Phenylalanine, tyrosine, tryptophan, isoleucine and lysine.
Amino Acids Properties
All are α-amino acids
Majority are L-amino acids
All are optically active
(except glycine)
Glycine doesn’t contain asymmetric carbon atom
Amino Acids Properties
Amphoteric properties:
In acidic medium, they act as base
carrying (+) charges.
In alkaline medium, they act as acids
carrying (-) charges.
In certain pH, they carry both (+) and (-),
i.e. electrically neutral.
This is called isoelectric point
(IEP)
Amino Acids Properties
Isoelectric point (IEP):
It is the pH at which the amino acid or
protein carries both (+) and (-) charges and
so its electrically neutral.
It is called (ZWITTER ION) or (dipolar
ion).
Amino acid mixture can be separated and identified by a
technique called Thin Layer Chromatography (TLC)
Digestion

No digestion in the mouth


it begins in the stomach
Hydrochloric acid denatures protein and
also converts pepsinogen to pepsin
Pepsin breaks the proteins into small
peptides of various lengths and a. a.
Pepsin completes ~ 10-20% of digestion
Digestion (cont.,)

Pancreas makes trypsinogen and


chymotrypsinogen (proenzymes)
They will be activated to trypsin and
chymotrypsin (proteases)
Proteases break down polypeptides into
smaller peptides (very few peptides have
been broken down to amino acids at this
stage)
Absorption:
most protein absorbed in the duodenum
and jejunum
>99% of protein enters the blood stream
as amino acids
whole protein absorption can cause a
severe allergic reaction
How Much Protein Do We Need?
Adults:
0.8 grams per kilogram of body weight per
day (0.8/kg/day)

Endurance Athletes:
1.2 to 1.4 g/kg/day

Heavy Weight Trainers:


1.7 to 1.8 g/kg/day
Protein quality
Complete Proteins:
provide all the essential amino acids
(animal proteins)
High biological value
Incomplete Proteins:
are missing one or more essential amino
acids (Low biological value)
(plant proteins except soy protein)
Incomplete proteins can be served with a
complementary protein to make it complete
Excess dietary protein

May strain the kidneys


May cause mineral losses
(especially calcium)*
May increase risk of obesity*
May increase risk of heart disease*
May increase risk of cancer*
*only with animal protein

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