Breast Cancer Journal
Breast Cancer Journal
Breast Cancer Journal
Abstract
Background: Patients with pathogenic sequence variants (PSVs) in BRCA1/BRCA2 are at high risk of developing ovar-
ian cancer (OC). However, genetic testing for BRCA1/BRCA2 PSVs is still not a routine practice in the Middle East. With
the lack of epidemiological studies in the region, we aim to describe the prevalence of BRCA1/BRCA2 PSVs in patients
with OC across different countries in the Gulf region.
Methods: The PREDICT study was an observational, prospective, epidemiological study, which consecutively
recruited women with ovarian, primary peritoneal, and fallopian tube cancers from the following Gulf countries over
the period from July 2017 to July 2019; United Arab Emirates (UAE), Kuwait, and Oman. The study was approved by
the local ethics committee of participating centers. The BRCA1/BRCA2 PSVs were assessed by tissue genetic testing
using next-generation sequencing (NGS).
Results: A total of 105 women were included with a median age at diagnosis of 52 years (IQR 44.5 – 61.0). Nearly
11.4% of patients reported a family history of ovarian or breast cancer, while 4.7% of patients reported a family history
of other cancers. Most of the patients (70.3%) had advanced disease (FIGO stage III/IV) at presentation. Eighty-eight
patients (84%) were successfully tested for somatic BRCA1/BRCA2 PSVs. Fifteen patients (17%) were found to have
PSVs in either BRCA1, BRCA2, or both genes; of them, 10 patients (11.2%) had BRCA1 somatic PSVs alone, eight patients
(9.1%) had BRCA2 somatic PSVs, while three patients (2.9%) had both PSVs. Five patients with BRCA1/BRCA2 somatic
PSVs had germline PSVs tests, and three of them tested positive. Concerning treatment, 87.6% of patients received
perioperative chemotherapy and 6.6% as first-line palliative chemotherapy. Eighty-seven (82.9%) patients underwent
debulking surgery, with no residual disease in 42.5% of patients.
Conclusion: Our study showed that the prevalence of BRCA1/BRCA2 somatic PSVs in patients with OC is higher than
the reported global figures (2-8%). However, more studies are warranted to further elucidate the prevalence of BRCA1/
BRCA2 somatic and germline PSVs, as well as other relevant genetic alterations, to better understand their impact on
OC patient outcomes in Gulf countries.
Trial registration: NCT03082976.
Keywords: Gynaecological oncology, Cancer genetics, Epidemiology
Introduction
Ovarian cancer is considered to be the eighth most com-
*Correspondence: [email protected]
1
Tawam Hospital, Al Ain, United Arab Emirates
mon cancer among females and the eighth cause of death
Full list of author information is available at the end of the article from cancer in women [1, 2], with a high mortality rate
© The Author(s) 2021. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which
permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the
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Azribi et al. BMC Cancer (2021) 21:1350 Page 2 of 8
(62.5%) and one of the worst prognoses among gyneco- consecutively from Kuwait Cancer Control Center
logic cancers [1, 3, 4]. Approximately 75% of women at (KCCC) in Kuwait, SQUH in Oman, and Tawam Hospi-
diagnosis presented with advanced disease status [5], tal in UAE over the period from July 2017 to July 2019.
which account for the poor prognosis of the disease [5, Female patients aged 18 years or older with histologi-
6]. In the Middle East, women with gynecological can- cally confirmed epithelial ovarian, primary peritoneal,
cers tend to seek medical advice very late in the course or fallopian tube cancers were eligible for the study. An
of their disease due to several factors, including stigma availability of paraffin-embedded archived tumor tis-
and the lack of awareness about reproductive health [7]. sue block or a minimum of twenty 10-μm sections (if a
Several risk factors are incorporated in the development block is not available) was also required. Patients with
of ovarian cancer, such as family history, indicating the previous tumors metastasizing to the ovary, patients
involvement of a genetic component in the development with secondary malignancies associated with ovar-
of this disease [8]. Accordingly, knowledge of the genetic ian cancer, patients diagnosed with other severe acute
susceptibility to ovarian cancer can be useful in preven- or chronic medical or psychiatric conditions were
tion efforts [9]. excluded from this study. Patients enrolled in this study
An important factor that contributes to ovarian can- signed an informed consent form (ICF) when meet-
cer susceptibility is mainly represented in BRCA1 and ing all inclusion criteria. Demographic and clinical
BRCA2 genes that are associated with different risks of characteristics data were collected from patient medi-
developing breast and ovarian cancers [9, 10]. Carriers of cal records of the hosting institutions. Archived tumor
inherited pathogenic sequence variants (PSVs) in BRCA1 samples were also obtained for the analysis of somatic
and BRCA2 are at an increased lifetime risk of develop- BRCA PSVs. Blood samples for genetic testing of ger-
ing ovarian cancer; recent reports highlighted that the mline BRCAPSVs were sent to a central lab.
cumulative risk of ovarian cancer to age 80 years was 44% The analysis was performed on genomic DNA iso-
for BRCA1 carriers and 17% (95% CI, 11-25%) for BRCA2 lated from formalin-fixed paraffin-embedded (FFPE)
carriers [11]. The prevalence of BRCA1 and BRCA2 PSVs tissue from blocks or slides of the ovarian, fallopian
vary worldwide depending on several factors, including tube, or peritoneal serous carcinoma using the Tumor
the type of cancer and ethnic groups. Germline BRCA1 BRCA Analysis test. As a quality check, the portion of
and BRCA2 PSVs may be prevalent in up to 20% of epi- the tumor should have measured at least 5 × 5 mm and
thelial ovarian cancer. Somatic PSVs occur less frequently contain at least 20% tumor cellularity. In cases where
in BRCA1 and BRCA2 PSVs, with an estimated preva- blocks were not available, one 4-5 μm H&E slide and
lence of 2 and 8%, respectively [8, 12–14]. .There is a scar- four consecutive 10 μm unstained slides were accept-
city of data in the Middle East about the proportion of able. Patient DNA was extracted and purified from
ovarian cancer patients carrying these PSVs, and genetic the tumor specimen, assigned a unique bar-code for
testing is often not part of routine practice, despite its robotic-assisted continuous sample tracking, and sub-
potential for personalized medical treatment [15–18]. mitted for molecular testing.
This study estimated the prevalence of BRCA1 and The test consists of sequencing and large rearrange-
BRCA2 PSVs among female patients ≥18 years of age that ment analyses of the BRCA1 and BRCA2 genes using
are diagnosed with ovarian cancer, peritoneal cancer, and next-generation sequencing (NGS). For BRCA1, full
fallopian tube cancer in the Gulf region, with the aim of sequence determination of approximately 5.400 base-
informing clinical practice and improving clinical treat- pairs comprising 22 coding exons and approximately
ments in the future. It also describes the demograph- 750 introns were performed, excluding exons 1 and 4,
ics and clinical characteristics of patients with ovarian which are non-coding. For BRCA2, full sequence deter-
cancer. mination of approximately 10.200 base-pairs compris-
ing 26 coding exons and approximately 900 introns
Methods were performed, excluding exon 1, which is non-cod-
We followed STROBE guidelines for cross-sectional ing. Genomic DNA derived from the tumor was also
study during the preparation of the present manuscript. analyzed for large rearrangement analyses by NGS to
The study was approved by the local ethics committee of determine copy number abnormalities indicative of
Study design Salt Lake City, UT) kits on available tissue blocks from
This study is a multicenter, prospective, observational the subjects enrolled. Germline BRCA PSV using blood
epidemiologic study conducted across the Gulf region sample was used to detect if hereditary reason exists in
in UAE, Oman, and Kuwait. Patients were recruited those who were mutated.
Azribi et al. BMC Cancer (2021) 21:1350 Page 3 of 8
Prevalence of BRCAPSVs (Fig. 1). Among all 15 patients with the somatic PSVs,
Somatic BRCAPSVs were present in 15 out of 88 subjects five patients were tested for germline PSVs. Among this
who had available test results (17.0, 95% CI, 9.9 to 26.6%). group, 3 (60%) had positive germline PSVs. The list of
The individual prevalence of BRCA1 and BRCA2 somatic PSVs position as per Gene Report is shown in Table 2.
PSVs among those with test results was 11.2% (95% CI, The clinical and histological features for those with
4.7 to 17.8%) and 9.1% (95% CI, 3.1 to 15.1%), respectively somatic BRCA1/BRCA2 compared with those who do
- The clinically significant variant NM_007294: c.1016delA was identified in exon 10 of the BRCA1 gene. No Pathogenic BRCA2 mutation or rearrang-
ment detected
- Pathogenic mutation in BRCA1 gene. c.140G > T (p.Cys47Phe)
- c.68_69del (p.Glu23Valfs*17)
- c.3436_3439 delTGTT P.CYS1146FS
- c.2269del (p.Val757Phefs*8) in BRCA 1
- BRCA1: c.4096G > C(p.Gly1366Arg), variant of uncertain significance BRCA2: c.10150C > T(p.Arg3384Ter), variant of uncertain significance
- BRCA1: c.2521C > T p.Arg841Trp BRCA1: c.1723G > A p.Glu575Lys
- BRCA1: c.237del (p.Phe79Leufs*9) BRCA2: None Detected
- BRCA1 mutation c.213-1A > T
- BRCA1 c.5107-5108delGAinsTG p.Glu1703Ter likely pathogenic
- c.4065_4065del
- BRCA1: pathogenic mutation detected. c.1716delA, p. (Glu572*) BRCA2: None Detected
- BRCA1 gene deleterious mutation c.4658del (p.Leu1553Cysfs*6)
- BRCA1 gene deleterious mutation c.1140dupG(p.Lys381 Glufs*3)
- C.512dupT (p.Gln172Thrfs*10)
- c.441 + 1G > A
- c.4065_4068del (p.Asn1355Lysfs*10)
- c.367C > T(p.Arg1203)
- c.3339 T > G, p.Tyr1113Ter pathogenic
- No Pathogenic BRCA1 or BRCA2 Mutation detected in tumor. Additional findings of BRCA2: c.353G > T (p.Arg118Leu) variant of uncertain significance
- c.6385G > T(pathogenic) p.Glu2129Ter
- Positive for a deleterious BRCA2 mutation in tumor c.7618-2A > G
- BRCA2 c.6815G > A p. (Arg2272Lys), variant may or may not modify protein function
- BRCA2 C.3201 del (p.Val1068 Tyrfs*9) gBRCA2 c.5290_5291delTC (p.Ser1764Lysfs*3) c.9019 > T(p.Arg3007*)
Azribi et al. BMC Cancer (2021) 21:1350 Page 5 of 8
not are presented in Table 3. Patients with somatic PSVs Table 3 Clinical and Histological Characteristics for those with
had slightly higher prevalence of family history of cancer and without somatic BRCA1 or BRCA2 PSVs
(13.3% versus 9.7%) and high-grade serous carcinoma Somatic BRCA1 or BCRA2
(66.7% versus 38.7%).
No (N = 72) Yes (N = 15)
n % n %
Discussion
The overall prevalence of somatic BRCA1/BRCA2 PSVs Age at diagnosis
in our study was 17% (95% CI, 9.9 to 26.6%). Accord- Mean ± SD 51.90 12.10 55.73 9.95
ing to previously published literature, the prevalence of Median (Q1-Q3) 51.50 44.50-60.0 56.00 47.0-64.0
BRCA1/BRCA2 PSVs ranges from 16 to 40% [13, 19–21], Family History
which reflects that the prevalence of BRCA1/BRCA2 Yes 7 9.7% 2 13.3%
PSVs in the Gulf region falls within the lower end in the No 65 90.3% 13 86.7%
global prevalence range. Several studies reported varia- Laterality
tion in the worldwide prevalence of BRCA1 and BRCA2 Bilateral 56 77.8% 10 66.7%
PSVs [13, 19–21]. This could be due to the ethnic differ- Unilateral 16 22.2% 5 33.3%
ences in the studied populations, barriers to access, dif- Allele
ferent tissue histology, and other latent variables. The Not Wild 17 23.6% 12 80.0%
Integrated genomic analyses of ovarian carcinoma study Wild 55 76.4% 3 20.0%
conducted through the Cancer Genome Atlas (TCGA) Stage at Diagnosis
Research Network reported a prevalence of 20% BRCA Unknown 4 5.6% 0 0.0%
PSVs in high-grade serous ovarian cancer samples. 0 1 1.4% 1 6.7%
Somatic BRCA PSVs were found in only 3% of patients I 13 18.1% 3 20.0%
[19]. Other studies reported an even higher overall preva- IIA 4 5.6% 2 13.3%
lence of BRCAPSVs in ovarian cancer patients; In a study IIB 4 5.6% 1 6.7%
of 100 samples of ovarian carcinoma, the PSVs were IIIA 6 8.3% 1 6.7%
identified in 28% of samples [22]. However, other studies IIIC 26 36.1% 5 33.3%
found a lower prevalence of BRCA1/BRCA2 PSVs, rang- IV 14 19.4% 2 13.3%
ing from 8 to 14.1% [10, 23, 24]. Moreover, Koczkowska Tumor stage
et al. reported the overall prevalence of somatic BRCA1/ Unknown 4 5.6% 0 0.0%
BRCA2 PSVs was 4.1%, respectively [22]. Tis 1 1.4% 0 0.0%
Looking closely at individual BRCA PSVs, our study T1a 4 5.6% 0 0.0%
reported that BRCA1 and BRCA2 PSVs were detected T1b 1 1.4% 0 0.0%
in 11.2 and 9.1% of the patients, respectively. Variabil- T1c 9 12.5% 3 20.0%
ity in the prevalence of individual BRCA1 and BRCA2 T2a 4 5.6% 1 6.7%
PSVs (similar to the overall prevalence of BRCA1/BRCA2 T2b 5 6.9% 0 0.0%
PSVs) was also observed in similar studies. Previous T2c 1 1.4% 1 6.7%
reports showed that the prevalence of somatic BRCA1 T3a 11 15.3% 4 26.7%
and BRCA2 PSVs occurred in 2 and 8% of the patients, T3b 3 4.2% 1 6.7%
respectively [8, 12]. T3c 24 33.3% 4 26.7%
Most patients in our study were with advanced stages Tx 5 6.9% 1 6.7%
at diagnosis. This is consistent with the study by Heintz Node stage
et al., which reported that 75% of patients with ovar- Unknown 4 5.6% 0 0.0%
ian cancer were typically diagnosed at late stages (56.3% N0 17 23.6% 2 13.3%
stage III or higher; 44.6% stage III and 11.7% stage IV) N1 8 11.1% 4 26.7%
[25]. Another German study conducted on 1038 patients Nx 43 59.7% 9 60.0%
with ovarian cancer showed similar results (79% present- Metastatic stage
ing with FIGO III disease) [26]. The late presentation of Unknown 4 5.6% 0 0.0%
ovarian cancer in the Gulf region and the Middle East is M0 25 34.7% 5 33.3%
due to the stealthy nature of ovarian cancer, the stigma M1 6 8.3% 2 13.3%
of reporting gynecological symptoms, and lack of health Mx 37 51.4% 8 53.3%
awareness, especially among older women. FIGO classification
According to Stratton et al., and compared to women
IA 3 4.2% 0 0.0%
without familial history of ovarian cancer, women with a
Azribi et al. BMC Cancer (2021) 21:1350 Page 6 of 8
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